SEARCH

SEARCH BY CITATION

References

  • Abraham WR, Strompl C, Meyer H et al. (1999) Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter. Int J Syst Bacteriol 49: 10531073.
  • Algaeir M, Uphoff H, Felske A & Wagner-Dobler I (2003) Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Am Soc Microbiol 69: 50515059.
  • Altschul SF, Madden TL, Schaeffer AA et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Baker AC (2003) Flexibility and specificity in coral-algal symbiosis: diversity, ecology, and biogeography of Symbiodinium. Annu Rev Ecol Syst 34: 661689.
  • Banin E, Israely T, Kusmaro A, Loya Y, Orr E & Rosenberg E (2000) Penetration of the coral-bleaching bacterium Vibrio shiloi into Oculina patgonica. Appl Environ Microbiol 66: 30313036.
  • Barash Y, Sulam R, Loya Y & Rosenberg E (2005) Bacterial Strain BA-3 and a filterable factor cause a white plague-like disease in corals from the Eilat coral reef. Aquat Microb Ecol 40: 183189.
  • Ben-Haim Y, Zicherman-Keren M & Rosenberg E (2003) Temperature-regulated bleaching and lysis of the coral Pocillopora damicornis by the novel pathogen Vibrio coralliilyticus. Appl Environ Microbiol 69: 42364242.
  • Berkelmans R & Van Oppen MJH (2006) The role of zooxanthellae in the thermal tolerance of corals: a ‘nugget of hope’ for coral reefs in an era of climate change. P Roy Soc B-Biol Sci 273: 23052312.
  • Bourne D, Iida Y, Uthicke S & Smith-Kuene C (2008) Changes in coral-associated microbial communities during a bleaching event. ISME J 2: 350363.
  • Bourne DG & Munn CB (2005) Diversity of bacteria associated with the coral Pocillopora damicornis from the Great Barrier Reef. Environ Microbiol 7: 11621174.
  • Brinkhoff T, Bach G, Heidorn T, Liang L, Schlingloff A & Simon M (2004) Antibiotic production by a Roseobacter clade-affiliated species from the German Wadden Sea and antagonistic effects on indigenous isolates. Appl Environ Microbiol 70: 25602565.
  • Bruckner AW, Bruckner RJ & Williams EH Jr (1997) Spread of black-band disease epizootic through the coral reef system in St. Ann's Bay, Jamaica. B Mar Sci 61: 919928.
  • Bruno JF, Selig R, Casey KS, Page CA, Willis BL, Harvell CD, Sweatman H & Melendy AM (2007) Thermal stress and coral cover as drivers of coral disease outbreaks. PLoS Biol 5: 124.
  • Castillo I, Lodeiros C, Nunez M & Campos I (2001) In vitro evaluation of antibacterial substances produced by bacteria isolated from different marine organisms. Rev Biol Trop 49: 12131221.
  • Cervino JM, Hayes RL, Polson SW, Polson SC, Goreau TJ, Martinez RJ & Smith GW (2004) Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals. Appl Environ Microbiol 70: 68556864.
  • Cooney RP, Pantos O, Le Tissier MDA, Barer MR, O'Donnell AG & Bythell JC (2002) Characterization of the bacterial consortium associated with black band disease in coral using molecular microbiological techniques. Environ Microbiol 4: 401413.
  • Ducklow HW & Mitchell R. (1979) Bacterial populations and adaptions in the mucus layers of living corals. Limnol Oceanogr 24: 715725.
  • Ferris MJ, Muyzer G & Ward DM (1996) Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl Environ Microbiol 62: 340346.
  • Frias-Lopez J, Zerkle AL, Bonheyo GT & Fouke BW (2002) Partitioning of bacterial communities between seawater and healthy, black band diseased, and dead coral surfaces. Appl Environ Microbiol 68: 22142228.
  • Gallacher S, Flynn KJ, Franco JM, Brueggemann EE & Hines HB (1997) Evidence for production of paralytic shellfish toxins by bacteria associated with Alexandrium spp. (Dinophyta) in culture. Appl Environ Microbiol 63: 239245.
  • Gelsomino A, Keijzer-Wolters AC, Cacco G & Van Elsas JD (1999) Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J Microbiol Meth 38: 115.
  • Gil-Agudelo DL & Garzon-Ferreira J (2001) Spatial and seasonal variation of dark spots disease in coral communities of the Santa Marta area (Columbia Caribbean). B Mar Sci 69: 619629.
  • Gram L, Grossart HP, Schlingloff A & Kiørboe T (2002) Possible quorum sensing in marine snow bacteria: production of acylated homoserine lactones by Roseobacter strains isolated from marine snow. Appl Environ Microbiol 68: 41114116.
  • Hold GL, Smith EA, Rappé MS, Maas EW, Moore ERB, Stroempl C, Stephen JR, Prosser J, Birkbeck TH & Gallacher S (2001) Characterisation of bacterial communities associated with toxic and non-toxic dinoagellates: Alexandrium spp. and Scrippsiella trochoidea. FEMS Microbiol Ecol 37: 161173.
  • Huu NB, Denner EBM, Ha DTC, Wanner G & Stan-Lotter H (1999) Marinobacter aquaeoli sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well. Int J Syst Bacteriol 49: 367375.
  • Kaczmarsky LT, Draud M & Williams EH (2005) Is there a relationship between proximity to sewage effluent and the prevalence of coral disease? Caribb J Sci 41: 124137.
  • Kim K & Harvell C (2002) Aspergillosis of Sea Fan Corals: Dynamics in the Florida Keys. CRC Press, Boca Raton, FL.
  • Klause JS, Janse I, Heikoop JM, Sanford RA & Fouke BW (2007) Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution. Environ Microbiol 9: 12911305.
  • Knowlton N & Rohwer F (2003) Multispecies microbial mutualisms on coral reefs: the host as a habitat. Am Nat 162: 5162.
  • Koren O & Rosenberg E (2006) Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter. Appl Environ Microbiol 72: 52545259.
  • Kushmaro A, Loya Y, Fine M & Rosenberg E (1996) Bacterial infection and coral bleaching. Nature 380: 396396.
  • Kuta K & Richardson L (2002) Ecological aspects of black band disease of corals: relationships between disease incidence and environmental factors. Coral Reefs 21: 393398.
  • Lafay B, Ruimy R, Rausch de Traubenberg C, Breittmayer V, Gauthier MJ & Christen R (1995) Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoagellate Prorocentrum lima. Int J Syst Bacteriol 45: 290296.
  • Larcombe P, Ridd PV, Prytz A & Wilson B (1995) Factors controlling suspended sediment on inner-shelf coral reefs, Townsville, Australia. Coral Reefs 14: 163171.
  • Lesser MP, Mazel CH, Gorbunov MY & Falkowski PG (2004) Discovery of symbiotic nitrogen-fixing cyanobacteria in corals. Science 305: 9971000.
  • Maarit Niemi R, Heiskanen I, Wallenius K & Lindstrom K (2001) Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia. J Microbiol Meth 45: 155165.
  • Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ & Woese CR. (1996) The Ribosomal Database Project (RDP). Nucleic Acids Res 24: 8285.
  • Marchesi JR, Sato T, Weightman AJ, Martin TA & Wade WG (1998) Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol 64: 795799.
  • Marquez MC & Ventosa A (2005) Marinobacter hydrocarbonoclasticus Gauthier et al. 1992 and Marinobacter aquaeolei Nguyen et al. 1999 are heterotypic synonyms. Int J Syst Bacteriol Evol Microbiol 55: 13491351.
  • Muslim IR & Graham Jones G (2003) The seasonal variation of dissolved nutrients, chlorophyll a and suspended sediments at Nelly Bay, Magnetic Island. Estuar Coast Shelf S 57: 445455.
  • Muyzer G & Smalla K (1998) Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73: 127141.
  • Muyzer G, De Waal EC & Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695700.
  • Nicholson CA & Fathepure BZ (2004) Biodegradation of benzene by halophilic and halotolerant bacteria under aerobic conditions. Appl Environ Microbiol 70: 12221225.
  • Nikolausz M, Sipos R, Revesz S, Szekely A & Marialigeti K (2005) Observation of bias associated with re-amplification of DNA isolated from denaturing gradient gels. FEMS Microbiol Lett 244: 385390.
  • Pantos O, Cooney RP, Le Tissier MDA, Barer MR, O'Donnell AG & Bythell JC (2003) The bacterial ecology of a plague-like disease affecting the Caribbean coral Montastrea annularis. Environ Microbiol 5: 370382.
  • Patterson KL, Porter JW, Ritchie KB et al. (2002) The etiology of whitepox, a lethal disease of the Caribbean elkhorn coral Acropora palmata. P Natl Acad Sci USA 99: 87258730.
  • Paul JH, Deaun MF & Jeffery WH (1986) Elevated levels of microbial activity in the coral surface monolayer. Mar Ecol-Prog Ser 33: 2940.
  • Reshef L, Koren O, Loya Y, Zilber-Rosenberg I & Rosenberg E (2006) The coral probiotic hypothesis. Environ Microbiol 8: 20682073.
  • Richardson LL & Kuta KG (2003) Ecological physiology of the black band disease cyanobacterium Phormidium corallyticum. FEMS Microbiol Ecol 43: 287298.
  • Ritchie KB (2006) Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol-Prog Ser 322: 114.
  • Ritchie KB & Smith GW (1995) Preferential carbon utilization by surface bacterial communities from water mass, normal, and white-band diseased Acropora cervicornis. Mol Mar Biol Biotech 4: 345352.
  • Ritchie KB & Smith GW (1997) Physiological comparison of bacterial communities from various species of scleractinian corals. Proc 8th Int Coral Reef Symp 1: 521526.
  • Ritchie KB & Smith GW (2004) Microbial Communities of Coral Surface Mucopolysaccharide Layers. Springer-Verlag, Berlin.
  • Roa D, Webb JS & Kjelleberg S (2005) Competitive interactions in mixed-species biofilms containing the marine bacterium Pseudoalteromonas tunicata. Appl Environ Microbiol 71: 17291736.
  • Rohwer F, Breitbart M, Jara J, Azam F & Knowlton N (2001) Diversity of bacteria associated with the Caribbean coral Montastraea franksi. Coral Reefs 20: 8591.
  • Rohwer F, Seguritan V, Azam F & Knowlton N (2002) Diversity and distribution of coral-associated bacteria. Mar Ecol-Prog Ser 243: 110.
  • Rosenberg E & Falkovitz L (2004) The Vibrio shiloi/Oculina patagonica model system of coral bleaching. Annu Rev Microbiol 58: 143159.
  • Ryan PD, Harper DAT & Whalley JS (1995) Palstat: User's Manual and Case Histories : Statistics for Palaeontologists and Palaeobiologists, pp. 175. Springer, Berlin.
  • Santavy DL (1995) The diversity of microorganisms associated with marine invertebrates and their roles in the maintenance of ecosystems. Microbial Diversity and Ecosystem Function (AllsoppD, ColwellR & HawksworthDL, eds), pp. 211229. CAB International, Wallingford.
  • Shashar N, Cohen Y, Loya Y & Sar N (1994) Nitrogen-fixation (acetylene-reduction) in stony corals – evidence for coral–bacteria interactions. Mar Ecol-Prog Ser 111: 259264.
  • Smith CJ, Danilowicz BS, Clear AK, Costello FJ, Wilson B & Meijer WG (2006) T-Align, a web-based tool for comparison of multiple terminal restriction fragment length polymorphism profiles. FEMS Microbiol Ecol 54: 375380.
  • Sorokin DY (1995) Sulfitobacter pontiacus gen. nov., sp. nov., a new heterotrophic bacterium from the Black Sea, specialised on sulfite oxidation. Microbiology 64: 295305.
  • Staley IT, Konopka AE & Dalmasso JP (1987) Spatial and temporal distribution of Caulobacter spp. in two mesotrophic lakes. FEMS Microbiol Ecol 45: 16.
  • Williams WM, Viner AB & Broughton WJ (1987) Nitrogen-fixation (acetylene-reduction) associated with the living coral Acropora variabilis. Mar Biol 94: 531535.
  • Zilber-Rosenberg I & Rosenberg E (2008) Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution. FEMS Microbiol Rev 32: 723735.
  • Zubkov MV, Fuchs BM, Archer SD, Kiene RP, Amann R & Burkill PH (2001) Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea. Environ Microbiol 3: 304311.
  • Zubkov MV, Fuchs BM, Archer SD, Kiene RP, Amann R & Burkill PH (2002) Rapid turnover of dissolved DMS and DMSP by defined bacterioplankton communities in the stratified euphotic zone of the North Sea. Deep-Sea Res 49: 30173038.