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  • Agogue H, Brink M, Dinasquet J & Herndl GJ (2008) Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456: 788791.
  • Avrhami S & Conrad R (2003) Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures. Appl Environ Microb 69: 61526164.
  • Avrahami S & Conrad R (2005) Cold-temperate climate: a factor for selection of ammonia oxidizers in upland soil? Can J Microbiol 51: 709714.
  • Avrahami S, Conrad R & Braker G (2002) Effect of soil ammonium concentration on N2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl Environ Microb 68: 56855692.
  • Avrahami S, Liesack W & Conrad R (2003) Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers. Environ Microbiol 5: 691705.
  • Bremner JM (1996) Nitrogen – total. Methods of Soil Analysis: Part 3 – Chemical Methods, Vol. 37 (SparksDL et al., eds), pp. 10851121. Soil Science Society of America, American Society of Agronomy, Madison, WI.
  • Brooks PD, Williams MW & Schmidt SK (1996) Microbial activity under alpine snow packs, Niwot Ridge, Colorado. Biogeochemistry 32: 93113.
  • Caffrey JM, Bano N, Kalanetra K & Hollibaugh JT (2007) Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J 1: 660662.
  • Chen XP, Zhu YG, Xia Y, Shen JP & He JZ (2008) Ammonia-oxidizing archaea: important players in paddy rhizosphere soil? Environ Microbiol 10: 19781987.
  • Christner BC (2002) Incorporation of DNA and protein precursors into macromolecules by bacteria at −15 degrees C. Appl Environ Microb 68: 64356438.
  • Clein JS & Schimel JP (1995) Microbial activity of tundra and taiga soils at subzero temperatures. Soil Biol Biochem 27: 12311234.
  • Di HJ, Cameron KC, Shen JP, Winefield CS, O'Callaghan M, Bowatte S & He JZ (2009) Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils. Nature Geoscience 2: 621624.
  • Francis CA, Roberts KJ, Beman JM, Santoro AE & Oakley BB (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. P Natl Acad Sci USA 102: 1468314688.
  • Giorgi F, Hurrell JW, Marinucci MR & Beniston M (1997) Elevation dependency of the surface climate change signal: a model study. J Climate 10: 288296.
  • Hansel CM, Fendorf S, Jardine PM & Francis CA (2008) Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile. Appl Environ Microb 74: 16201633.
  • Hatzenpichler R, Lebecleva EV, Spieck E, Stoecker K, Richter A, Daims H & Wagner M (2008) A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. P Natl Acad Sci USA 105: 21342139.
  • Hawkes CV, Wren IF, Herman DJ & Firestone MK (2005) Plant invasion alters nitrogen cycling by modifying the soil nitrifying community. Ecol Lett 8: 976985.
  • He JZ, Shen JP, Zhang LM, Zhu YG, Zheng YM, Xu MG & Di H (2007) Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices. Environ Microbiol 9: 23642374.
  • Horz HP, Barbrook A, Field CB & Bohannan BJM (2004) Ammonia-oxidizing bacteria respond to multifactorial global change. P Natl Acad Sci USA 101: 1513615141.
  • Jiang H, Dong H, Yu B, Lv G, Deng S, Berzins N & Dai M (2009) Diversity and abundance of ammonia-oxidizing archaea and bacteria in Qinghai Lake, northwestern China. Geomicrobiol J 26: 199211.
  • Jones RD, Morita RY, Koops HP & Watson SW (1988) A new marine ammonium-oxidizing bacterium, Nitrosomonas-cryotolerans Sp-Nov. Can J Microbiol 34: 11221128.
  • Könneke M, Bernhard AE, De La Torre JR, Walker CB, Waterbury JB & Stahl DA (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543546.
  • Lam P, Jensen MM, Lavik G, McGinnis DF, Muller B, Schubert CJ, Amann R, Thamdrup B & Kuypers MMM (2007) Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. P Natl Acad Sci USA 104: 71047109.
  • Leininger S, Urich T, Schloter M, Schwark L, Qi J, Nicol GW, Prosser JI, Schuster SC & Schleper C (2006) Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442: 806809.
  • Lipson DA, Schmidt SK & Monson RK (1999) Links between microbial population dynamics and nitrogen availability in an alpine ecosystem. Ecology 80: 16231631.
  • Mincer TJ, Church MJ, Taylor LT, Preston C, Kar DM & DeLong EF (2007) Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ Microbiol 9: 11621175.
  • Mosier AC & Francis CA (2008) Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary. Environ Microbiol 10: 30023016.
  • Nicol GW, Leininger S, Schleper C & Prosser JI (2008) The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol 10: 29662978.
  • Park HD, Wells GF, Bae H, Criddle CS & Francis CA (2006) Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors. Appl Environ Microb 72: 56435647.
  • Prosser JI & Nicol GW (2008) Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol 10: 29312941.
  • Reigstad LJ, Richter A, Daims H, Urich T, Schwark L & Schleper C (2008) Nitrification in terrestrial hot springs of Iceland and Kamchatka. FEMS Microbiol Ecol 64: 167174.
  • Rotthauwe JH, Witzel KP & Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microb 63: 47044712.
  • Santoro AE, Francis CA, De Sieyes NR & Boehm AB (2008) Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environ Microbiol 10: 10681079.
  • Shen JP, Zhang LM, Zhu YG, Zhang JB & He JZ (2008) Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam. Environ Microbiol 10: 16011611.
  • Sommerfeld RA, Mosier AR & Musselman RC (1993) CO2, CH4 and N2O flux through a Wyoming snowpack and implications for global budgets. Nature 361: 140142.
  • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961599.
  • Tourna M, Freitag TE, Nicol GW & Prosser JI (2008) Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ Microbiol 10: 13571364.
  • Treusch AH, Leininger S, Kletzin A, Schuster SC, Klenk HP & Schleper C (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 19851995.
  • Venter JC, Remington K, Heidelberg JF et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 6674.
  • Weidler GW, Dornmayr-Pfaffenhuemer M, Gerbl FW, Heinen W & Stan-Lotter H (2007) Communities of Archaea and Bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps, and evidence of ammonia-oxidizing Crenarchaeota. Appl Environ Microb 73: 259270.
  • Wu SH, Yin YH, Zheng D & Yang QY (2007) Climatic trends over the Tibetan Plateau during 1971–2000. J Geographical Sciences 70: 141151.
  • Wuchter C, Abbas B, Coolen MJL et al. (2006) Archaeal nitrification in the ocean. P Natl Acad Sci USA 103: 1231712322.
  • Xu ZH, Chen CR, He JZ & Liu JX (2009) Trends and challenges in soil research 2009: linking global climate change to local long-term forest productivity. J Soil Sediment 9: 8388.