SEARCH

SEARCH BY CITATION

References

  • Anonymous (2005) Official Methods of Analysis of AOAC International, 18th edn. AOAC International, Gaithersburg, MD.
  • Association of American Feed Control Officials (AAFCO) (2006) Association of American Feed Control Officials. Official Publication, Atlanta, GA.
  • Baillon ML, Marshall-Jones ZV & Butterwick RF (2004) Effects of probiotic Lactobacillus acidophilus strain DSM13241 in healthy adult dogs. Am J Vet Res 65: 338343.
  • Balamurugan R, Janardhan HP, George S, Raghava MV, Muliyil J & Ramakrishna BS (2008) Molecular studies of fecal anaerobic commensal bacteria in acute diarrhea in children. J Pediatr Gastr Nutr 46: 514519.
  • Balish E, Cleven D, Brown J & Yale CE (1977) Nose, throat, and fecal flora of Beagle dogs housed in ‘locked’ or ‘open’ environments. Appl Environ Microb 34: 207221.
  • Barcenilla A, Pryde SE, Martin JC, Duncan SH, Stewart CS, Henderson C & Flint HJ (2000) Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microb 66: 16541661.
  • Benno Y & Mitsuoka T (1992) Evaluation of the anaerobic method for the analysis of fecal microflora of Beagle dogs. J Vet Med Sci 54: 10391041.
  • Benno Y, Nakao H, Uchida K & Mitsuoka T (1992) Individual and seasonal variations in the composition of fecal microflora of Beagle dogs. Bifidobacteria Microflora 1: 6976.
  • Benyacoub J, Czarnecki-Maulden GL, Cavadini C, Sauthier T, Anderson RE, Schiffrin EJ & Von Der Weid T (2003) Supplementation of food with Enterococcus faecium (SF68) stimulates immune functions in young dogs. J Nutr 133: 11581162.
  • Buddington RK & Weiher E (1999) The application of ecological principles and fermentable fibers to manage the gastrointestinal tract ecosystem. J Nutr 129: 1446S1450S.
  • Castillo M, Skene G, Roca M, Anguita M, Badiola I, Duncan SH, Flint HJ & Martín-Orúe SM (2007) Application of 16S rRNA gene-targetted fluorescence in situ hybridization and restriction fragment length polymorphism to study porcine microbiota along the gastrointestinal tract in response to different sources of dietary fibre. FEMS Microbiol Ecol 59: 138146.
  • Cave NJ, Marks SL, Kass PH, Melli AC & Brophy MA (2002) Evaluation of a routine diagnostic fecal panel for dogs with diarrhea. J Am Vet Med Assoc 221: 5259.
  • Devereux R, Kane MD, Winfrey J & Stahl DA (1992) Genus- and group-specific hybridization probes for determinative and environmental studies of sulfate-reducing bacteria. Syst Appl Microbiol 15: 601609.
  • Franks AH, Harmsen HJ, Raangs GC, Jansen GJ, Schut F & Welling GW (1998) Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl Environ Microb 64: 33363345.
  • Greetham HL, Giffard C, Hutson RA, Collins MD & Gibson GR (2002) Bacteriology of the Labrador dog gut: a cultural and genotypic approach. J Appl Microbiol 93: 640646.
  • Harmsen HJ, Elfferich P, Schut F & Welling GW (1999) A 16S rRNA-targeted probe for detection of lactobacilli and enterococci in faecal samples by fluorescent in situ hybridisation. Microb Ecol Health D 14: 165173.
  • Harmsen HJ, Wildeboer-Veloo AC, Grijpstra J, Knol J, Degener JE & Welling GW (2000) Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacteriaceae in human feces from volunteers of different age groups. Appl Environ Microb 66: 45234527.
  • Langendijk PS, Schut F, Jansen GJ, Raangs GC, Kamphuis GR, Wilkinson MH & Welling GW (1995) Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. Appl Environ Microb 61: 30693075.
  • Leib MS (2000) Treatment of chronic idiopathic large-bowel diarrhea in dogs with a highly digestible diet and soluble fiber: a retrospective review of 37 cases. J Vet Intern Med 14: 2732.
  • Mai V, Braden CR, Heckendorf J, Pironis B & Hirshon JM (2006) Monitoring of stool microbiota in subjects with diarrhea indicates distortions in composition. J Clin Microbiol 44: 45504552.
  • Manz W, Amann R, Ludwig W, Vancanneyt M & Schleifer KH (1996) Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum CytophagaFlavobacterBacteroides in the natural environment. Microbiology 142: 10971106.
  • Marks SL, Kather EJ, Kass PH & Melli AC (2002) Genotypic and phenotypic characterization of Clostridium perfringens and Clostridium difficile in diarrhetic and healthy dogs. J Vet Intern Med 16: 533540.
  • Martineau B (1999) Comparison of four media for the selection of bifidobacteria in dog fecal samples. Anaerobe 5: 123127.
  • Martín-Peláez S, Gibson GR, Martín-Orúe SM, Klinder A, Rastall RA, La Ragione RM, Woodward MJ & Costabile A (2008) In vitro fermentation of carbohydrates by porcine faecal inocula and their influence on Salmonella Typhimurium growth in batch culture systems. FEMS Microbiol Ecol 66: 608619.
  • McMichael M (2005) Critical care of patients with gastrointestinal disease. BSAVA Manual of Canine and Feline Gastroenterology, 2nd edn (HallEJ, SimpsonJW & WilliamsDA, eds), pp. 279287. Blackwell Publishing, Oxford, UK.
  • Mentula S, Harmoinen J, Heikkilä M, Westermarck E, Rautio M, Huovinen P & Könönen E (2005) Comparison between cultured small-intestinal and fecal microbiotas in Beagle dogs. Appl Environ Microb 71: 41694175.
  • Mueller S, Saunier K, Hanisch C et al. (2006) Differences in fecal microbiota in different European study populations in relation to age, gender, and country: a cross-sectional study. Appl Environ Microb 72: 10271033.
  • Muyzer G, De Waal EC & Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microb 59: 695700.
  • Nobaek S, Johansson ML, Molin G, Ahrne S & Jeppsson B (2000) Alteration of intestinal microflora is associated with reduction in abdominal bloating and pain in patients with irritable bowel syndrome. Am J Gastroenterol 95: 12311238.
    Direct Link:
  • Poulsen LK, Licht TR, Rang C, Krogfelt KA & Molin S (1995) Physiological state of Escherichia coli BJ4 growing in the large intestines of streptomycin-treated mice. J Bacteriol 177: 58405845.
  • Rademaker JW & De Bruijn FJ (2004) Computer-assisted analysis of molecular fingerprint profiles and database construction. Molecular Microbial Ecology Manual (AkkermansAD, Van ElsasJD & De BruijnFJ, eds), pp. 13971443. Springer Verlag, New York.
  • Rochet V, Rigottier-Gois L, Rabot S & Doré J (2004) Validation of fluorescent in situ hybridization combined with flow cytometry for assessing interindividual variation in the composition of human fecal microflora during long-term storage of samples. J Microbiol Meth 59: 263270.
  • Roger LC (2008) Investigations into the biological succession of the infant faecal microbiota. PhD thesis, University of Reading, UK.
  • Sanguinetti CJ, Dias Neto E & Simpson AJG (1994) Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. Biotechniques 17: 914921.
  • Saulnier DM, Gibson GR & Kolida S (2008) In vitro effects of selected synbiotics on the human faecal microbiota composition. FEMS Microbiol Ecol 66: 516527.
  • Seksik P, Rigottier-Gois L, Gramet G, Sutren M, Pochart P, Marteau P, Jian R & Dore J (2003) Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon. Gut 52: 237242.
  • Simpson JM, Martineau B, Jones WE, Ballam JM & Mackie RI (2002) Characterization of fecal bacterial populations in canines: effects of age, breed and dietary fiber. Microb Ecol 44: 186197.
  • Sokol H, Seksik P, Rigottier-Gois L, Lay C, Lepage P, Podglajen I, Marteau P & Dore J (2006) Specificities of the fecal microbiota in inflammatory bowel disease. Inflamm Bowel Dis 12: 106111.
  • Suchodolski JS, Ruaux CG, Steiner JM, Fetz K & Williams DA (2005) Assessment of the qualitative variation in bacterial microflora among compartments of the intestinal tract of dogs by use of a molecular fingerprinting technique. Am J Vet Res 66: 15561562.
  • Suchodolski JS, Camacho J & Steiner JM (2008) Analysis of bacterial diversity in the canine duodenum, jejunum, ileum, and colon by comparative 16S rRNA gene analysis. FEMS Microbiol Ecol 66: 567578.
  • Vanhoutte T, Huys G, De Brandt E, Fahey GC Jr & Swings J (2005) Molecular monitoring and characterization of the faecal microbiota of healthy dogs during fructan supplementation. FEMS Microbiol Lett 249: 6571.
  • Van Verseveld HW & Röling WF (2004) Cluster analysis and statistical comparison of molecular community profile data. Molecular Microbial Ecology Manual (AkkermansAD, Van ElsasJD & De BruijnFJ, eds), pp. 13731396. Springer Verlag, New York.
  • Walker AW, Duncan SH, McWilliam Leitch EC, Child MW & Flint HJ (2005) pH and peptide supply can radically alter bacterial populations and short-chain fatty acid ratios within microbial communities from the human colon. Appl Environ Microb 71: 36923700.
  • Weese JS, Staempfli HR, Prescott JF, Kruth SA, Greenwood SJ & Weese HE (2001) The roles of Clostridium difficile and enterotoxigenic Clostridium perfringens in diarrhea in dogs. J Vet Intern Med 15: 374378.
  • Weller R, Glockner FO & Amann R (2000) 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum CytophagaFlavobacteriumBacteroides. Syst Appl Microbiol 23: 107114.
  • Westermarck E, Frias R & Skrzypczak T (2005) Effect of diet and tylosin on chronic diarrhea in Beagles. J Vet Intern Med 19: 822827.
  • Willard MD, Simpson RB, Cohen ND & Clancy JS (2000) Effects of dietary fructooligosaccharide on selected bacterial populations in feces of dogs. Am J Vet Res 61: 820825.
  • Xenoulis PG, Palculict B, Allenspach K, Steiner JM, Van House AM & Suchodolski JS (2008) Molecular–phylogenetic characterization of microbial communities imbalances in the small intestine of dogs with inflammatory bowel disease. FEMS Microbiol Ecol 66: 579589.
  • Yamka RM, Harmon DL, Schoenherr WD, Khoo C, Gross KL, Davidson SJ & Joshi DK (2006) In vivo measurement of flatulence and nutrient digestibility in dogs fed poultry by-product meal, conventional soybean meal, and low-oligosaccharide low-phytate soybean meal. Am Vet Med Assoc 67: 8894.
  • Young VB & Schmidt TM (2004) Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota. J Clin Microbiol 42: 12031206.