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  • Aymoz G, Jaffrezo JL, Chapuis D, Cozic J & Maenhaut W (2007) Seasonal variation of PM10 main constituents in two valleys of the French Alps. I: EC/OC fractions. Atmos Chem Phys 7: 661675.
  • Azam F (1998) Microbial control of oceanic carbon flux: the plot thickens. Science 280: 694696.
  • Azam F & Long RA (2001) Sea snow microcosms. Nature 414: 495498.
  • Azam F, Fenchel T, Field JG, Gray JS, Meyer-Reil LA & Thingstad TF (1983) The ecological role of water-column microbes in the sea. Mar Ecol-Prog Ser 10: 257263.
  • Beauvais S, Pedrotti ML, Villa E & Lemee R (2003) Transparent exopolymer particle (TEP) dynamics in relation to trophic and hydrological conditions in the NW Mediterranean Sea. Mar Ecol-Prog Ser 262: 97109.
  • Benner R & Strom M (1993) A critical evaluation of the analytical blank associated with DOC measurements by high-temperature catalytic oxidation. Mar Chem 41: 153160.
  • Beyenal H, Lewandowski Z & Harkin G (2004) Quantifying biofilm structure: facts and fiction. Biofouling 20: 123.
  • Bond TC, Streets DG, Yarber KF, Nelson SM, Woo JH & Klimont Z (2004) A technology-based global inventory of black and organic carbon emissions from combustion. J Geophys Res-Atmos 109: D14203, DOI: DOI: 14210.11029/12003JD003697.
  • Bongiorni L, Armeni M, Corinaldesi C, Dell'Anno A, Pusceddu A & Danovaro R (2007) Viruses, prokaryotes and biochemical composition of organic matter in different types of mucilage aggregates. Aquat Microb Ecol 49: 1523.
  • Bowman JP, McCammon SA, Brown JL & McMeekin TA (1998) Glaciecolapunicea gen. nov., sp. nov. and Glaciecolapallidula gen. nov., sp. nov.: psychrophilic bacteria from Antarctic sea-ice habitats. Int J Syst Bacteriol 48: 12131222.
  • Brakstad OG, Nonstad I, Faksness L & Brandvik PJ (2008) Responses of microbial communities in Arctic sea ice after contamination by crude petroleum oil. Microb Ecol 55: 540552.
  • Brussaard CPD, Kuipers B & Veldhuis MJW (2005) A mesocosm study of Phaeocystisglobosa population dynamics I. Regulatory role of viruses in bloom control. Harmful Algae 4: 859874.
  • Busscher H, Dijkstra R, Langwothy D, Collias D, Bjorkquist D, Michell M & Van der Mei H (2008) Interaction forces between waterborne bacteria and activated carbon particles. J Colloid Interf Sci 322: 351357.
  • Cochran PK, Kellogg CA & Paul JH (1998) Prophage induction of indigenous marine lysogenic bacteria by environmental pollutants. Mar Ecol-Prog Ser 164: 125133.
  • Cornelissen G, Gustafsson O, Bucheli TD, Jonker MTO, Koelmans AA & Van Noort PCM (2005) Extensive sorption of organic compounds to black carbon, coal, and kerogen in sediments and soils: mechanisms and consequences for distribution. Environ Sci Technol 39: 68816895.
  • Dittmar T (2008) The molecular level determination of black carbon in marine dissolved organic matter. Org Chem 39: 396407.
  • Ducklow HW (2000) Bacterial production and biomass in the oceans. Microbial Ecology of the Oceans (KirchmanDL, ed), pp. 85120. Wiley-Liss, New York.
  • Flores-Cervantes DX, Plata DL, MacFarlane JK, Reddy CM & Gschwend PM (2009) Black carbon in marine particulate organic carbon: inputs and cycling of highly recalcitrant organic carbon in the Gulf of Maine. Mar Chem 113: 172181.
  • Forbes MS, Raison RJ & Skjemstad JO (2006) Formation, transformation and transport of black carbon (charcoal) in terrestrial and aquatic ecosystems. Sci Total Environ 370: 190206.
  • Goldberg ED (1985) Black Carbon in the Environment. John Wiley, New York.
  • Green SJ (2006) A Guide to Denaturing Gradient Gel Electrophoresis. Available athttp://ddgehelp.blogspot.com/
  • Grossart HP, Kiorboe T, Tang K, Allgaier M, Yam EM & Ploug H (2006) Interactions between marine snow and heterotrophic bacteria: aggregate formation and microbial dynamics. Aquat Microb Ecol 42: 1926.
  • Guieu C, Roy-Barman M, Leblond N et al. (2005) Vertical particle flux in the northeast Atlantic Ocean (POMME experiment). J Geophys Res Oceans 110: C07S18, DOI: DOI: 10.1029/2004JC002672.
  • Halloway CF & Cowen JP (1997) Development of a scanning confocal laser microscopic technique to examine the structure and composition of marine snow. Limnol Oceanogr 42: 13401352.
  • Hammes K, Schmidt MW, Smernik R et al. (2007) Comparison of quantification methods to measure fire-derived (black/elemental) carbon in soils and sediments using reference materials from soil, water, sediment and the atmosphere. Global Biogeochem Cy 21: GB3016, DOI: DOI: 3010.1029/2006GB002914.
  • Hedges JI, Eglinton G, Hatcher PG et al. (2000) The molecularly-uncharacterized component of nonliving organic matter in natural environments. Org Geochem 31: 945958.
  • Herndl GJ (1988) Ecology of amorphous aggregations (marine snow) in the Northern Adriatic Sea. II. Microbial density and activity in marine snow and its implication to overall pelagic processes. Mar Ecol-Prog Ser 48: 265275.
  • Kepkay PE (1994) Particle aggregation and the biological reactivity of colloids. Mar Ecol-Prog Ser 109: 293304.
  • Logan BE & Wilkinson DB (1990) Fractal geometry of marine snow and other biological aggregates. Limnol Oceanogr 35: 130136.
  • Luef B, Aspetsberger F, Hein T, Huber F & Peduzzi P (2007) Impact of hydrology on free-living and particle-associated microorganisms in a river floodplain system (Danube, Austria). Freshwater Biol 52: 10431057.
  • Luef B, Neu TR & Peduzzi P (2009a) Imaging and quantifying virus fluorescence signals on aquatic aggregates: a new method and its implication for aquatic microbial ecology. FEMS Microbiol Ecol 68: 372380.
  • Luef B, Neu TR, Zweimüller I & Peduzzi P (2009b) Structure and composition of aggregates in two large Europen rivers, based on confocal laser scanning microscopy and image and statistical analysis. Appl Environ Microb 18: 59525962.
  • Malits A & Weinbauer MG (2009) Effect of turbulence and viruses on prokaryotic cell size, production and diversity. Aquat Microb Ecol 54: 243254.
  • Mannino A & Harvey HR (2004) Black carbon in estuarine and coastal ocean dissolved organic matter. Limnol Oceanogr 49: 735740.
  • Mari X, Rassoulzadegan F, Brussaard CPD & Wassmann P (2005) Dynamics of transparent exopolymeric particles (TEP) production by Phaeocystisglobosa under N- or P-limitation: a controlling factor of the retention/export balance. Harmful Algae 4: 895914.
  • Mari X, Kerros ME & Weinbauer MG (2007) Virus attachment to transparent exopolymeric particles along trophic gradients in the southwestern lagoon of New Caledonia. Appl Environ Microb 73: 52455252.
  • Masiello CA (2004) New directions in black carbon organic geochemistry. Mar Chem 92: 201213.
  • Masiello CA & Druffel ERM (1998) Black carbon in deep-sea sediments. Science 280: 19111913.
  • Mostajir M, Dolan JR & Rassoulzadegan F (1995) Seasonal variations of pico- and nano-detrital particles (DAPI Yellow Particles, DYP) in the Ligurian Sea (NW Mediterranean). Aquat Microb Ecol 9: 267277.
  • Nagata T (2008) Organic matter–bacteria interactions in seawater. Microbial Ecology of the Oceans (KirchmanDL, ed), pp. 207241. Wiley-Liss, New York.
  • Neu T, Woelfl S & Lawrence JR (2004) Three-dimensional differentiation of photo-autotrophic biofilm constituents by multi-channel laser scanning microscopy (single-photon and two-photon excitation). J Microbiol Meth 56: 161172.
  • Noble RT & Fuhrman JA (1998) Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat Microb Ecol 14: 113118.
  • Novakov T, Andreae MO, Gabriel R, Kirchstetter TW, Mayol-Bracero OL & Ramanathan V (2000) Origin of carbonaceous aerosols over the tropical Indian Ocean: biomass burning or fossil fuels? Geophys Res Lett 27: 40614064.
  • Peduzzi P & Luef B (2008) Viruses, bacteria and suspended particles in a backwater and main channel site of the Danube (Austria). Aquat Sci 70: 186194.
  • Peduzzi P & Weinbauer MG (1993) Effect of concentrating the virus-rich 2–200-nm size fraction of seawater on the formation of algal floes (marine snow). Limnol Oceanogr 38: 15621565.
  • Proctor LM & Fuhrman JA (1991) Roles of viral-infection in organic particle-flux. Mar Ecol-Prog Ser 69: 133142.
  • Ramanathan V & Carmichael G (2008) Global and regional climate changes due to black carbon. Nat Geosci 1: 221227.
  • Riemann L & Grossart HP (2008) Elevated lytic phage production as a consequence of particle colonization by a marine Flavobacterium (Cellulophaga sp.). Microb Ecol 56: 505512.
  • Samo T, Malfatti F & Azam F (2008) A new class of transparent organic particles in seawater visualized by a novel fluorescence approach. Aquat Microb Ecol 53: 307321.
  • Sandradewi J, Prevot ASH, Szidat S et al. (2008) Using aerosol light absorption measurements for the quantitative determination of wood burning and traffic emission contributions to particulate matter. Environ Sci Technol 42: 33163323.
  • Schäfer H & Muyzer G (2001) Denaturing gradient gel electrophoresis in marine microbial ecology. Methods in Microbiology, Vol. 30 (PaulJ, ed), pp. 425468. Academic Press, London.
  • Schmidt MWI & Noack AG (2000) Black carbon in soils and sediments: analysis, distribution, implications, and current challenges. Global Biogeochem Cy 14: 777793.
  • Simon M, Grossart HP, Schweitzer B & Ploug H (2002) Microbial ecology of organic aggregates in aquatic ecosystems. Aquat Microb Ecol 28: 175211.
  • Slowik JG, Cross ES, Han J-H et al. (2007) Measurements of morphology changes of fractal soot particles using coating and denuding experiments: implications for optical absorption and atmospheric lifetime. Aerosol Sci Tech 41: 734750.
  • Smith DC, Simon M, Alldredge AL & Azam F (1992) Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution. Nature 359: 139142.
  • Suttle CA & Chen F (1992) Mechanisms and rates of decay of marine viruses in seawater. Appl Environ Microb 58: 37513729.
  • Van Trappen S, Tan T, Yang J, Mergaert J & Swings J (2004) Glaciecola polaris sp. nov., a novel budding and prosthecate bacterium from the Arctic Ocean, and emended description of the genus Glaciecola. Int J Syst Evol Micr 54: 17651771.
  • Verdugo P, Alldredge AL, Azam F, Kirchman D, Passow U & Santschi PH (2004) The oceanic gel phase: a bridge in the DOM–POM continuum. Mar Chem 92: 6785.
  • Weinbauer MG (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28: 127181.
  • Weinbauer MG, Bettarel Y, Cattaneo R, Luef B, Maier C, Motegi C, Peduzzi P & Mari X (2009) Viral ecology of organic and inorganic particles in aquatic systems: avenues for further research. Aquat Microb Ecol 57: 321341.
  • Wilhelm SW & Suttle CA (1999) Viruses and nutrient cycles in the sea. Bioscience 49: 781788.
  • Winter C, Moeseneder MM & Herndl GJ (2001) Impact of UV radiation on bacterioplankton community composition. Appl Environ Microb 67: 665672.
  • Yentsch CS & Yentsch CM (2008) Single cell analysis in biological oceanography and its evolutionary implications. J Plankton Res 30: 107117.