• An D, Dong X & Dong Z (2005) Prokaryote diversity in the rumen of yak (Bos grunniens) and Jinnan cattle (Bos taurus) estimated by 16S rDNA homology analyses. Anaerobe 11: 207215.
  • CCAC (1993) Guide to the Care and Use of Experimental Animals. Canadian Council on Animal Care, Ottawa, ON, Canada.
  • Cho SJ, Cho KM, Shin EC, Lim WJ, Hong SY, Choi BR, Kang JM, Lee SM (2006) 16S rDNA analysis of bacterial diversity in three fractions of cow rumen. J Microbiol Biotechnol 16: 92101.
  • Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM & Tiedje JM (2005) The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33: D294D296.
  • Davis KH & Weightman RM (2008) Triticale as a low input cereal for alcohol production. 1. Alcohol yields and processing quality of triticale varieties grown under UK conditions. Asp Appl Biol 90: 135142.
  • Edwards E, McEwan NR, Travis AJ & Wallace RJ (2004) 16S rDNA library-based analysis of ruminal bacterial diversity. Antonie van Leeuwenhoek 86: 263281.
  • Koike S, Yoshitani S, Kobayashi Y & Tanaka K (2003) Phylogenetic analysis of fiber-associated rumen bacterial community and PCR detection of uncultured bacteria. FEMS Microbiol Lett 229: 2330.
  • Larue R, Yu Z, Parisi VA, Egan AR & Morrison M (2005) Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environ Microbiol 7: 530543.
  • Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 13631371.
  • Marchesi JR, Sato T, Weightman AJ, Martin TA, Fry JC, Hiom SJ & Wade WG (1998) Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microb 64: 795799.
  • Nelson KE, Zinder SH, Hance I, Burr P, Odongo D, Wasawo D, Odenyo A & Bishop R (2003) Phylogenetic analysis of the microbial populations in the wild herbivore gastrointestinal tract: insights into an unexplored niche. Environ Microbiol 5: 12121220.
  • Pruesse E, Quast C, Knittel K, Fuchs B, Ludwig W, Peplies J & Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 71887196.
  • Russell JB & Hespell RB (1981) Microbial rumen fermentation. J Dairy Sci 64: 11531169.
  • Sadet S, Martina C, Meunier B & Morgavi D (2007) PCR-DGGE analysis reveals a distinct diversity in the bacterial population attached to the rumen epithelium. Animal 1: 939944.
  • Schloss PD & Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microb 71: 15011506.
  • Schloss PD & Handelsman J (2006) Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures. Appl Environ Microb 72: 67736779.
  • Schloss PD, Larget BR & Handelsman J (2004) Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microb 70: 54855492.
  • Sheaffer CC, Martin NP, Lamb JFS, Cuomo GR, Jewett JG & Quering SR (2000) Leaf and stem properties of alfalfa entries. Agron J 92: 733739.
  • Tajima K, Aminov RI, Nagamine T, Ogata K, Nakamura M, Matsui H & Benno Y (1999) Rumen bacterial diversity as determined by sequence analysis of 16S rDNA libraries. FEMS Microbiol Ecol 29: 159169.
  • Tajima K, Arai S, Ogata K, Nagamine T, Matsui H, Nakamura M, Aminov RI & Benno Y (2000) Rumen bacterial community transition during adaptation to high-grain diet. Anaerobe 6: 273284.
  • Tajima K, Aminov RI, Nagamine T, Matsui H, Nakamura M & Benno Y (2001) Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl Environ Microb 67: 27662774.
  • Tajima K, Nonaka I, Higuchi K, Takusari N, Kurihara M, Takenaka A, Mitsumori M, Kajikawa H & Aminov RI (2007) Influence of high temperature and humidity on rumen bacterial diversity in Holstein heifers. Anaerobe 13: 5764.
  • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961599.
  • Whitford MF, Forster RJ, Beard CE, Gong J & Teather RM (1998) Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe 4: 153163.