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  • Allen HK, Donato J, Wang HH, Cloud-Hansen KA, Davies J & Handelsman J (2010) Call of the wild: antibiotic resistance genes in natural environments. Nat Rev Microbiol 8: 251259.
  • Bally M & Garrabou J (2007) Thermodependent bacterial pathogens and mass mortalities in temperate benthic communities: a new case of emerging disease linked to climate change. Glob Change Biol 13: 20782088.
  • Ben-Haim Y, Zicherman-Keren M & Rosenberg E (2003) Temperature-regulated bleaching and lysis of the coral Pocillopora damicornis by the novel pathogen Vibrio coralliilyticus. Appl Environ Microb 69: 42364242.
  • Brück TB, Brück WM, Santiago-Vazquez LZ, McCarthy PJ & Kerr RG (2007) Diversity of the bacterial communities associated with the azooxanthellate deep water octocorals Leptogorgia minimata, Iciligorgia schrammi, and Swiftia exertia. Mar Biotechnol 9: 561576.
  • Chimetto LA, Brocchi M, Thompson CC, Martins RCR, Ramos HR & Thompson FL (2008) Vibrios dominate as culturable nitrogen-fixing bacteria of the Brazilian coral Mussismilia hispida. Syst Appl Microbiol 31: 312319.
  • Dang H, Ren J, Song L, Sun S & An L (2008) Dominant chloramphenicol-resistant bacteria and resistance genes in coastal marine waters of Jiaozhou Bay, China. World J Microb Biot 24: 209217.
  • Davies AJ, Roberts JM & Hall-Spencer J (2007) Preserving deep-sea natural heritage: emerging issues in offshore conservation and management. Biol Conserv 138: 299312.
  • Davies J, Spiegelman GB & Yim G (2006) The world of subinhibitory antibiotic concentrations. Curr Opin Microbiol 9: 445453.
  • DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P & Andersen GL (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microb 75: 50695072.
  • Dobretsov S & Qian P-Y (2004) The role of epibiotic bacteria from the surface of the soft coral Dendronephthya sp. in the inhibition of larval settlement. J Exp Mar Biol Ecol 299: 3550.
  • Edwards U, Rogall T, Blöcker H, Emde M & Böttger EC (1989) Isolation and direct complete nucleotide determination of entire genes: characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17: 78437853.
  • Ewing B & Green P (1998) Basecalling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186194.
  • Ewing B, Hillier L, Wendl M & Green P (1998) Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175185.
  • Fajardo A, Linares JF & Martinez JL (2009) Towards an ecological approach to antibiotics and antibiotic resistance genes. Clin Microbiol Infec 15: 1416.
  • Freiwald A (2002) Reef-forming cold-water corals. Ocean Margin Systems (WeferG, BillettD, HebbelnD, JorgensenBB, SchluterM & WeeringTv, eds.), pp. 365385. Springer-Verlag, Berlin.
  • Freiwald A & Roberts JM (2005) Cold-Water Corals and Ecosystems. Springer, Berlin.
  • Fuhrman JA & Campbell L (1998) Microbial microdiversity. Nature 393: 410411.
  • Gray MA, Stone RP, McLaughlin MR & Kellogg CA (2011) Microbial consortia of gorgonian corals from the Aleutian Islands. FEMS Microbiol. Ecol 76: 109120.
  • Hall-Spencer JM, Pike J & Munn CB (2007) Diseases affect cold-water corals too: Eunicella verrucosa (Cnidaria: Gorgonacea) necrosis in SW England. Dis Aquat Organ 76: 8797.
  • Hansson L, Agis M, Maier C & Weinbauer MG (2009) Community composition of bacteria associated with cold-water coral Madrepora oculata: within and between colony variability. Mar Ecol Prog Ser 397: 89102.
  • Kellogg CA, Lisle J & Galkiewicz JP (2009) Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico. Appl Environ Microb 75: 22942303.
  • Kushmaro A, Rosenberg E, Fine M & Loya Y (1997) Bleaching of the coral Oculina patagonica by Vibrio shiloi AK-1. Mar Ecol Prog Ser 147: 159165.
  • Lampert Y, Kelman D, Dubinsky Z, Nitzan Y & Hill RT (2006) Diversity of culturable bacteria in the mucus of the Red Sea coral Fungia scutaria. FEMS Microbiol Ecol 58: 99108.
  • Lee OO, Yang LH, Li X, Pawlik JR & Qian P-Y (2007) Surface bacterial community, fatty acid profile, and antifouling activity of two congenergic sponges from Hong Kong and the Bahamas. Mar Ecol Prog Ser 339: 2540.
  • Lumsden SE, Hourigan TF, Bruckner AW & Dorr G (2007) The state of deep coral ecosystems of the United States. NOAA Technical Memorandum CRCP-3. Silver Spring, Maryland.
  • Mangano S, Michaud L, Caruso C, Brilli M, Bruni V, Fani R & Giudice AL (2009) Antagonistic interactions between psychrotrophic cultivable bacteria isolated from Antarctic sponges: a preliminary analysis. Res Microbiol 160: 2737.
  • Mao-Jones J, Ritchie KB, Jones LE & Ellner SP (2010) How microbial community composition regulates coral disease development. PLoS Biology 8: e1000345.
  • Menezes CBA, Bonugli-Santos RC, Miqueletto PB et al. (2009) Microbial diversity associated with algae, ascidians and sponges from the north coast of Sao Paulo state, Brazil. Microbiol Res 165: 466482.
  • Neulinger SC, Jarnegren J, Ludvigsen M, Lochte K & Dullo W-C (2008) Phenotype-specific bacterial communities in the cold-water coral Lophelia pertusa (Scleractinia) and their implications for the coral's nutrition, health, and distribution. Appl Environ Microbiol 74: 72727285.
  • Neulinger SC, Gartner A, Jarnegren J, Ludvigsen M, Lochte K & Dullo W-C (2009) Tissue-associated ‘Candidatus Mycoplasma corallicola’ and filamentous bacteria on the cold-water coral Lophelia pertusa (Scleractinia). Appl Environ Microbiol 75: 14371444.
  • Pollock FJ, Wilson B, Johnson WR, Morris PJ, Willis BL & Bourne DG (2010) Phylogeny of the coral pathogen Vibrio coralliilyticus. Env Microbiol Rep 2: 172178.
  • Raina J-B, Tapiolas D, Willis BL & Bourne DG (2009) Coral-associated bacteria and their role in the biogeochemical cycling of sulfur. Appl Environ Microbiol 75: 34923501.
  • Reed JK (2002a) Deep-water Oculina coral reefs of Florida: biology, impacts, and management. Hydrobiologia 471: 4355.
  • Reed JK (2002b) Comparison of deep-water coral reefs and lithoherms off southeastern USA. Hydrobiologia 471: 5769.
  • Reshef L, Koren O, Loya Y, Zilber-Rosenberg I & Rosenberg E (2006) The coral probiotic hypothesis. Environ Microbiol 8: 20682073.
  • Ritchie KB (2006) Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Prog Ser 322: 114.
  • Ritchie KB & Smith GW (1995) Preferential carbon utilization by surface bacterial communities from water mass, normal, and white-band diseased Acropora cervicornis. Mol Mar Biol Biotech 4: 345352.
  • Roberts S & Hirshfield M (2004) Deep-sea corals: out of sight, but no longer out of mind. Front Ecol Environ 2: 123130.
  • Roberts JM, Wheeler AJ & Freiwald A (2006) Reefs of the deep: the biology and geology of cold-water coral ecosystems. Science 312: 543547.
  • Rohwer F, Breitbart M, Jara J, Azam F & Knowlton N (2001) Diversity of bacteria associated with the Caribbean coral Montastraea franksi. Coral Reefs 20: 8591.
  • Schöttner S, Hoffman F, Wild C, Rapp HT, Boetius A & Ramette A (2009) Inter- and intra-habitat bacterial diversity associated with cold-water corals. ISME J 3: 756759.
  • Smith GW & Hayasaka SS (1982) Nitrogenase activity associated with Halodule wrighti roots. Appl Environ Microbiol 43: 12441248.
  • Stackebrandt E & Liesack W (1993) Nucleic acids and classification. Handbook of New Bacterial Systematics (GoodfellowM & O'DonnellAG, eds.), pp. 152189. Academic Press, London.
  • Staley JT (2006) The bacterial species dilemma and the genomic-phylogenetic species concept. Philos T Roy Soc B 361: 18991909.
  • Synnes M (2007) Bioprospecting of organisms from the deep sea: scientific and environmental aspects. Clean Tech Environ Policy 9: 5359.
  • Tettelin H, Masignani V, Cieslewicz MJ et al. (2005) Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial ‘pan-genome’. P Natl Acad Sci USA 102: 1395013955.
  • Thomas CM & Nielsen KM (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol 3: 711721.
  • Thompson FL, Gevers D, Thompson CC, Dawyndt P, Naser S, Hoste B, Munn CB & Swings J (2005) Phylogeny and molecular identification of Vibrios on the basis of multilocus sequence analysis. Appl Environ Microbiol 71: 51075155.
  • Thurber RV, Willner-Hall D, Rodriguez-Mueller B, Desnues C, Edwards RA, Angly F, Dinsdale E, Kelly L & Rohwer F (2009) Metagenomic analysis of stressed coral holobionts. Environ Microbiol 11: 21482163.
  • Weingarten-Arams J & Adam HM (2002) Clindamycin. Pediatr Rev 23: 149150.
  • Yakimov MM, Cappello S, Crisafi E, Tursi A, Savini A, Corselli C, Scarfi S & Giuliano L (2006) Phylogenetic survey of metabolically active microbial communities associated with the deep-sea coral Lophelia pertusa from the Apulian plateau, Central Mediterranean Sea. Deep-Sea Res 53: 6275.
  • Yim G, Wang HH & Davies J (2007) Antibiotics as signalling molecules. Philos T Roy Soc B 362: 11951200.
  • Yu Y, Breitbart M, McNairnie P & Rohwer F (2006) FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioinformatics 7: 57.