SEARCH

SEARCH BY CITATION

References

  • Allen TD, Caldwell ME, Lawson PA, Huhnke RL & Tanner RS (2010) Alkalibaculum bacchi gen. nov., sp. nov., a CO-oxidizing, ethanol-producing acetogen isolated from livestock-impacted soil. Int J Syst Evol Microbiol 60: 24832489.
  • Balk M, van Gelder T, Weelink SA & Stams AJA (2008) (Per)chlorate reduction by the thermophilic bacterium Moorella perchloratireducens sp nov., isolated from underground gas storage. Appl Environ Microbiol 74: 403409.
  • Barker HA & Kamen MD (1945) Carbon dioxide utilization in the synthesis of acetic acid by Clostridium thermoaceticum. P Natl Acad Sci USA 31: 219225.
  • Blair NE & Carter WD (1992) The carbon isotope biogeochemistry of acetate from a methanogenic marine sediment. Geochim Cosmochim Acta 56: 12471258.
  • Blair NE, Martens CS & Desmarais DJ (1987) Natural abundances of carbon isotopes in acetate from a coastal marine sediment. Science 236: 6668.
  • Boutton T (1991) Stable carbon isotope ratios of natural materials: II. Atmospheric, terrestrial, marine, and freshwater environments. Carbon Isotope Techniques (Coleman D & Fry B, eds), pp. 173183. Academic Press, Inc, San Diego, CA.
  • Chasar LS, Chanton JP, Glaser PH & Siegel DI (2000) Methane concentration and stable isotope distribution as evidence of rhizospheric processes: comparison of a fen and bog in the Glacial Lake Agassiz peatland complex. Ann Bot 86: 655663.
  • Conrad R (2005) Quantification of methanogenic pathways using stable carbon isotopic signatures: a review and a proposal. Org Geochem 36: 739752.
  • Conrad R & Klose M (2011) Stable carbon isotope discrimination in rice field soil during acetate turnover by syntrophic acetate oxidation or acetoclastic methanogenesis. Geochim Cosmochim Acta 75: 15311539.
  • Conrad R, Bak F, Seitz HJ, Thebrath B, Mayer HP & Schutz H (1989) Hydrogen turnover by psychrotrophic homoacetogenic and mesophilic methanogenic bacteria in anoxic paddy soil and lake sediment. FEMS Microbiol Ecol 62: 285294.
  • Conrad R, Klose M & Claus P (2002) Pathway of CH4 formation in anoxic rice field soil and rice roots determined by 13C-stable isotope fractionation. Chemosphere 47: 797806.
  • Cord-Ruwisch R, Seitz HJ & Conrad R (1988) The capacity of hydrogenotrophic anaerobic-bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron-acceptor. Arch Microbiol 149: 350357.
  • Drake HL (1994) Acetogenesis, acetogenic bacteria, and the acetyl-CoA “Wood/Ljungdahl” pathway: past and current perspectives. Acetogenesis (Drake HL, eds), pp. 360. Chapman & Hall, New York, NY.
  • Drake HL, Küsel K & Matthies C (2006) Acetogenic prokaryotes. The Prokaryotes, Vol. 2 (Dworkin M, Falkow S, Rosenberg E, Schleifer K-H & Stackebrandt E, eds), pp. 354420. Springer Verlag, New York.
  • Drake HL, Horn MA & Wüst PK (2009) Intermediary ecosystem metabolism as a main driver of methanogenesis in acidic wetland soil. Environ Microbiol Rep 1: 307318.
  • Fey A, Claus P & Conrad R (2004) Temporal change of 13C-isotope signatures and methanogenic pathways in rice field soil incubated anoxically at different temperatures. Geochim Cosmochim Acta 68: 293306.
  • Fontaine F, Peterson W, McCoy E, Johnson M & Ritter G (1942) A new type of glucose fermentation by Clostridium thermoaceticum. J Bacteriol 43: 701715.
  • Frei S, Lischeid G & Fleckenstein JH (2010) Effects of micro-topography on surface-subsurface exchange and runoff generation in a virtual riparian wetland – a modeling study. Adv Water Resour 33: 13881401.
  • Gagen EJ, Denman SE, Padmanabha J, Zadbuke S, Al Jassim R, Morrison M & McSweeney CS (2010) Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach. Appl Environ Microbiol 76: 77857795.
  • Gelwicks JT, Risatti JB & Hayes JM (1989) Carbon isotope effects associated with autotrophic acetogenesis. Org Geochem 14: 441446.
  • Gelwicks JT, Risatti JB & Hayes JM (1994) Carbon-isotope effects associated with aceticlastic methanogenesis. Appl Environ Microbiol 60: 467472.
  • Goevert D & Conrad R (2008) Carbon isotope fractionation by sulfate-reducing bacteria using different pathways for the oxidation of acetate. Environ Sci Technol 42: 78137817.
  • Gorham E (1991) Northern peatlands – role in the carbon-cycle and probable responses to climatic warming. Ecol Appl 1: 182195.
  • Göβner AS, Devereux R, Ohnemüller N, Acker G, Stackebrandt E & Drake HL (1999) Thermicanus aegyptius gen. nov., sp nov., isolated from oxic soil, a fermentative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica. Appl Environ Microbiol 65: 51245133.
  • Gottschalk G (1986) Bacterial Metabolism. Springer-Verlag, New York.
  • Hamberger A, Horn MA, Dumont MG, Murrell JC & Drake HL (2008) Anaerobic consumers of monosaccharides in a moderately acidic fen. Appl Environ Microbiol 74: 31123120.
  • Hattori S (2008) Syntrophic acetate-oxidizing microbes in methanogenic environments. Microbes Environ 23: 118127.
  • Hedderich R & Whitman W (2006) Physiology and biochemistry of the methane-producing archaea. The Prokaryotes (Dworkin M, Falkow S, Rosenberg E, Schleifer K-H & Stackebrandt E, eds), pp. 10501079. Springer, New York.
  • Henderson G, Naylor GE, Leahy SC & Janssen PH (2010) Presence of novel, potentially homoacetogenic bacteria in the rumen as determined by analysis of formyltetrahydrofolate synthetase sequences from ruminants. Appl Environ Microbiol 76: 20582066.
  • Henstra AM, Dijkema C & Stams AJM (2007) Archaeoglobus fulgidus couples CO oxidation to sulfate reduction and acetogenesis with transient formate accumulation. Environ Microbiol 9: 18361841.
  • Heuer VB, Elvert M, Tille S, Krummen M, Mollar XP, Hmelo LR & Hinrichs KU (2006) Online delta 13C-analysis of volatile fatty acids in sediment/porewater systems by liquid chromatography-isotope ratio mass spectrometry. Limnol Oceanogr Methods 4: 346357.
  • Heuer VB, Pohlman JW, Torres ME, Elvert M & Hinrichs KU (2009) The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin. Geochim Cosmochim Acta 73: 33233336.
  • Heuer VB, Krüger M, Elvert M & Hinrichs KU (2010) Experimental studies on the stable carbon isotope biogeochemistry of acetate in lake sediments. Org Geochem 41: 2230.
  • Hornibrook ERC, Longstaffe FJ & Fyfe WS (1997) Spatial distribution of microbial methane production pathways in temperate zone wetland soils: stable carbon and hydrogen isotope evidence. Geochim Cosmochim Acta 61: 745753.
  • Hornibrook ERC, Longstaffe FJ & Fyfe WS (2000) Evolution of stable carbon isotope compositions for methane and carbon dioxide in freshwater wetlands and other anaerobic environments. Geochim Cosmochim Acta 64: 10131027.
  • Huber T, Faulkner G & Hugenholtz P (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 23172319.
  • Hunger S, Schmidt O, Hilgarth M, Horn MA, Conrad R & Drake HL (2011) Competing formate- and carbon dioxide-utilizing prokaryotes in an anoxic methane-emitting fen soil. Appl Environ Microbiol 77: 37733785.
  • Karnholz A, Küsel K, Göβner A, Schramm A & Drake HL (2002) Tolerance and metabolic response of acetogenic bacteria toward oxygen. Appl Environ Microbiol 68: 10051009.
  • Kerby R & Zeikus JG (1983) Growth of Clostridium thermoaceticum on H2/CO2 or CO as energy-source. Curr Microbiol 8: 2730.
  • Knorr KH, Glaser B & Blodau C (2008) Fluxes and 13C-isotopic composition of dissolved carbon and pathways of methanogenesis in a fen soil exposed to experimental drought. Biogeosciences 5: 14571473.
  • Kotsyurbenko OR (2005) Trophic interactions in the methanogenic microbial community of low-temperature terrestrial ecosystems. FEMS Microbiol Ecol 53: 313.
  • Krüger M, Eller G, Conrad R & Frenzel P (2002) Seasonal variation in pathways of CH4 production and in CH4 oxidation in rice fields determined by stable carbon isotopes and specific inhibitors. Global Change Biol 8: 265280.
  • Krummen M, Hilkert AW, Juchelka D, Duhr A, Schluter HJ & Pesch R (2004) A new concept for isotope ratio monitoring liquid chromatography/mass spectrometry. Rapid Commun Mass Spectrom 18: 22602266.
  • Kuhner CH, Frank C, Griesshammer A, Schmittroth M, Acker G, Göβner A & Drake HL (1997) Sporomusa silvacetica sp nov, an acetogenic bacterium isolated from aggregated forest soil. Int J Syst Bacteriol 47: 352358.
  • Küsel K & Drake HL (1995) Effects of environmental parameters on the formation and turnover of acetate by forest soils. Appl Environ Microbiol 61: 36673675.
  • Küsel K, Karnholz A, Trinkwalter T, Devereux R, Acker G & Drake HL (2001) Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots. Appl Environ Microbiol 67: 47344741.
  • Küsel K, Blöthe M, Schulz D, Reiche M & Drake HL (2008) Microbial reduction of iron and porewater biogeochemistry in acidic peatlands. Biogeosciences 5: 15371549.
  • Leaphart AB & Lovell CR (2001) Recovery and analysis of formyltetrahydrofolate synthetase gene sequences from natural populations of acetogenic bacteria. Appl Environ Microbiol 67: 13921395.
  • Leaphart AB, Friez MJ & Lovell CR (2003) Formyltetrahydrofolate synthetase sequences from salt marsh plant roots reveal a diversity of acetogenic bacteria and other bacterial functional groups. Appl Environ Microbiol 69: 693696.
  • Lee MJ & Zinder SH (1988) Hydrogen partial pressures in a thermophilic acetate-oxidizing methanogenic coculture. Appl Environ Microbiol 54: 14571461.
  • Lessner DJ, Li LY, Li QB, Rejtar T, Andreev VP, Reichlen M, Hill K, Moran JJ, Karger BL & Ferry JG (2006) An unconventional pathway for reduction of CO2 to methane in CO-grown Methanosarcina acetivorans revealed by proteomics. P Natl Acad Sci USA 103: 1792117926.
  • Lever MA, Heuer VB, Morono Y, Masui N, Schmidt F, Alperin MJ, Inagaki F, Hinrichs KU & Teske A (2010) Acetogenesis in deep subseafloor sediments of the Juan de Fuca Ridge Flank: a synthesis of geochemical, thermodynamic, and gene-based evidence. Geomicrobiol J 27: 183211.
  • Lovell CR & Leaphart AB (2005) Community-level analysis: key genes of CO2-reductive acetogenesis. Environ Microbiol 397: 454469.
  • Lovell CR, Przybyla A & Ljungdahl LG (1990) Primary structure of the thermostable formyltetrahydrofolate synthetase from Clostridium thermoaceticum. Biochemistry 29: 56875694.
  • Loy A, Küsel K, Lehner A, Drake HL & Wagner M (2004) Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages. Appl Environ Microbiol 70: 69987009.
  • Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 13631371.
  • Luli GW & Strohl WR (1990) Comparison of growth, acetate production, and acetate inhibition of Escherichia-coli strains in batch and fed-batch fermentations. Appl Environ Microbiol 56: 10041011.
  • Matsui H, Yoneda S, Ban-Tokuda T & Wakita M (2010) Diversity of the formyltetrahydrofolate synthetase (FTHFS) gene in the proximal and mid ostrich colon. Curr Microbiol 62: 16.
  • McInerney M & Bryant M (1981) Anaerobic degradation of lactate by syntrophic associations of Methanosarcina barkeri and Desulfovibrio species and effect of H2 on acetate degradation. Appl Environ Microbiol 41: 346354.
  • Nedwell DB & Watson A (1995) CH4 production, oxidation and emission in a UK ombrotrophic peat bog - Influence of SO42- from acid-rain. Soil Biol Biochem 27: 893903.
  • Ottesen EA & Leadbetter JR (2010) Diversity of formyltetrahydrofolate synthetases in the guts of the wood-feeding cockroach Cryptocercus punctulatus and the omnivorous cockroach Periplaneta americana. Appl Environ Microbiol 76: 49094913.
  • Paul S, Küsel K & Alewell C (2006) Reduction processes in forest wetlands: tracking down heterogeneity of source/sink functions with a combination of methods. Soil Biol Biochem 38: 10281039.
  • Penning H & Conrad R (2006) Carbon isotope effects associated with mixed-acid fermentation of saccharides by Clostridium papyrosolvens. Geochim Cosmochim Acta 70: 22832297.
  • Pester M & Brune A (2006) Expression profiles of fhs (FTHFS) genes support the hypothesis that spirochaetes dominate reductive acetogenesis in the hindgut of lower termites. Environ Microbiol 8: 12611270.
  • Peters V & Conrad R (1995) Methanogenic and other strictly anaerobic bacteria in desert soil and other oxic soils. Appl Environ Microbiol 61: 16731676.
  • Popp TJ, Chanton JP, Whiting GJ & Grant N (1999) Methane stable isotope distribution at a Carex dominated fen in north central Alberta. Global Biogeochem Cycles 13: 10631077.
  • Rabus R, Hansen T & Widdel F (2006) Dissimilatory sulfate- and sulfur-reducing prokaryotes. The Prokaryotes, Vol. 2 (Dworkin M, Falkow S, Rosenberg E, Schleifer K-H & Stackebrandt E, eds), pp. 659768. Springer, New York, NY.
  • Reiche M, Torborg G & Küsel K (2008) Competition of Fe(III) reduction and methanogenesis in an acidic fen. FEMS Microbiol Ecol 65: 88101.
  • Reiche M, Hädrich A, Lischeid G & Küsel K (2009) Impact of manipulated drought and heavy rainfall events on peat mineralization processes and source-sink functions of an acidic fen. J Geophys Res 114: G02021.
  • Reiche M, Gleixner G & Küsel K (2010) Effect of peat quality on microbial greenhouse gas formation in an acidic fen. Biogeosciences 7: 187198.
  • Rooney-Varga JN, Giewat MW, Duddleston KN, Chanton JP & Hines ME (2007) Links between archaeal community structure, vegetation type and methanogenic pathway in Alaskan peatlands. FEMS Microbiol Ecol 60: 240251.
  • Rydin H & Jeglum J (2006) The Biology of Peatlands. Oxford University Press, Oxford.
  • Salmassi TM & Leadbetter JR (2003) Analysis of genes of tetrahydrofolate-dependent metabolism from cultivated spirochaetes and the gut community of the termite Zootermopsis angusticollis. Microbiology 149: 25292537.
  • Schauder R, Preuss A, Jetten M & Fuchs G (1989) Oxidative and reductive acetyl CoA/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum. 2. Demonstration of the enzymes of the pathway and comparison of CO dehydrogenase. Arch Microbiol 151: 8489.
  • Schloss PD & Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 15011506.
  • Schmalenberger A, Drake HL & Küsel K (2007) High unique diversity of sulfate-reducing prokaryotes characterized in a depth gradient in an acidic fen. Environ Microbiol 9: 13171328.
  • Singleton DR, Furlong MA, Rathbun SL & Whitman WB (2001) Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67: 43744376.
  • Smemo KA & Yavitt JB (2007) Evidence for anaerobic CH4 oxidation in freshwater peatlands. Geomicrobiol J 24: 583597.
  • Strom L, Ekberg A, Mastepanov M & Christensen TR (2003) The effect of vascular plants on carbon turnover and methane emissions from a tundra wetland. Global Change Biol 9: 11851192.
  • Sugimoto A & Wada E (1993) Carbon isotopic composition of bacterial methane in a soil incubation experiment - contributions of acetate and CO2/H2. Geochim Cosmochim Acta 57: 40154027.
  • Tamura H, Goto K, Yotsuyanagim T & Nagayama M (1974) Spectrophotometric determination of iron(II) with 1,10-phenanthroline in the presence of large amounts of iron(III). Talanta 21: 314318.
  • Tschech A & Pfennig N (1984) Growth-yield increase linked to caffeate reduction in Acetobacterium woodii. Arch Microbiol 137: 163167.
  • Wagner C, Griesshammer A & Drake HL (1996) Acetogenic capacities and the anaerobic turnover of carbon in a Kansas prairie soil. Appl Environ Microbiol 62: 494500.
  • Wellsbury P, Mather I & Parkes R (2002) Geomicrobiology of deep, low organic carbon sediments in the Woodlark Basin, Pacific Ocean. FEMS Microbiol Ecol 42: 5970.
  • Whiticar MJ (1999) Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane. Chem Geol 161: 291314.
  • Wüst PK, Horn MA & Drake HL (2009) Trophic links between fermenters and methanogens in a moderately acidic fen soil. Environ Microbiol 11: 13951409.
  • Xu KW, Liu H, Du GC & Chen J (2009) Real-time PCR assays targeting formyltetrahydrofolate synthetase gene to enumerate acetogens in natural and engineered environments. Anaerobe 15: 204213.