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  • Abdo Z, Schuette UME, Bent SJ, Williams CJ, Forney LJ & Joyce P (2006) Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Environ Microbiol 8: 929938.
  • Adlam LS (2010) Soil climate and permafrost temperature monitoring in the McMurdo Sound region of Antarctica. MSc Thesis, University of Waikato, Hamilton, New Zealand.
  • Ah Tow L & Cowan DA (2005) Dissemination and survival of non-indigenous bacterial genomes in pristine Antarctic environments. Extremophiles 9: 385389.
  • Aislabie JM, Chhour KL, Saul DJ, Miyauchi S, Ayton J, Paetzold RF & Balks MR (2006) Dominant bacteria in soils of Marble Point and Wright Valley, Victoria Land, Antarctica. Soil Biol Biochem 38: 30413056.
  • Aislabie JM, Jordan S & Barker GM (2008) Relation between soil classification and bacterial diversity in soils of the Ross Sea region, Antarctica. Geoderma 144: 920.
  • Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403410.
  • Azúa-Bustos A, González-Silva C, Mancilla RA, Salas L, Gómez-Silva B, McKay CP & Vicuña R (2011) Hypolithic Cyanobacteria supported mainly by fog in the coastal range of the Atacama Desert. Microb Ecol 61: 568581.
  • Bahl J, Lau MCY, Dhanesakaran V et al. (2011) Ancient origins determine global biogeography of hot and cold desert cyanobacteria. Nat Commun 2: 163.
  • Barrett JE, Virginia RA, Parsons AN & Wall DH (2005) Potential carbon and nitrogen turnover in soils of the McMurdo Dry Valleys, Antarctica. Arct Antarct Alp Res 37: 107116.
  • Barrett JE, Virginia RA, Lyons WB, McKnight DM, Priscu JC, Doran PT, Fountain AG, Wall DH & Moorhead DL (2007) Biogeochemical stoichiometry of Antarctic Dry Valley ecosystems. J Geophys Res 112: G01010.
  • Bockheim JG (1995) Permafrost zonation in the Southern Circumpolar Region and its relation to the environment: a review and recommendations for further research. Permafrost Periglac 6: 2745.
  • Bockheim JG (1997) Properties and classification of cold desert soils from Antarctica. Soil Sci Soc Am J 61: 224231.
  • Bockheim JG (2002) Landform and soil development in the McMurdo Dry Valleys, Antarctica: a regional synthesis. Arct Antarct Alp Res 34: 308317.
  • Bockheim JG (2008) Functional diversity of soils along environmental gradients in the Ross Sea region, Antarctica. Geoderma 144: 3242.
  • Bockheim JG & Tarnocai C (1998) Nature, occurrence and origin of dry permafrost. Proc. Seventh International Conference on Permafrost (Lewkowicz AG & Allard M, eds), pp. 5764. Collection Nordicana (Université Leval), 57.
  • Boyd WL, Staley JT & Boyd JW (1966) Antarctic soils and soil forming processes. Antarctic Res Ser 8: 125159.
  • Burkins MB, Virginia RA, Chamberlain CP & Wall DH (2000) Origin and distribution of soil organic matter in Taylor Valley, Antarctica. Ecology 81: 23772391.
  • Cameron RE, King J & David CN (1970) Microbiology, ecology and microclimatology of soil sites in Dry Valleys of Southern Victoria Land, Antarctica. Antarctic Ecology (Holdgate MW, ed), pp. 702716. Academic Press, New York.
  • Campbell IB & Claridge GGC (1987) Antarctica: soils, weathering processes and environment. Developments in Soil Science, Vol. 16 (Campbell IB & Claridge GGC, eds), p. 368. Elsevier Science, Amsterdam.
  • Campbell IB, Claridge GGC & Balks MR (1994) The effect of human activities on moisture content of soils and underlying permafrost from the McMurdo Sound region, Antarctica. Antarct Sci 6: 307316.
  • Campbell IB, Claridge GGC, Campbell DI & Balks MR (1998) The soil environment of the McMurdo Dry Valleys, Antarctica. The McMurdo Dry Valleys, Antarctica: A Polar Desert Ecosystem (Priscu J, ed), 72, pp. 297322. American Geophysical Union, Antarct Res Ser, Washington, DC.
  • Cary SC, McDonald IR, Barrett JE & Cowan DA (2010) On the rocks: the microbiology of Antarctic Dry Valley soils. Nat Rev Microbiol 8: 129138.
  • Casanueva A, Tuffin M, Cary C & Cowan DA (2010) Molecular adaptations to psychrophily: the impact of ‘omic’ technologies. Trends Microbiol 18: 374381.
  • Claridge GGC & Campbell IB (1977) The salts in Antarctic soils, their distribution and relationship to soil processes. Soil Sci 123: 377384.
  • Clarke KR & Gorley RN (2006) PRIMER v6: User Manual/Tutorial. PRIMER-E, Plymouth, UK.
  • Cowan DA (2009) Cryptic microbial communities in Antarctic deserts. P Natl Acad Sci USA 106: 1974919750.
  • Cowan DA & Casanueva A (2007) Stability of ATP in Antarctic mineral soils. Polar Biol 30: 15991603.
  • Cowan DA, Russell N, Mamais A & Sheppard D (2002) Antarctic Dry Valley mineral soils contain unexpectedly high levels of microbial biomass. Extremophiles 6: 431436.
  • Cowan DA, Pointing SB, Stevens MI, Cary CS, Stomeo F & Tuffin IM (2010) Distribution and abiotic influences on hypolithic microbial communities in an Antarctic Dry Valley. Polar Biol 34: 307311.
  • Cowan DA, Sohm JA, Makhalanyane TP, Capone DG, Green TGA, Cary SC, & Tuffin IM (2011) Hypolithic communities: important nitrogen sources in Antarctic desert soils. Environ Microbiol Reports 3: 581586.
  • Culman SW, Bukowski R, Gauch HG, Cadillo-Quiroz H & Buckley DH (2009) T-REX: software for the processing and analysis of T-RFLP data. BMC Bioinformatics 10: 171.
  • De la Torre JR, Goebel BM, Friedmann EI & Pace NR (2003) Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol 69: 38583867.
  • Elberling B, Gregorich EG, Hopkins DW, Sparrow AD, Novis P & Greenfield LG (2006) Distribution and dynamics of soil organic matter in an Antarctic Dry Valley. Soil Biol Biochem 38: 30953106.
  • Fierer N & Jackson RB (2006) The diversity and biogeography of soil bacterial communities. P Natl Acad Sci USA 103: 626631.
  • Fountain AG, Nylen TH, Monaghan A, Basagic HJ & Bromwich D (2009) Snow in the McMurdo Dry Valleys, Antarctica. Int J Climatol 30: 633642.
  • Friedmann EI (1982) Endolithic microorganisms in the Antarctic cold desert. Science 215: 10451053.
  • Friedmann EI (1993) Antarctic Microbiology. Wiley-Liss, New York.
  • Friedmann EI, Druk AY & McKay CP (1994) Limits of life and microbial extinction in the Antarctic desert. Antarct J US 29: 176179.
  • Gilichinsky DA, Wagener S & Vishnivetskaya TA (1995) Permafrost microbiology. Permafrost Periglac 6: 281291.
  • Gilichinsky DA, Wilson GS, Friedmann EI et al. (2007) Microbial populations in Antarctic Permafrost: biodiversity, state, age, and implication for Astrobiology. Astrobiology 7: 275311.
  • Gonzalez JM, Zimmermann J & Saiz-Jimenez C (2005) Evaluating putative chimeric sequences from PCR amplified products and other cross-over events. Bioinformatics 21: 333337.
  • Guglielmin M, Ellis Evans CJ & Cannone N (2008) Active layer thermal regime under different vegetation conditions in permafrost areas. A case study at Signy Island (Maritime Antarctica). Geoderma 144: 7385.
  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 9598.
  • Hansen MC, Tolker-Nielsen T, Givskov M & Molin S (1998) Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region. FEMS Microbiol Ecol 26: 141149.
  • Hansom JD & Gordon JE (1998) Antarctic Environments and Resources. Addison-Wesley Longman, New York. p. 402.
  • Hopkins DW, Sparrow AD, Elberling B, Gregorich EG, Novis PM, Greenfield LG & Tilston EL (2006a) Carbon, nitrogen and temperature controls on microbial activity in soils from an Antarctic dry valley. Soil Biol Biochem 38: 31303140.
  • Hopkins DW, Sparrow AD, Novis PM, Gregorich EG, Elberling B & Greenfield LG (2006b) Controls on the distribution of productivity and organic resources in Antarctic Dry Valley soils. Proc Biol Sci 273: 26872695.
  • Horowitz NH, Cameron RE & Hubbard JS (1972) Microbiology of the Dry Valleys of Antarctica. Science 176: 242245.
  • Johnson SS, Hebsgaard MB, Christensen TR et al. (2007) Ancient bacteria show evidence of DNA repair. P Natl Acad Sci USA 104: 1440114405.
  • Jungblut AD, Hawes I, Mountfort D, Hitzfeld B, Dietrich DR, Burns BP & Neilan BA (2005) Diversity within cyano-bacterial mat communities in variable salinity melt-water ponds of McMurdo Ice Shelf, Antarctica. Environ Microbiol 7: 519529.
  • Kastovska K, Elster J, Stibal M & Santruckova H (2005) Microbial assemblages in soil microbial succession after glacial retreat in Svalbard (high arctic). Microbial Ecol 50: 396407.
  • Kemp PF & Aller JY (2004) Estimating prokaryotic diversity: when are 16S rDNA libraries large enough? Limnol Oceanogr Methods 2: 114125.
  • Kennedy AD (1993) Water as a limiting factor in the Antarctic terrestrial environment: a biogeographical synthesis. Arct Alp Res 25: 308315.
  • Kent AD, Smith DJ, Benson BJ & Triplett EW (2003) A web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities. Appl Environ Microbiol 69: 67686776.
  • Keys JR (1980) Salts and their distribution in the McMurdo region, Antarctica. PhD Thesis, Victoria University of Wellington, Wellington, New Zealand.
  • Khan N (2008) Hypolithic Communities in the Miers Valley, Eastern Antarctica. PhD Thesis, University of the Western Cape, Western Cape, South Africa.
  • Khan N, Tuffin M, Stafford W, Cary C, Lacap DC, Pointing SB & Cowan D (2011) Hypolithic microbial communities of quartz rocks from Miers Valley, McMurdo Dry Valleys, Antarctica. Polar Biol 34: 16571668.
  • Legget RF, Dickens HB & Brown RJE (1961) Permafrost investigations in Canada. Geology of the Arctic, Vol. 2 (Raasch GO, ed), pp. 956969. University of Toronto Press, Toronto.
  • Männistö MK, Tiirola M & Häggblom MM (2007) Microbial communities in Arctic fields of Finnish Lapland are stable but highly pH dependent. FEMS Microbiol Ecol 59: 452465.
  • McKay CP, Friedmann EI, Gómez-Silva B, Cáceres-Villanueva L, Andersen DT & Landheim R (2003) Temperature and moisture conditions for life in the extreme arid region of the Atacama Desert: four years of observations including the El Niño of 1997-1998. Astrobiology 3: 393406.
  • Meyer M, Huang GH, Morris G & Friedmann EI (1988) The effect of low temperatures on Antarctic endolithic green algae. Polarforschung 58: 113119.
  • Moorhead DL, Doran PT, Fountain AG, Lyons WB, McKnight DM, Priscu JC, Virginia RA & Wall DH (1999) Ecological legacies: impacts on ecosystems of the McMurdo Dry Valleys. Bioscience 49: 10091019.
  • Moorhead DL, Barrett JE, Virginia RA, Wall DH & Porazinska D (2003) Organic matter and soil biota of upland wetlands in Taylor Valley, Antarctica. Polar Biol 26: 567576.
  • Muyzer G, de Waal EC & Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695700.
  • Newsham KK, Pearce DA & Bridge PD (2010) Minimal influence of water and nutrient content on the bacterial community composition of a maritime Antarctic soil. Microbiol Res 165: 523530.
  • Niederberger TD, McDonald IR, Hacker AL, Soo RM, Barrett JE, Wall DH & Cary SC (2008) Microbial community composition in soils of Northern Victoria Land, Antarctica. Environ Microbiol 10: 17131724.
  • Nienow J & Friedmann EI (1993) Terrestrial lithophytic (rock) communities. Antarctic Microbiology (Friedmann EI, ed), pp. 343412. Wiley-Liss, New York.
  • Noy-Meir I (1973) Desert ecosystems: environment and producers. Annu Rev Ecol System 4: 2551.
  • Parker BC, Simmons GM, Wharton RA, Seaburg KG & Love FG (1982) Removal of organic and inorganic matter from Antarctic lakes by aerial escape of bluegreen algal mats. J Phycol 18: 7278.
  • Parsons AN, Barrett JE, Wall DH & Virginia RA (2004) Soil carbon dioxide flux in Antarctic dry valley ecosystems. Ecosystems 7: 286295.
  • Pointing SB, Warren-Rhodes KA, Lacap DC, Rhodes KL & McKay CP (2007) Hypolithic community shifts occur as a result of liquid water availability along environmental gradients in China's hot and cold hyperarid deserts. Environ Microbiol 9: 414424.
  • Pointing SB, Chan Y, Lacap DC, Lau MCY, Jurgens JA & Farrell R (2009) Highly specialized microbial diversity in hyper-arid polar desert. P Natl Acad Sci USA 106: 1996419969.
  • Ponder M, Vishnivetskaya T, McGrath J & Tiedje J (2004) Life in the frozen state. Microbial life in permafrost: extended times in extreme conditions. (Fuller J, Lane N & Benson E, eds), pp. 151170. CRC Press, Boca Raton, Florida.
  • Potts M (1994) Desiccation tolerance of prokaryotes. Microbiol Rev 58: 755805.
  • Reysenbach AL & Pace NR (1995) Reliable amplification of hyperthermophilic archaeal 16S rRNA genes by the polymerase chain reaction. Archaea: A Laboratory Manual - Thermophiles (Robb FT & Place AR, eds), pp. 101107. Cold Spring Harbour Laboratory Press, New York.
  • Rieger S (1974) Arctic soils. Arctic and Alpine Environments, Ch.13A (Ives JD & RJ Barry, eds), pp. 749769. Methuen, London.
  • Rivkina EM, Friedmann EI, McKay CP & Gilichinsky DA (2000) Metabolic activity of permafrost bacteria below the freezing point. Appl Environ Microbiol 66: 32303233.
  • Sauer TJ & Logsdon SD (2002) Hydraulic and physical properties of stony soils in a small watershed. Soil Sci Soc Am J 66: 19471956.
  • Seybold CA, Balks MR & Harms DS (2010) Characterization of active layer water contents in the McMurdo Sound region, Antarctica. Antarct Sci 22: 633645.
  • Shi T, Reeves RH, Gilichinsky DA & Friedmann EI (1997) Characterization of viable bacteria from Siberian permafrost by 16S rDNA sequencing. Microbial Ecol 33: 169179.
  • Slabert E, van Heerden CJ & Jacobs K (2010) Optimisation of automated ribosomal intergenic spacer analysis for the estimation of microbial diversity in fynbos soil. S Afr J Sci 106: 5255.
  • Smith RC, Prezelin BB, Baker KS et al. (1992) Ozone depletion: ultraviolet-radiation and phytoplankton biology in Antarctic waters. Science 255: 952959.
  • Smith CJ, Danilowicz BS, Clear AK, Costello FJ & Wilson B (2005) T-Align, a web-based tool for comparison of multiple terminal restriction fragment length polymorphism profiles. FEMS Microbiol Ecol 54: 375380.
  • Smith JJ, Ah Tow L, Stafford W, Cary C & Cowan DA (2006) Bacterial diversity in three different Antarctic cold desert mineral soils. Microbial Ecol 51: 413421.
  • Soo RM, Wood SA, Grzymski JJ, McDonald IR & Cary SC (2009) Microbial biodiversity of thermophilic communities in hot mineral soils of Tramway Ridge, Mount Erebus, Antarctica. Environ Microbiol 11: 715728.
  • SSSA (1996) Methods of Soil Analysis, Part 3, Soil Science Society of America, Madison, WI.
  • Steven B, Léveillé R, Pollard W & Whyte L (2006) Microbial ecology and biodiversity in permafrost. Extremophiles 10: 259267.
  • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961599.
  • Tosi S, Onofri S, Brusoni M, Zucconi L & Vishniac H (2005) Response of Antarctic soil fungal assemblages to experimental warming and reduction of UV radiation. Polar Biol 28: 470482.
  • Vincent WF (2000) Evolutionary origins of Antarctic microbiota: invasion, selection and endemism. Antarct Sci 12: 374385.
  • Vishniac HS (1993) The microbiology of Antarctic soils. Antarctic Microbiology (Friedmann EI, ed), pp. 297341. Wiley-Liss, New York.
  • Vorobyova E, Soina V, Gorlenko M, Minkovskaya N, Zalinova N, Mamukelashvili A, Gilichinsky D, Rivkina E & Vishnivetskaya T (1997) The deep cold biosphere: facts and hypothesis. FEMS Microbiol Rev 20: 277290.
  • Warren-Rhodes K, Rhodes K, Pointing S, Ewing S, Lacap D, Gómez-Silva B, Amundson R, Friedmann E & McKay C (2006) Hypolithic Cyanobacteria, dry limit of photosynthesis, and microbial ecology in the hyperarid Atacama Desert. Microbial Ecol 52: 389398.
  • Warren-Rhodes KA, Rhodes KL, Boyle LN, Pointing SB, Chen Y, Liu S, Zhuo P & McKay CP (2007) Cyanobacterial ecology across environmental gradients and spatial scales in China's hot and cold deserts. FEMS Microbiol Ecol 61: 470482.
  • Willerslev E, Hansen AJ, Ronn R, Brand TB, Barnes I, Wiuf C, Gilichinsky D, Mitchell D & Cooper A (2004) Long-term persistence of bacterial DNA. Curr Biol 14: R9R10.
  • Wise KAJ & Gressit JL (1965) Far southern animals and plants. Nature 207: 101102.
  • Wood SA, Rueckert A, Cowan DA & Cary SC (2008) Sources of edaphic cyanobacterial diversity in the Dry Valleys of Eastern Antarctica. ISME J 2: 308320.
  • Wynn-Williams DD (1990) Ecological aspects of Antarctic microbiology. Adv Microbial Ecol 11: 71146.
  • Yergeau E, Newsham KK, Pearce DA & KowalchukGA (2007) Patterns of bacterial diversity across a range of Antarctic terrestrial habitats. Environ Microbiol 9: 26702682.
  • Yergeau E, Schoondermark-Stolk SA, Brodie EL, Déjean S, DeSantis TZ, Gonçalves O, Piceno YM, Andersen GL & Kowalchuk GA (2009) Environmental microarray analyses of Antarctic soil microbial communities. ISME J 3: 340351.
  • Zeglin L, Sinsabaugh R, Barrett J, Gooseff M & Takacs-Vesbach C (2009) Landscape distribution of microbial activity in the McMurdo Dry Valleys: linked biotic processes, hydrology, and geochemistry in a cold desert ecosystem. Ecosystems 12: 562573.