SEARCH

SEARCH BY CITATION

References

  • [1]
    Wood, P.M. (1986) In: Nitrification, Vol. 20 (Prosser, J.I., Ed.), pp. 39–62. IRL Press, Oxford.
  • [2]
    Head, I.M., Hiorns, W.D., Embley, T.M., McCarthy, A.J., Saunders, J.R. (1993) The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences. J. Gen. Microbiol. 139, 11471153.
  • [3]
    Teske, A, Alm, E, Regan, J.M., Toze, S, Rittmann, B.E., Stahl, D.A. (1994) Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. J. Bacteriol. 176, 66236630.
  • [4]
    Aakra, Å, Hessels?e, M, Bakken, L.R. (2000) Surface attachment of ammonia-oxidizing bacteria in soil. Microb. Ecol. 39, 222235.
  • [5]
    McCaig, A.E., Embley, T.M., Prosser, J.I. (1994) Molecular analysis of enrichment cultures of marine ammonia oxidisers. FEMS Microbiol. Lett. 120, 363368.
  • [6]
    Rotthauwe, J.H., Witzel, K.P., Liesack, W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol. 63, 47044712.
  • [7]
    Utåker, J.B., Nes, I.F. (1998) A qualitative evaluation of the published oligonucleotides specific for the 16S rDNA gene sequences of the ammonia-oxidizing bacteria. Syst. Appl. Microbiol. 21, 7288.
  • [8]
    Sinigalliano, C.D., Kuhn, D.N., Jones, R.D. (1995) Amplification of the amoA gene from diverse species of ammonia-oxidizing bacteria and from an indigenous bacterial population from seawater. Appl. Environ. Microbiol. 61, 27022706.
  • [9]
    Kowalchuk, G.A., Stienstra, A.W., Heilig, G.H., Stephen, J.R., Woldendorp, J.W. (2000) Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands). FEMS Microbiol. Ecol. 31, 207215.
  • [10]
    Stephen, J.R., Chang, Y.J., Macnaughton, S.J., Kowalchuk, G.A., Leung, K.T., Flemming, C.A., White, D.C. (1999) Effect of toxic metals on indigenous soil β-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria. Appl. Environ. Microbiol. 65, 95101.
  • [11]
    Purkhold, U, Pommerening-Roser, A, Juretschko, S, Schmid, M.C., Koops, H.P., Wagner, M (2000) Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl. Environ. Microbiol. 66, 53685382.
  • [12]
    Ivanova, I.A. et al (2000) A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the beta-subdivision of the class proteobacteria in contaminated groundwater. Can. J. Microbiol. 46, 10121020.
  • [13]
    Holmes, A.J., Costello, A, Lidstrom, M.E., Murrell, J.C. (1995) Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionary related. FEMS Microbiol. Lett. 132, 203208.
  • [14]
    Jiang, Q.Q., Bakken, L.R. (1999) Comparison of Nitrosospira strains isolated from terrestrial environments. FEMS Microbiol. Ecol. 30, 171186.
  • [15]
    Koops, H.-P, Böttcher, B, Möller, U.C., Pommerening-Röser, A, Stehr, G (1991) Classification of eight new species of ammonia-oxidizing bacteria: Nitrosomonas communis sp.nov., Nitrosomonas ureae sp.nov., Nitrosomonas aestuarii sp.nov., Nitrosomonas marina sp.nov., Nitrosomonas nitrosa sp.nov., Nitrosomonas eutropha sp.nov., Nitrosomonas oligotropha sp.nov. Nitrosomonas halophila sp. nov.. J. Gen. Microbiol. 137, 16891699.
  • [16]
    McTavish, H, Fuchs, J.A., Hooper, A.B. (1993) Sequence of the gene coding for ammonia monooxygenase in Nitrosomonas europaea. J. Bacteriol. 175, 24362444.
  • [17]
    Utåker, J.B., Bakken, L, Jiang, Q.Q., Nes, I.F. (1995) Phylogenetic analysis of seven new isolates of ammonia-oxidizing bacteria based on 16S rRNA gene sequences. Syst. Appl. Microbiol. 18, 549559.
  • [18]
    Felsenstein, J. (1993) PHYLIP (Phylogeny Inference Package) version 3.5. Distributed by the author. Department of Genetics, University of Washington, Seattle, WA.
  • [19]
    Page, R.D.M. (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12, 357358.
  • [20]
    Bruns, M.A., Fries, M.R., Tiedje, J.M., Paul, E.A. (1998) Functional gene hybridization patterns of terrestrial ammonia-oxidizing bacteria. Microb. Ecol. 36, 293302.
  • [21]
    Norton, J.M., Low, J.M., Klotz, M.G. (1996) The gene encoding ammonia monooxygenase subunit A exists in nearly three identical copies in Nitrosospira sp. NpAV. FEMS Microbiol. Lett. 139, 181188.
  • [22]
    Aakra, Å, Utåker, J.B., Nes, I.F. (1999) RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia oxidizing bacteria: a phylogenetic approach. Int. J. Syst. Bacteriol. 49, 123130.
  • [23]
    Aakra, Å., Utåker, J.B. Pommering-Röser, A., Koops, H.-P. and Nes, I.F. (2001) Detailed phylogeny of ammonia-oxidizing bacteria determined by rDNA sequences and DNA homology values. Int. J. Syst. Evol. Microbiol., submitted.
  • [24]
    Koops, H.-P, Harms, H (1985) Deoxyribonucleic acid homologies among 96 strains of ammonia-oxidizing bacteria. Arch. Microbiol. 141, 214218.
  • [25]
    Jones, R.D., Morita, R.Y. (1985) Low-temperature growth and whole-cell kinetics of a marine ammonium oxidizer. Mar. Ecol. Prog. Ser. 21, 239243.
  • [26]
    Aakra, Å, Utåker, J.B., Nes, I.F., Bakken, L.R. (1999) An evaluated improvement of the extinction dilution method for isolation of ammonia oxidizing bacteria. J. Microbiol. Methods 39, 2331.
  • [27]
    McCarty, G.W., Bremner, J.M., Schmidt, E.L. (1991) Effects of phenolic acids on ammonia oxidation by terrestrial autotrophic nitrifying microorganisms. FEMS Microb. Ecol. 85, 345450.
  • [28]
    Krümmel, A, Harms, H (1982) Effect of organic matter on growth and cell yield of ammonia-oxidizing bacteria. Arch. Microbiol. 133, 5054.