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References

  • [1]
    Fuerst, J.A (1995) The planctomycetes – emerging models for microbial ecology, evolution and cell biology. Microbiology 141, 14931506.
  • [2]
    Lindsay, M.R, Webb, R.I, Fuerst, J.A (1997) Pirellulosomes: a new type of membrane-bounded cell compartment in planctomycete bacteria of the genus Pirellula. Microbiology 143, 739748.
  • [3]
    Schlesner, H., Rendsmann, C., Tindall, B.J., Gade, D., Rabus, R., Pfeiffer, S., Hirsch, P. (2004). Taxonomic heterogeneity within the Planctomycetales as derived by DNA–DNA hybridization, description of Rhodopirellula baltica gen. nov., sp. nov., transfer of Pirellula marina to the genus Blastopirellula gen. nov. as Blastopirellula marina comb. nov., and emended description of the genus Pirellula. Int. J. Syst. Envol. Microbiol., in press. Available from http://10.1099/ijs.0.63113-0
  • [4]
    Fuerst, J.A, Webb, R.I (1991) Membrane-bounded nucleoid in the eubacterium Gemmata obscuriglobus. Proc. Natl. Acad. Sci. USA 88, 81848188.
  • [5]
    Lindsay, M.R, Webb, R.I, Strous, M, Jetten, M.S, Butler, M.K, Forde, R.J, Fuerst, J.A (2001) Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell. Archives of Microbiology 175, 413429.
  • [6]
    Brochier, C, Philippe, H (2002) Phylogeny: a non-hyperthermophilic ancestor for bacteria. Nature 417, 244.
  • [7]
    Glockner, F.O, Kube, M, Bauer, M, Teeling, H, Lombardot, T, Ludwig, W, Gade, D, Beck, A, Borzym, K, Heitmann, K, Rabus, R, Schlesner, H, Amann, R, Reinhardt, R (2003) Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc. Natl. Acad. Sci. USA 100, 82988303.
  • [8]
    Bateman, A, Coin, L, Durbin, R, Finn, R.D, Hollich, V, Griffiths-Jones, S, Khanna, A, Marshall, M, Moxon, S, Sonnhammer, E.L, Studholme, D.J, Yeats, C, Eddy, S.R (2004) The Pfam protein families database. Nucleic Acids Res. 32, D138D141.
  • [9]
    Altschul, S.F, Gish, W, Miller, W, Myers, E.W, Lipman, D.J (1990) Basic local alignment search tool. J. Mol. Biol. 215, 403410.
  • [10]
    Katoh, K, Misawa, K, Kuma, K, Miyata, T (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30, 30593066.
  • [11]
    Eddy, S.R (1998) Profile hidden Markov models. Bioinformatics 14, 755763.
  • [12]
    Apweiler, R, Bairoch, A, Wu, C.H, Barker, W.C, Boeckmann, B, Ferro, S, Gasteiger, E, Huang, H, Lopez, R, Magrane, M, Martin, M.J, Natale, D.A, O'Donovan, C, Redaschi, N, Yeh, L.S (2004) UniProt: the Universal Protein knowledgebase. Nucleic Acids Res. 32, D115D119.
  • [13]
    Hulo, N, Sigrist, C.J, Le Saux, V, Langendijk-Genevaux, P.S, Bordoli, L, Gattiker, A, De Castro, E, Bucher, P, Bairoch, A (2004) Recent improvements to the PROSITE database. Nucleic Acids Res. 32, D134D137.
  • [14]
    Tam, R Saier, M.H Jr. (1993) Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria. Microbiol. Rev. 57, 320346.
  • [15]
    Berks, B.C, Palmer, T, Sargent, F (2003) The Tat protein translocation pathway and its role in microbial physiology. Adv. Microb. Physiol. 47, 187254.
  • [16]
    Bayer, E.A, Shimon, L.J, Shoham, Y, Lamed, R (1998) Cellulosomes – structure and ultrastructure. J. Struct. Biol. 124, 221234.
  • [17]
    Schwarz, E.M, Benzer, S (1997) Calx, a Na–Ca exchanger gene of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 94, 1024910254.
  • [18]
    Wheelock, M.J, Johnson, K.R (2003) Cadherins as modulators of cellular phenotype. Annu. Rev. Cell. Dev. Biol. 19, 207235.
  • [19]
    Lawler, J, Hynes, R.O (1986) The structure of human thrombospondin, an adhesive glycoprotein with multiple calcium-binding sites and homologies with several different proteins. J. Cell. Biol. 103, 16351648.
  • [20]
    Schlesner, H (1986) Pirella marina sp.nov., a budding, peptidoglycan-less bacterium from brackish water. Syst. Appl. Microbiol. 8, 177180.
  • [21]
    Schlesner, H (1994) The development of media suitable for the microorganisms morphologically resembling Planctomyces spp, Pirellula spp, and other Planctomycetales from various aquatic habitats using dilute media. Syst. Appl. Microbiol. 17, 135145.
  • [22]
    Staley, J.T (1973) Budding bacteria of the Pasteuria-Blastobacter group. Can. J. Microbiol. 19, 609614.
  • [23]
    Tekniepe, B.L, Schmidt, J.M, Starr, M.P (1981) Life cycle of a budding and appendaged bacterium belonging to morphotype IV of the Blastocaulis-Planctomyces group. Curr. Microbiol. 5, 16.
  • [24]
    Butler, M.K, Wang, J, Webb, R.I, Fuerst, J.A (2002) Molecular and ultrastructural confirmation of classification of ATCC 35122 as a strain of Pirellula staleyi. Int. J. Syst. Evol. Microbiol. 52, 16631667.
  • [25]
    Schlesner, H, Hirsch, P (1984) Assignment of ATCC27377 to Pirella gen. Nov. as Pirella staleyi comb. Nov. Int. J. Syst. Bacteriol 34, 492495.
  • [26]
    Baumgartner, S, Hofmann, K, Chiquet-Ehrismann, R, Bucher, P (1998) The discoidin domain family revisited: new members from prokaryotes and a homology-based fold prediction. Protein Sci. 7, 16261631.
  • [27]
    Helmann, J.D (2002) The extracytoplasmic function (ECF) sigma factors. Adv. Microb. Physiol. 46, 47110.
  • [28]
    Teeling, H, Lombardot, T, Bauer, M, Ludwig, W, Glöckner, F.O (2004) Evaluation of the phylogenetic position of the planctomycete ‘Rhodopirellula baltica’ SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees. IJSEM 54, 791801.
  • [29]
    Ward, N.L, Rainey, F.A, Hedlund, B.P, Staley, J.T, Ludwig, W, Stackebrandt, E (2000) Comparative phylogenetic analyses of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. Int.J. Syst. Evol. Microbiol. 50, 19651972.
  • [30]
    Letunic, I, Copley, R.R, Schmidt, S, Ciccarelli, F.D, Doerks, T, Schultz, J, Ponting, C.P, Bork, P (2004) SMART 4.0: towards genomic data integration. Nucleic Acids Res. 32, D142D144.
  • [31]
    Nielsen, H, Engelbrecht, J, Brunak, S, von Heijne, G (1997) Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10, 16.
  • [32]
    Clamp, M, Cuff, J, Searle, S.M, Barton, G.J (2004) The Jalview Java alignment editor. Bioinformatics 20, 426427.