SEARCH

SEARCH BY CITATION

References

  • Amikam D & Benziman M (1989) Cyclic diguanylic acid and cellulose synthesis in Agrobacterium tumefaciens. J Bacteriol 171: 66496655.
  • Andersen JB, Sternberg C, Poulsen LK, Bjorn SP, Givskov M & Molin S (1998) New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria. Appl Environ Microbiol 64: 22402246.
  • Ausmees N, Mayer R, Weinhouse H, Volman G, Amikam D, Benziman M & Lindberg M (2001) Genetic data indicate that proteins containing the GGDEF domain possess diguanylate cyclase activity. FEMS Microbiol Lett 204: 163167.
  • Bao Y, Lies DP, Fu H & Roberts GP (1991) An improved Tn7-based system for the single-copy insertion of cloned genes into chromosomes of gram-negative bacteria. Gene 109: 167168.
  • Bobrov AG, Kirillina O & Perry RD (2005) The phosphodiesterase activity of the HmsP EAL domain is required for negative regulation of biofilm formation in Yersinia pestis. FEMS Microbiol Lett 247: 123130.
  • Boles BR & McCarter LL (2002) Vibrio parahaemolyticus scrABC, a novel operon affecting swarming and capsular polysaccharide regulation. J Bacteriol 184: 59465954.
  • Chan C, Paul R, Samoray D, Amiot NC, Giese B, Jenal U & Schirmer T (2004) Structural basis of activity and allosteric control of diguanylate cyclase. Proc Natl Acad Sci 101: 1708417089.
  • Christen M, Christen B, Folcher M, Schauerte A & Jenal U (2005) Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP. J Biol Chem 280: 3082930837.
  • Costerton JW, Lewandowski Z, Caldwell DE, Korber DR & Lappin-Scott HM (1995) Microbial biofilms. Annu Rev Microbiol 49: 711745.
  • Costerton JW, Stewart PS & Greenberg EP (1999) Bacterial biofilms: a common cause of persistent infections. Science 284: 13181322.
  • D'Argenio DA, Calfee MW, Rainey PB & Pesci EC (2002) Autolysis and autoaggregation in Pseudomonas aeruginosa colony morphology mutants. J Bacteriol 184: 64816489.
  • Da Re S & Ghigo JM (2006) A CsgD-independent pathway for cellulose production and biofilm formation in Escherichia coli. J Bacteriol 188: 30733087.
  • De Lorenzo V, Herrero M, Jakubzik U & Timmis KN (1990) Mini-Tn5 transposon derivatives for insertion mutagenesis, promoter probing, and chromosomal insertion of cloned DNA in gram-negative eubacteria. J Bacteriol 172: 65686572.
  • Ditta G, Schmidhauser T, Yakobson E, Lu P, Liang XW, Finlay DR, Guiney D & Helinski DR (1985) Plasmids related to the broad host range vector, pRK290, useful for gene cloning and for monitoring gene expression. Plasmid 13: 149153.
  • Friedman L & Kolter R (2004) Two genetic loci produce distinct carbohydrate-rich structural components of the Pseudomonas aeruginosa biofilm matrix. J Bacteriol 186: 44574465.
  • Galperin MY (2005) A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts. BMC Microbiol 5: 35.
  • Garcia B, Latasa C, Solano C, Garcia-del Portillo F, Gamazo C & Lasa I (2004) Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation. Mol Microbiol 54: 264277.
  • Gjermansen M, Ragas P, Sternberg C, Molin S & Tolker-Nielsen T (2005) Characterization of starvation-induced dispersion in Pseudomonas putida biofilms. Environ Microbiol 7: 894906.
  • Hickman JW, Tifrea DF & Harwood CS (2005) A chemosensory system that regulates biofilm formation through modulation of cyclic diguanylate levels. Proc Natl Acad Sci USA 102: 1442214427.
  • Kessler B, De Lorenzo V & Timmis KN (1992) A general system to integrate lacZ fusions into the chromosomes of gram negative eubacteria: regulation of Pm promoter in the TOL plasmid studied with all controlling elements in monocopy. Mol Gen Genet 233: 293301.
  • Kirillina O, Fetherston JD, Bobrov AG, Abney J & Perry RD (2004) HmsP, a putative phosphodiesterase, and HmsT, a putative diguanylate cyclase, control Hms-dependent biofilm formation in Yersinia pestis. Mol Microbiol 54: 7588.
  • Kiyohara H, Torigoe S, Kaida N, Asaki T, Iida T, Hayashi H & Takizawa N (1994) Cloning and characterization of a chromosomal gene cluster, pah, that encodes the upper pathway for phenanthrene and naphthalene utilization by Pseudomonas putida OUS82. J Bacteriol 176: 24392443.
  • Koch B, Jensen LE & Nybroe O (2001) A panel of Tn7-based vectors for insertion of the gfp marker gene or for delivery of cloned DNA into Gram-negative bacteria at a neutral chromosomal site. J Microbiol Methods 45: 187195.
  • Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM & Peterson KM (1995) Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166: 175176.
  • Lambertsen L, Sternberg C & Molin S (2004) Mini-Tn7 transposons for site-specific tagging of bacteria with fluorescent proteins. Environ Microbiol 6: 726732.
  • Matz C & Kjelleberg S (2005) Off the hook – how bacteria survive protozoan grazing. Trends Microbiol 13: 302307.
  • Mendez-Ortiz MM, Hyodo M, Hayakawa Y & Membrillo-Hernandez J (2006) Genome-wide transcriptional profile of Escherichia coli in response to high levels of the second messenger 3′,5′-cyclic diguanylic acid. J Biol Chem 281: 80908099.
  • O'Toole GA & Kolter R (1998) Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol Microbiol 30: 295304.
  • Paul R, Weiser S, Amiot NC, Chan C, Schirmer T, Giese B & Jenal U (2004) Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain. Genes Dev 18: 715727.
  • Romling U (2005) Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae. Cell Mol Life Sci 62: 12341246.
  • Ross P, Weinhouse H, Aloni Y et al. (1987) Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature 325: 279281.
  • Ryjenkov DA, Tarutina M, Moskvin OV & Gomelsky M (2005) Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain. J Bacteriol 187: 17921798.
  • Schmidt AJ, Ryjenkov DA & Gomelsky M (2005) The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: enzymatically active and inactive EAL domains. J Bacteriol 187: 47744781.
  • Simm R, Morr M, Kader A, Nimtz M & Romling U (2004) GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility. Mol Microbiol 53: 11231234.
  • Simm R, Fetherston JD, Kader A, Romling U & Perry RD (2005) Phenotypic convergence mediated by GGDEF-domain-containing proteins. J Bacteriol 187: 68166823.
  • Spiers AJ & Rainey PB (2005) The Pseudomonas fluorescens SBW25 wrinkly spreader biofilm requires attachment factor, cellulose fibre and LPS interactions to maintain strength and integrity. Microbiology 151: 28292839.
  • Spiers AJ, Bohannon J, Gehrig SM & Rainey PB (2003) Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose. Mol Microbiol 50: 1527.
  • Sternberg C, Christensen BB, Johansen T, Toftgaard Nielsen A, Andersen JB, Givskov M & Molin S (1999) Distribution of bacterial growth activity in flow-chamber biofilms. Appl Environ Microbiol 65: 41084117.
  • Szomolay B, Klapper I, Dockery J & Stewart PS (2005) Adaptive responses to antimicrobial agents in biofilms. Environ Microbiol 7: 11861191.
  • Tal R, Wong HC, Calhoon R et al. (1998) Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: genetic organization and occurrence of conserved domains in isoenzymes. J Bacteriol 180: 44164425.
  • Tamayo R, Tischler AD & Camilli A (2005) The EAL domain protein VieA is a cyclic diguanylate phosphodiesterase. J Biol Chem 280: 3332433330.
  • Thormann KM, Duttler S, Saville RM, Hyodo M, Shukla S, Hayakawa Y & Spormann AM (2006) Control of formation and cellular detachment from Shewanella oneidensis MR-1 biofilms by cyclic di-GMP. J Bacteriol 188: 26812691.
  • Tischler AD & Camilli A (2004) Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation. Mol Microbiol 53: 857869.
  • Tolker-Nielsen T, Brinch UC, Ragas PC, Andersen JB, Jacobsen CS & Molin S (2000) Development and dynamics of Pseudomonas sp. biofilms. J Bacteriol 182: 64826489.
  • Tyagi R, Lai R & Duggleby RG (2004) A new approach to ‘megaprimer’ polymerase chain reaction mutagenesis without an intermediate gel purification step. BMC Biotechnol 4: 2.
  • Van De Mortel M & Halverson LJ (2004) Cell envelope components contributing to biofilm growth and survival of Pseudomonas putida in low-water-content habitats. Mol Microbiol 52: 735750.
  • Wolfaardt GM, Lawrence JR, Robarts RD, Caldwell SJ & Caldwell DE (1994) Multicellular organization in a degradative biofilm community. Appl Environ Microbiol 60: 434446.