SEARCH

SEARCH BY CITATION

References

  • Aakra A, Utåker JB & Nes IF (2001) Comparative phylogeny of the ammonia monooxygenase subunit A and 16S rRNA genes of ammonia-oxidizing bacteria. FEMS Microbiol Lett 205: 237242.
  • Avrahami S, Conrad R & Braker G (2002) Effect of soil ammonium concentration on N2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl Environ Microbiol 68: 56855692.
  • Beaumont HJ, Hommes NG, Sayavedra-Soto LA, Arp DJ, Arciero DM, Hooper AB, Westerhoff HV & Van Spanning RJM (2002) Nitrite reductase of Nitrosomonas europaea is not essential for production of gaseous nitrogen oxides and confers tolerance to nitrite. J Bacteriol 184: 25572560.
  • Braker G & Tiedje JM (2003) Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Appl Environ Microbiol 69: 34763483.
  • Braker G, Fesefeldt A & Witzel K-P (1998) Development of PCR primer system for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl Environ Microbiol 64: 37693775.
  • Briones AM, Okabe S, Umemiya Y, Ramsing N-B, Reichardt W & Okuyama H (2002) Influence of different cultivars on populations of ammonia-oxidizing bacteria in the root environment of rice. Appl Environ Microbiol 68: 30673075.
  • Casciotti KL & Ward BB (2001) Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria. Appl Environ Microbiol 67: 22132221.
  • Casciotti KL & Ward BB (2005) Phylogenetic analysis of nitric oxide reductase gene homologues from aerobic ammonia-oxidizing bacteria. FEMS Microbiol Ecol 52: 197205.
  • Cho CM-H, Yan T, Liu X, Wu L, Zhou J & Stein LY (2006) Transcriptome of Nitrosomonas europaea mutant with a disrupted nitrite reductase gene (nirK). Appl Environ Microbiol 72: 44504454.
  • Colliver BB & Stephenson T (2000) Production of nitrogen oxide and dinitrogen oxide by autotrophic nitrifiers. Biotechnol Adv 18: 219232.
  • Dickinson RE & Cicerone RJ (1986) Future global warming from atmospheric trace gases. Nature 319: 109115.
  • Dundee L & Hopkins DW (2001) Different sensitivities to oxygen of nitrous oxide production by Nitrosomonas europaea and Nitrosolobus multiformis. Soil Biol Biochem 33: 15631565.
  • Hallin S & Lindgren P-E (1999) PCR detection of genes encoding nitrite reductase in denitrifying bacteria. Appl Environ Microbiol 65: 16521657.
  • Jiang Q-Q & Bakken LR (1999) Nitrous oxide production and methane oxidation by different ammonia-oxidizing bacteria. Appl Environ Microbiol 65: 26792684.
  • Keen GA & Prosser JI (1987) Steady state and transient growth of autotrophic nitrifying bacteria. Arch Microbiol 147: 7379.
  • Kester RA, De Boer W & Laanbroek HJ (1997) Production of NO and N2O by pure cultures of nitrifying and denitrifying bacteria during changes in aeration. Appl Environ Microbiol 63: 38723877.
  • Kowalchuk GA, Stephen RJ, De Boer W, Prosser JI, Embley TM & Woldendorp JW (1997) Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class proteobacteria in costal sand dunes by denaturing gradient gel electrophoresis and sequencing of 16S ribosomal DNA fragments. Appl Environ Microbiol 63: 14891497.
  • Okano Y, Hristova KR, Leutenegger CM, Jackson LE, Denison RF, Gebreyesus B, Lebauer D & Scow KM (2004) Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 70: 10081016.
  • Oved T, Shaviv A, Goldrath T, Mandelbaum RT & Minz D (2001) Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 67: 34263433.
  • Philippot L (2002) Denitrifying genes in bacterial and archaeal genomes. Biochim Biophys Acta 1577: 355378.
  • Powell SJ & Prosser JI (1986) Inhibition of ammonium oxidation by nitrapyrin in soil and liquid culture. Appl Environ Microbiol 52: 782787.
  • Prosser JI (1989) Autotrophic nitrification in bacteria. Adv Micro Physiol 30: 125181.
  • Purkhold U, Wagner M, Timmermann G, Pommerening-Röser A & Koops HP (2003) 16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidising isolates: extension of dataset and proposal of a new lineage within the nitrosomonads. Int J System Evol Microbiol 53: 14851494.
  • Schmidt I, Van Spanning RJM & Jetten MSM (2004) Denitrification and ammonia oxidation by Nitrosomonas europaea wild type and NirK- and NorB-deficient mutants. Microbiology 150: 41074114.
  • Shaw LJ, Nicol GW, Smith Z, Fear J, Prosser JI & Baggs EM (2006) Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway. Environ Microbiol 8: 214222.
  • Song B & Ward BB (2003) Nitrite reductase genes in halobenzoate degrading denitrifying bacteria. FEMS Microbiol Ecol 43: 349357.
  • Stein LY & Arp DJ (1998) Loss of ammonia monooxygenase activity in Nitrosomonas europaea upon exposure to nitrite. Appl Environ Microbiol 64: 40984102.
  • Stephen JR, McCaig AE, Smith Z, Prosser JI & Embley TM (1996) Molecular diversity of soil and marine 16S rRNA gene sequences related to β-subgroup ammonia-oxidizing bacteria. Appl Environ Microbiol 62: 41474154.
  • Stephen JR, Kowalchuk GA, Bruns MA, McCaig AE, Phillips CJ, Embley TM & Prosser JI (1998) Analysis of β–subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl Environ Microbiol 64: 29582965.
  • Taylor AE & Bottomley PJ (2006) Nitrite production by Nitrosomonas europaea and Nitrosospira sp. AV in soils as different solution concentrations of ammonium. Soil Biol Biochem 38: 828836.
  • Thröback IN, Enwall K, Jarvis A & Hallin S (2004) Reassessing PCR primers targeting nirS, nirK and nosZ genes from community surveys of denitrifying bacteria with DGGE. FEMS Microbiol Ecol 49: 401417.
  • Webster EA & Hopkins DW (1996) Contribution from different microbial processes to N2O emissions from soil under different moisture regimes. Biol Fert Soil 22: 331335.
  • Wrage N, Velthof GL, Van Beusichem ML & Oenema O (2001) Role of nitrifier denitrification in the production of nitrous oxide. Soil Biol Biochem 33: 17231732.
  • Wrage N, Van Groeningen JW, Oenema O & Baggs EM (2005) Distinguishing between soil sources of N2O using a new 15N- and 18O-enrichment method. Rapid Comm Mass Spec 19: 32983306.
  • Zumft WG (1997) Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61: 533616.