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References

  • Adolfsson O, Meydani SN & Russell RM (2004) Yogurt and gut function. Am J Clin Nutr 80: 245256.
  • Ahrne S, Nobaek S, Jeppsson B, Adlerberth I, Wold AE & Molin G (1998) The normal Lactobacillus flora of healthy human rectal and oral mucosa. J Appl Microbiol 85: 8894.
  • Altermann E, Russell WM, Azcarate-Peril MA et al. (2005) Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc Natl Acad Sci USA 102: 39063912.
  • Archibald FS & Fridovich I (1981) Manganese, superoxide dismutase, and oxygen tolerance in some lactic acid bacteria. J Bacteriol 146: 928936.
  • Azcarate-Peril MA, McAuliffe O, Altermann E, Lick S, Russell WM & Klaenhammer TR (2005) Microarray analysis of a two-component regulatory system involved in acid resistance and proteolytic activity in Lactobacillus acidophilus. Appl Environ Microbiol 71: 57945804.
  • Barrangou R, Azcarate-Peril MA, Duong T, Conners SB, Kelly RM & Klaenhammer TR (2006) Global analysis of carbohydrate utilization by Lactobacillus acidophilus using cDNA microarrays. Proc Natl Acad Sci USA 103: 38163821.
  • Bergonzelli GE, Granato D, Pridmore RD, Marvin-Guy LF, Donnicola D & Corthesy-Theulaz IE (2006) GroEL of Lactobacillus johnsonii La1 (NCC 533) is cell surface associated: potential role in interactions with the host and the gastric pathogen Helicobacter pylori. Infect Immun 74: 425434.
  • Boekhorst J, Siezen RJ, Zwahlen MC, Vilanova D, Pridmore RD, Mercenier A, Kleerebezem M, De Vos WM, Brussow H & Desiere F (2004) The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content. Microbiology 150: 36013611.
  • Buck BL, Altermann E, Svingerud T & Klaenhammer TR (2005) Functional analysis of putative adhesion factors in Lactobacillus acidophilus NCFM. Appl Environ Microbiol 71: 83448351.
  • Cai Y, Benno Y, Ogawa M & Kumai S (1999) Effect of applying lactic acid bacteria isolated from forage crops on fermentation characteristics and aerobic deterioration of silage. J Dairy Sci 82: 520526.
  • Canchaya C, Claesson MJ, Fitzgerald GF, Van Sinderen D & O'Toole PW (2006) Diversity of the genus Lactobacillus revealed by comparative genomics of five species. Microbiology 152: 31853196.
  • Chaillou S, Champomier-Verges MC, Cornet M et al. (2005) The complete genome sequence of the meat-borne lactic acid bacterium Lactobacillus sakei 23K. Nat Biotechnol 23: 15271533.
  • Champomier-Verges MC, Chaillou S, Cornet M & Zagorec M (2001) Lactobacillus sakei: recent developments and future prospects. Res Microbiol 152: 839848.
  • Claesson MJ, Li Y, Leahy S et al. (2006) Multireplicon genome architecture of Lactobacillus salivarius. Proc Natl Acad Sci USA 103: 67186723.
  • Dellaglio F & Felis GE (2005) Taxonomy of Lactobacilli and Bifidobacteria. Probiotics and Prebiotics: Scientific Aspects (TannockGW, ed), pp. 2549. Caister Academic Press, Norfolk, UK.
  • Dunne C, Murphy L, Flynn S et al. (1999) Probiotics: from myth to reality demonstration of functionality in animal models of disease and in human clinical trials. Antonie Van Leeuwenhoek 76: 279292.
  • Duong T, Barrangou R, Russell WM & Klaenhammer TR (2006) Characterization of the tre locus and analysis of trehalose cryoprotection in Lactobacillus acidophilus NCFM. Appl Environ Microbiol 72: 12181225.
  • Flynn S, Van Sinderen D, Thornton GM, Holo H, Nes IF & Collins JK (2002) Characterization of the genetic locus responsible for the production of ABP-118, a novel bacteriocin produced by the probiotic bacterium Lactobacillus salivarius subsp. salivarius UCC118. Microbiology 148: 973984.
  • Granato D, Bergonzelli GE, Pridmore RD, Marvin L, Rouvet M & Corthesy-Theulaz IE (2004) Cell surface-associated elongation factor Tu mediates the attachment of Lactobacillus johnsonii NCC533 (La1) to human intestinal cells and mucins. Infect Immun 72: 21602169.
  • Hammes WP & Hertel C (2003) The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, Springer-Verlag, New York, NY.
  • Hammes WP & Vogel RF (1995) The genus Lactobacillus. The Genera of Lactic Acid Bacteria, Vol. 2. (WoodBJB & HolzapfelWH, eds), pp. 1954. Blackie Academic & Professional, Glasgow, UK.
  • Heilig HG, Zoetendal EG, Vaughan EE, Marteau P, Akkermans AD & De Vos WM (2002) Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl Environ Microbiol 68: 114123.
  • Hols P, Hancy F, Fontaine L et al. (2005) New insights in the molecular biology and physiology of Streptococcus thermophilus revealed by comparative genomics. FEMS Microbiol Rev 29: 435463.
  • Hugenholtz P (1998) The Genera of Lactic Acid Bacteria, Blackie Academic & Professional, London, UK.
  • Jay JM (1996) Modern Food Microbiology, Chapman & Hall, New York, NY.
  • Karp PD, Paley S & Romero P (2002) The pathway tools software. Bioinformatics 18: S225S232.
  • Klaenhammer TR (1993) Genetics of bacteriocins produced by lactic acid bacteria. FEMS Microbiol Rev 12: 3985.
  • Klaenhammer T, Altermann E, Arigoni F et al. (2002) Discovering lactic acid bacteria by genomics. Antonie Van Leeuwenhoek 82: 2958.
  • Klaenhammer TR, Barrangou R, Buck BL, Azcarate-Peril MA & Altermann E (2005) Genomic features of lactic acid bacteria effecting bioprocessing and health. FEMS Microbiol Rev 29: 393409.
  • Kleerebezem M, Boekhorst J, Van Kranenburg R et al. (2003) Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci USA 100: 19901995.
  • Konstantinidis KT & Tiedje JM (2004) Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci USA 101: 31603165.
  • Li Y, Raftis E, Canchaya C, Fitzgerald GF, Van Sinderen D & O'Toole PW (2006) Polyphasic analysis indicates that Lactobacillus salivarius subsp. salivarius and Lactobacillus salivarius subsp. salicinius do not merit separate subspecies status. Int J Sys Evol Microbiol 56: 23972403.
  • Makarova K, Slesarev A, Wolf Y et al. (2006) Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci USA 103: 1561115616.
  • McAuliffe O, Cano RJ & Klaenhammer TR (2005) Genetic analysis of two bile salt hydrolase activities in Lactobacillus acidophilus NCFM. Appl Environ Microbiol 71: 49254929.
  • Mercenier A, Pavan S & Pot B (2003) Probiotics as biotherapeutic agents: present knowledge and future prospects. Curr Pharm Des 9: 175191.
  • Molenaar D, Bringel F, Schuren FH, De Vos WM, Siezen RJ & Kleerebezem M (2005) Exploring Lactobacillus plantarum genome diversity by using microarrays. J Bacteriol 187: 61196127.
  • Molin G, Jeppsson B, Johansson ML, Ahrne S, Nobaek S, Stahl M & Bengmark S (1993) Numerical taxonomy of Lactobacillus spp. associated with healthy and diseased mucosa of the human intestines. J Appl Bacteriol 74: 314323.
  • Moretro T, Naterstad K, Wang E, Aasen IM, Chaillou S, Zagorec M & Axelsson L (2005) Sakacin P non-producing Lactobacillus sakei strains contain homologues of the sakacin P gene cluster. Res Microbiol 156: 949960.
  • Perdigon G, De Moreno de LeBlanc A, Valdez J & Rachid M (2002) Role of yoghurt in the prevention of colon cancer. Eur J Clin Nutr 56: S65S68.
  • Pot B, Ludwig W, Kersters K & Schleifer KH (1994) Taxonomy of lactic acid bacteria. Bacteriocins of Lactic Acid Bacteria: Genetics and Applications (De VuystL & VandammeEJ, eds), pp. 1389. Chapman & Hall, Glasgow, UK.
  • Pridmore RD, Berger B, Desiere F et al. (2004) The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. Proc Natl Acad Sci USA 101: 25122517.
  • Rogosa M, Wiseman RF, Mitchell JA, Disraely MN & Beaman AJ (1953) Species differentiation of oral lactobacilli from man including description of Lactobacillus salivarius nov spec and Lactobacillus cellobiosus nov spec. J Bacteriol 65: 681699.
  • Sanders ME (2003) Probiotics: considerations for human health. Nutr Rev 61: 9199.
  • Schleifer KH & Ludwig V (1995) Phylogenetics relationships of lactic acid bacteria. The Genera of Lactic Acid Bacteria, Vol. 2. (WoodBJB & HolzapfelWH, eds), pp. 717. Chapman & Hall, Glasgow, UK.
  • Siezen RJ, Van Enckevort FH, Kleerebezem M & Teusink B (2004) Genome data mining of lactic acid bacteria: the impact of bioinformatics. Curr Opin Biotechnol 15: 105115.
  • Stiles ME (1996) Biopreservation by lactic acid bacteria. Antonie Van Leeuwenhoek 70: 331345.
  • Teusink B, Van Enckevort FH, Francke C, Wiersma A, Wegkamp A, Smid EJ & Siezen RJ (2005) In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments. Appl Environ Microbiol 71: 72537262.
  • Van De Guchte M, Penaud S, Grimaldi C et al. (2006) The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. Proc Natl Acad Sci USA 103: 92749279.
  • Van Pijkeren J-P, Canchaya C, Ryan KA et al. (2006) Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118. App Environ Microbiol 72: 41434153.
  • Ventura M, Canchaya C, Pridmore RD & Brussow H (2004) The prophages of Lactobacillus johnsonii NCC 533: comparative genomics and transcription analysis. Virology 320: 229242.
  • Ventura M, Canchaya C, Bernini V et al. (2006) Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius and Lactobacillus casei. Appl Environ Microbiol 72: 31303146.
  • Wels M, Francke C, Kerkhoven R, Kleerebezem M & Siezen RJ (2006) Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups. Nucleic Acids Res 34: 19471958.