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  • Aldor LS & Keasling JD (2003) Process design for microbial plastic factories: metabolic engineering of polyhydroxyalkanoates. Curr Opin Biotechnol 14: 475483.
  • Azevedo JL, Maccheroni J Jr, Pereira O & Ara WL (2000) Endophytic microorganisms: a review on insect control and recent advances on tropical plants. Electr J Biotech 3: 4065.
  • Barac T, Taghavi S, Borremans B, Provoost A, Oeyen L, Colpaert JV, Vangronsveld J & Van Der Lelie D (2004) Engineered endophytic bacteria improve phyto-remediation of water-soluble, volatile, organic pollutants. Nat Biotechnol 22: 583588.
  • Beatty PH & Jensen SE (2002) Paenibacillus polymyxa produces fusaricidin-type antifungal antibiotics active against Leptosphaeria maculans, the causative agent of blackleg disease of canola. Can J Microbiol 48: 159169.
  • Beck HC, Hansen AM & Lauritsen FR (2003) Novel pyrazine metabolites found in polymyxin biosynthesis by Paenibacillus polymyxa. FEMS Microbiol Lett 220: 6773.
  • Bent E & Chanway CP (1998) The growth-promoting effects of a bacterial endophyte on lodgepole pine are partially inhibited by the presence of other rhizobacteria. Can J Microbiol 44: 980988.
  • Berg G & Hallmann J (2006) Control of plant pathogenic fungi with bacterial endophytes. Microbial Root Endophytes (SchulzBJE, BoyleCJC & SieberTN, eds), pp. 5369. Springer-Verlag, Berlin.
  • Berg G, Eberl L & Hartmann A (2005) The rhizosphere as a reservoir for opportunistic human pathogenic bacteria. Environ Microbiol 7: 16731685.
  • Büttner D & Bonas U (2006) Who comes first? How plant pathogenic bacteria orchestrate type III secretion. Cur Opin Microbiol 9: 193200.
  • Castillo UF, Strobel GA, Ford EJ et al. (2002) Munumbicins, wide-spectrum antibiotics produced by Streptomyces NRRL 30562, endophytic on Kennedia nigriscans. Microbiology 148: 26752685.
  • Castillo U, Harper JK, Strobel GA et al. (2003) Kakadumycins, novel antibiotics from Streptomyces sp. NRRL 30566, an endophyte of Grevillea pteridifolia. FEMS Microbiol Lett 224: 183190.
  • Catalán AI, Ferreira F, Gill PR & Batista S (2007) Production of polyhydroxyalkanoates by Herbaspirillum seropedicae grown with different sole carbon sources and on lactose when engineered to express the lacZlacY genes. Enzyme Microbial Technol 40: 13521367.
  • Chanway CP (1997) Inoculation of tree roots with plant growth promoting soil bacteria: an emerging technology for reforestation. Forest Sci 43: 99112.
  • Compant S, Duffy B, Nowak J, Cl C & Barka EA (2005a) Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl Environ Microbiol 71: 49514959.
  • Compant S, Reiter B, Sessitsch A, Nowak J, Clément C & Barka EA (2005b) Endophytic colonization of Vitis vinifera L. by a plant growth-promoting bacterium, Burkholderia sp. strain PsJN. Appl Environ Microbiol 71: 16851693.
  • Costa JM & Loper JE (1994) Characterization of siderophore production by the biological-control agent Enterobacter cloacae. Mol Plant Microbe Interact 7: 440448.
  • Duijff BJ, Gianinazzi-Pearsonand V & Lemanceau P (1997) Involvement of the outer membrane lipopolysaccharides in the endophytic colonization of tomato roots by biocontrol Pseudomonas fluorescens strain WCS417r. New Phytol 135: 325334.
  • Elvira-Recuenco M & Van Vuurde JWL (2000) Natural incidence of endophytic bacteria in pea cultivars under field conditions. Can J Microbiol 46: 10361041.
  • Ezra D, Castillo UF, Strobel GA et al. (2004) Coronamycins, peptide antibiotics produced by a verticillate Streptomyces sp. (MSU-2110) endophytic on Monstera sp. Microbiology 150: 785793.
  • Franks A, Ryan PR, Abbas A, Mark GL & O'Gara F (2006) Molecular Tools for Studying Plant Growth-Promoting Rhizobacteria (PGPR): Molecular Techniques for Soil and Rhizosphere Microorganisms. CABI Publishing, Wallingford, Oxfordshire, UK.
  • Gage DJ, Bobo T & Long SR (1996) Use of green fluorescent protein to visualize early events of symbiosis between Rhizobium meliloti and alfalfa (Medicago sativa). J Bacteriol 178: 71597166.
  • Germaine K (2007) Construction of endophytic xenobiotic degrader bacteria for improving the phytoremediation of organic pollutants. PhD Thesis. Institute of Technology Carlow, Ireland.
  • Germaine K, Keogh E, Borremans B et al. (2004) Colonisation of poplar trees by gfp expressing bacterial endophytes. FEMS Microbiol Ecol 48: 109118.
  • Germaine K, Liu X, Cabellos G, Hogan J, Ryan D & Dowling DN (2006) Bacterial endophyte-enhanced phyto-remediation of the organochlorine herbicide 2,4-dichlorophenoxyacetic acid. FEMS Microbiol Ecol 57: 302310.
  • Gray EJ & Smith DL (2005) Intracellular and extracellular PGPR: commonalities and distinctions in the plant-bacterium signalling processes. Soil Biol Biochem 37: 395412.
  • Guan SH, Sattler I, Lin WH, Guo DA & Grabley S (2005) p-Aminoacetophenonic acids produced by a mangrove endophyte: Streptomyces griseus subspecies. J Nat Prod 68: 11981200.
  • Guo B, Dai JR, Ng S, Huang Y, Leong C, Ong W & Carte BK (2000) Cytonic acids A and B: novel tridepside inhibitors of hCMV protease from the endophytic fungus Cytonaema species. J Nat Prod 63: 602604.
  • Hallmann J, Quadt-Hallmann A, Mahaffee WF & Kloepper JW (1997) Bacterial endophytes in agricultural crops. Can J Microbiol 43: 895914.
  • Hallmann J, Quadt-Hallmann A, Rodríguez-Kábana R & Kloepper JW (1998) Interactions between Meloidogyne incognita and endophytic bacteria in cotton and cucumber. Soil Biol Biochem 30: 925937.
  • Holliday P (1989) A Dictionary of Plant Pathology. Cambridge University Press, Cambridge.
  • Hurek T & Reinhold-Hurek B (2003) Azoarcus sp. strain BH72 as a model for nitrogen-fixing grass endophytes. J Biotech 106: 169178.
  • James EK, Gyaneshwar P, Mathan N, Barraquio WL, Reddy PM, Iannetta PP, Olivares FL & Ladha JK (2002) Infection and colonization of rice seedlings by the plant growth-promoting bacterium Herbaspirillum seropedicae Z67. Mol Plant Microbe Interact 15: 894906.
  • Kalia VC, Chauhan A & Bhattacharyya G (2003) Genomic databases yield novel bioplastic producers. Nat Biotechnol 21: 845846.
  • Kerry BR (2000) Rhizosphere interactions and the exploitation of microbial agents for the biological control of plant-parasitic nematodes. Ann Rev Phytopath 38: 423441.
  • Kloepper JW & Ryu C-M (2006) Bacterial endophytes as elicitors of induced systemic resistance. Microbial Root Endophytes (SchulzBJE, BoyleCJC & SieberTN, eds), pp. 33-52. Springer-Verlag, Berlin.
  • Kloepper JW, Rodriguez-Kabana R, Zehnder GW, Murphy J, Sikora E & Fernandez C (1999) Plant root-bacterial interactions in biological control of soil borne diseases and potential extension to systemic and foliar diseases. Aust J Plant Pathol 28: 2733.
  • Krause A, Ramakumar A, Bartels D et al. (2006) Complete genome of the mutualistic N2-fixing grass endophyte Azoarcus sp. strain BH72. Nat Biotech 24: 13851391.
  • Krishnamurthy K & Gnanamanickam SS (1997) Biological control of sheath blight of rice: induction of systemic resistance in rice by plant-associated Pseudomonas spp. Curr Sci 72: 331334.
  • Kuiper I, Lagendijk EL, Bloemberg GV & Lugtenberg BJ (2004) Rhizoremediation: a beneficial plant–microbe interaction. Mol Plant Microbe Interact 17: 615.
  • Larrainzar E, O'Gara F & Morrissey JP (2005) Applications of autofluorescent proteins for in situ studies in microbial ecology. Ann Rev Microbiol 59: 257277.
  • Lee S, Flores-Encarnacion M, Contreras-Zentella M, Garcia-Flores L, Escamilla JE & Kennedy C (2004) Indole-3-acetic acid biosynthesis is deficient in Gluconacetobacter diazotrophicus strains with mutations in cytochrome C biogenesis genes. J Bacteriol 186: 53845391.
  • Lemoigne M (1926) Produit de déshydratation et de polymérisation de l'acide β-oxybutyrique. Bull Soc Chem Biol 8: 770782.
  • Leveau JH & Lindow SE (2001) Appetite of an epiphyte: quantitative monitoring of bacterial sugar consumption in the phyllosphere. Proc Natl Acad Sci USA 98: 34463453.
  • Li J, Beatty PK, Shah S & Jensen SE (2007) Use of PCR-targeted mutagenesis to disrupt production of Fusaricidin-type antifungal antibiotics in Paenibacillus polymyxa. Appl Environ Microbiol 73: 34803489.
  • Lindow SE & Brandl MT (2003) Microbiology of the phyllosphere. Appl Environ Microbiol 69: 18751883.
  • Lodewyckx C, Taghavi S, Mergeay M, Vangronsveld J, Clijsters H & Van Der Lelie D (2001) The effect of recombinant heavy metal resistant endophytic bacteria in heavy metal uptake by their host plant. Int J Phytoremediation 3: 173187.
  • Lodewyckx C, Vangronsveld J, Porteous F, Moore ERB, Taghavi S, Mezgeay M & Van Der Lelie D (2002) Endophytic bacteria and their potential applications. Crit Rev Plant Sci 21: 583606.
  • Mannisto MK, Tiirola MA & Puhakka JA (2001) Degradation of 2,3,4,6-tetrachlorophenol at low temperature and low dioxygen concentrations by phylogenetically different groundwater and bioreactor bacteria. Biodegradation 12: 291301.
  • Miche L & Balandreau J (2001) Effects of rice seed surface sterilization with hypochlorite on inoculated Burkholderia vietnamiensis. Appl Environ Microbiol 67: 30463052.
  • Miche L, Battistoni F, Gemmer S, Belghazi M & Reinhold-Hurek B (2006) Up regulation of jasmonate-inducible defense proteins and differential colonization of roots of Oryza sativa cultivars with the endophyte Azoarcus sp. Mol Plant Microbe Interact 19: 502511.
  • Miller CM, Miller RV, Garton-Kenny D, Redgrave B, Sears J, Condron MM, Teplow DB & Strobel GA (1998) Ecomycins, unique antimycotics from Pseudomonas viridiflava. J Appl Microbiol 84: 937944.
  • Newman L & Reynolds C (2005) Bacteria and phyto-remediation: new uses for endophytic bacteria in plants. Trends Biotechnol 23: 68.
  • Ping L & Boland W (2004) Signals from the underground: bacterial volatiles promote growth in Arabidopsis. Trends Plant Sci 9: 263266.
  • Pirttila A, Joensuu P, Pospiech H, Jalonen J & Hohtola A (2004) Bud endophytes of Scots pine produce adenine derivatives and other compounds that affect morphology and mitigate browning of callus cultures. Physiol Plant 121: 305312.
  • Ponka A, Andersson Y, Siitonen A, De Jong B, Jahkola M, Haikala O, Kuhmonen A & Pakkala P (1995) Salmonella in alfalfa sprouts. Lancet 345: 462463.
  • Porteous-Moore F, Barac T, Borremans B, Oeyen L, Vangronsveld J, Van Der Lelie D, Campbell D & Moore ERB (2006) Endophytic bacterial diversity in poplar trees growing on a BTEX-contaminated site: the characterisation of isolates with potential to enhance phytoremediation. Sys App Micro 29: 539556.
  • Posada F & Vega FE (2005) Establishment of the fungal entomopathogen Beauveria bassiana (Ascomycota: Hypocreales) as an endophyte in cocoa seedlings (Theobroma cacao). Mycologia 97: 11951200.
  • Preston GM, Bertrand N & Rainey PB (2001) Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25. Mol Microbiol 41: 9991014.
  • Rainey PB (1999) Adaptation of Pseudomonas fluorescens to the plant rhizosphere. Env Microbiol 1: 243257.
  • Reiter B & Sessitsch A (2006) Bacterial endophytes of the wildflower Crocus albiflorus analyzed by characterization of isolates and by a cultivation-independent approach. Can J Microbiol 52: 140149.
  • Rosenblueth M & Martinez-Romero E (2006) Bacterial endophytes and their interactions with hosts. Mol Plant Microbe Interact 19: 827837.
  • Ryan RP, Ryan DJ, Sun YC, Li F-M, Wang Y & Dowling DN (2007a) An acquired efflux system is responsible for copper resistance in Xanthomonas strain IG-8 isolated from China. FEMS Microbiol Lett 268: 4046.
  • Ryan RP, Ryan DJ & Dowling DN (2007b) Plant protection by the recombinant, root-colonising Pseudomonas fluorescens F113rifPCB strain expressing arsenic resistance: improving rhizoremediation. Lett Appl Microbiol in press.
  • Schulz B & Boyle C (2006) What are endophytes? Microbial Root Endophytes (SchulzBJE, BoyleCJC & SieberTN, eds), pp. 1–13. Springer-Verlag, Berlin.
  • Siciliano SD, Goldie H & Germida JJ (1998) Enzymatic activity in root exudates of dahurian wild rye (Elymus dauricus) that degrades 2-chlorobenzoic acid. J Agric Food Chem 46: 57.
  • Siciliano S, Fortin N, Himoc N et al. (2001) Selection of specific endophytic bacterial genotypes by plants in response to soil contamination. Appl Environ Microbiol 67: 24692475.
  • Strobel GA, Stierle A, Stierle D & Hess WM (1993) Taxomyces andreanae a proposed new taxon for a bulbilliferous hyphomycete associated with Pacific yew Mycotaxon. 47: 7178.
  • Strobel G, Daisy B, Castillo U & Harper J (2004) Natural products from endophytic microorganisms. J Nat Prod 67: 257268.
  • Sturz AV & Matheson BG (1996) Populations of endophytic bacteria which influence host-resistance to Erwinia-induced bacterial soft rot in potato tubers. Plant Soil 184: 265271.
  • Sturz AV, Christie BR & Nowak J (2000) Bacterial endophytes: potential role in developing sustainable systems of crop production. Crit Rev Plant Sci 19: 130.
  • Taghavi S, Barac T, Greenberg B, Borremans B, Vangronsveld J & Van Der Lelie D (2005) Horizontal gene transfer to endogenous endophytic bacteria from poplar improved phyto-remediation of toluene. Appl Environ Microbiol 71: 85008505.
  • Tombolini R & Jansson JK (1998) Monitoring of GFP-tagged bacterial cells. Methods in Molecular Biology: bioluminescence Methods and Protocols (LaRossaRA, ed.), pp. 285298. Humana Press Inc., Totowa, NJ.
  • Tombolini R, Unge A, Davey ME, De Bruijn FJ & Jansson JK (1997) Flow cytometric and microscopic analysis of GFP-tagged Pseudomonas fluorescens bacteria. FEMS Microbiol Ecol 22: 1728.
  • Van Aken B, Peres C, Doty S, Yoon J & Schnoor J (2004) Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-ultilising bacterium isolated from poplar trees (Populus deltoides x nigra DN34). Evol Microbiol 54: 11911196.
  • Van Loon LC, Bakker PA & Pieterse CMJ (1998) Systemic resistance induced by rhizosphere bacteria. Ann Rev Phyto 36: 453483.
  • Verma SC, Ladha JK & Tripathi AK (2001) Evaluation of plant growth promoting and colonization ability of endophytic diazotrophs from deep water rice. J Biotechnol 91: 127141.
  • Villacieros M, Power B, Sánchez-Contreras B et al. (2003) Colonization behaviour of Pseudomonas fluorescens and Sinorhizobium meliloti in the alfalfa (Medicago sativa) rhizosphere. Plant Soil 251: 4754.
  • Wakelin S, Warren R, Harvey P & Ryder M (2004) Phosphate solubilization by Penicillium spp. closely associated with wheat roots. Bio Fert Soils 40: 3643.
  • Xi C, Lambrecht M, Vanderleyden J & Michiels J (1999) Bi-functional gfp-and gusA-containing mini-Tn5 transposon derivatives for combined gene expression and bacterial localization studies. J Microbiol Methods 35: 8592.
  • Zhang XX, George A, Bailey MJ & Rainey PB (2006) The histidine utilization (hut) genes of Pseudomonas fluorescens SBW25 are active on plant surfaces, but are not required for competitive colonization of sugar beet seedlings. Microbiology 152: 18671875.
  • Zinniel DK, Lambrecht P, Harris BN et al. (2002) Isolation and characterization of endophytic colonizing bacteria from agronomic crops and prairie plants. Appl Environ Microbiol 68: 21982208.