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  • Altermann E, Russell WM, Azcarate-Peril MA et al. (2005) Inaugural article: from the cover: complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. P Natl Acad Sci USA 102: 39063912.
  • Barrangou R, Altermann E, Hutkins R, Cano R & Klaenhammer TR (2003) Functional and comparative genomic analyses of an operon involved in fructooligosaccharide utilization by Lactobacillus acidophilus. P Natl Acad Sci USA 100: 89578962.
  • Barrangou R, Fremaux C, Deveau H et al. (2007) CRISPR provides acquired resistance against viruses in prokaryotes. Science 315: 17091712.
  • Bolotin A, Quinquis B, Renault P et al. (2004) Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. Nat Biotechnol 22: 15541558.
  • Callanan M, Kaleta P, O'Callaghan J et al. (2008) Genome sequence of Lactobacillus helveticus, an organism distinguished by selective gene loss and insertion sequence element expansion. J Bacteriol 190: 727735.
  • Canchaya C, Proux C, Fournous G, Bruttin A & Brussow H (2003) Prophage genomics. Microbiol Mol Biol Rev 67: 238276.
  • Candela M, Perna F, Carnevali P et al. Interaction of probiotic Lactobacillus and Bifidobacterium strains with human intestinal epithelial cells: adhesion properties, competition against enteropathogens and modulation of IL-8 production. Int J Food Microbiol 125: 286292.
  • Claesson MJ, Li Y, Leahy S et al. (2006) From the cover: multireplicon genome architecture of Lactobacillus salivarius. P Natl Acad Sci USA 103: 67186723.
  • Corr SC, Li Y, Riedel CU, O'Toole PW, Hill C & Gahan CGM (2007) From the cover: bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118. P Natl Acad Sci USA 104: 76177621.
  • Delcenserie VMD, Lamoureux M, Amiot J, Boutin Y & Roy D (2008) Immunomodulatory effects of probiotics in the intestinal tract. Curr Issues Mol Biol 10: 3754.
  • Denou E, Pridmore RD, Berger B, Panoff J-M, Arigoni F & Brussow H (2008) Identification of genes associated with the long-gut-persistence phenotype of the probiotic Lactobacillus johnsonii strain NCC533 using a combination of genomics and transcriptome analysis. J Bacteriol 190: 31613168.
  • FAO/WHO (2001) Health and nutritional properties of probiotics in food including powdered milk with live lactic acid bacteria. http://www.who.int/foodsafety/publications/fs_management/en/probiotics.pdf
  • Gálvez A, Abriouel H, López RL & Omar NB (2007) Bacteriocin-based strategies for food biopreservation. Int J Food Microbiol 120: 5170.
  • Gasson MJ (1990) In vivo genetic systems in lactic acid bacteria. FEMS Microbiol Rev 7: 4360.
  • Goh YJ, Zhang C, Benson AK, Schlegel V, Lee J-H & Hutkins RW (2006) Identification of a putative operon involved in Fructooligosaccharide utilization by Lactobacillus paracasei. Appl Environ Microb 72: 75187530.
  • Hayashi H, Takahashi R, Nishi T, Sakamoto M & Benno Y (2005) Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J Med Microbiol 54: 10931101.
  • Heilig HGHJ, Zoetendal EG, Vaughan EE, Marteau P, Akkermans ADL & De Vos WM (2002) Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl Environ Microb 68: 114123.
  • Klaenhammer TR, Barrangou R, Buck BL, Azcarate-Peril MA & Altermann E (2005) Genomic features of lactic acid bacteria effecting bioprocessing and health. FEMS Microbiol Rev 29: 393409.
  • Kleerebezem M, Boekhorst J, Van Kranenburg R et al. (2003) Complete genome sequence of Lactobacillus plantarum WCFS1. P Natl Acad Sci USA 100: 19901995.
  • Leer RJ, Christiaens H, Verstraete W, Peters L, Posno M & Pouwels PH (1993) Gene disruption in Lactobacillus plantarum strain 80 by site-specific recombination: isolation of a mutant strain deficient in conjugated bile salt hydrolase activity. Mol Gen Genet 239: 269272.
  • Lorca GL, Barabote RD, Zlotopolski V et al. (2007) Transport capabilities of eleven gram-positive bacteria: comparative genomic analyses. BBA Biomembranes 1768: 13421366.
  • Makarova K, Slesarev A, Wolf Y et al. (2006) Comparative genomics of the lactic acid bacteria. P Natl Acad Sci USA 103: 1561115616.
  • Makarova KS & Koonin EV (2007) Evolutionary genomics of lactic acid bacteria. J Bacteriol 189: 11991208.
  • Martoni CBJ, Urbanska AM & Prakash S (2008) Microencapsulated bile salt hydrolase producing Lactobacillus reuteri for oral targeted delivery in the gastrointestinal tract. Appl Microbiol Biotechnol 81: 225233.
  • McAuliffe O, Cano RJ & Klaenhammer TR (2005) Genetic analysis of two bile salt hydrolase activities in Lactobacillus acidophilus NCFM. Appl Environ Microb 71: 49254929.
  • McKay LL (1983) Functional properties of plasmids in lactic streptococci. Antonie Van Leeuwenhoek 49: 259274.
  • Pfeiler EA & Klaenhammer TR (2007) The genomics of lactic acid bacteria. Trends in Microbiol 15: 546553.
  • Pfeiler EA, Azcarate-Peril MA & Klaenhammer TR (2007) Characterization of a novel bile-inducible operon encoding a two-component regulatory system in Lactobacillus acidophilus. J Bacteriol 189: 46244634.
  • Pridmore RD, Berger B, Desiere F et al. (2004) The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. P Natl Acad Sci USA 101: 25122517.
  • Reid G, Jass J, Sebulsky MT & McCormick JK (2003) Potential uses of probiotics in clinical practice. Clin Microbiol Rev 16: 658672.
  • Siezen RJ, Renckens B, Van Swam I, Peters S, Van Kranenburg R, Kleerebezem M & De Vos WM (2005) Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment. Appl Environ Microb 71: 83718382.
  • Sit CS & Vederas JC (2008) Approaches to the discovery of new antibacterial agents based on bacteriocins. Biochem Cell Biol 86: 116123.
  • Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER & Gordon JI (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 10271131.
  • Turnbaugh PJ, Bäckhed F, Fulton L & Gordon JI (2008) Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3: 213223.
  • Van De Guchte M, Penaud S, Grimaldi C et al. (2006) The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution. P Natl Acad Sci USA 103: 92749279.
  • Ventura M, Canchaya C, Bernini V et al. (2006) Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei. Appl Environ Microb 72: 31303146.
  • Wegmann U, O'Connell-Motherway M, Zomer A et al. (2007) Complete genome sequence of the prototype lactic acid bacterium Lactococcus lactis subsp. cremoris MG1363. J Bacteriol 189: 32563270.
  • Whitehead K, Versalovic J, Roos S & Britton RA (2008) Genomic and genetic characterization of the bile stress response of probiotic Lactobacillus reuteri ATCC 55730. Appl Environ Microb 74: 18121819.