• Aziz RK, Edwards RA, Taylor WW, Low DE, McGeer A & Kotb M (2005) Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of Streptococcus pyogenes. J Bacteriol 187: 33113318.
  • Banks DJ, Porcella SF, Barbian KD, Beres SB, Philips LE, Voyich JM, DeLeo FR, Martin JM, Somerville GA & Musser JM (2004) Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. J Infect Dis 190: 727738.
  • Beres SB & Musser JM (2007) Contribution of exogenous genetic elements to the group A Streptococcus metagenome. PLoS ONE 2: e800.
  • Beres SB, Sylva GL, Barbian KD et al. (2002) Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence. P Natl Acad Sci USA 99: 1007810083.
  • Beres SB, Richter EW, Nagiec MJ, Sumby P, Porcella SF, Deleo FR & Musser JM (2006) Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus. P Natl Acad Sci USA 103: 70597064.
  • Canchaya C, Desiere F, McShan WM, Ferretti JJ, Parkhill J & Brussow H (2002) Genome analysis of an inducible prophage and prophage remnants integrated in the Streptococcus pyogenes strain SF370. Virology 302: 245258.
  • Enright MC, Spratt BG, Kalia A, Cross JH & Bessen DE (2001) Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone. Infect Immun 69: 24162427.
  • Ferretti JJ, McShan WM, Ajdic D et al. (2001) Complete Genome Sequence of an M1 Strain of Streptococcus pyogenes. P Natl Acad Sci USA 98: 46584663.
  • Ferretti JJ, Ajdic D & McShan WM (2004) Comparative genomics of streptococcal species. Indian J Med Res 119 (suppl): 16.
  • Green NM, Zhang S, Porcella SF, Nagiec MJ, Barbian KD, Beres SB, Lefebvre RB & Musser JM (2005) Genome sequence of a serotype M28 strain of Group A Streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity. J Infect Dis 192: 760770.
  • Holden MT, Scott A, Cherevach I et al. (2007) Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo. J Bacteriol 189: 14731487.
  • Ikebe T, Endo M, Ueda Y et al. (2004) The genetic properties of Streptococcus pyogenes emm49 genotype strains recently emerged among severe invasive infections in Japan. Jpn J Infect Dis 4: 187188.
  • Luca-Harari B, Ekelund K, Van Der Linden M, Staum-Kaltoft M, Hammerum AM & Jasir A (2008) Clinical and epidemiological aspects of invasive Streptococcus pyogenes infections in Denmark during 2003 and 2004. J Clin Microbiol 46: 7986.
  • Matic I, Radman M, Taddei F, Picard B, Doit C, Bingen E, Denamur E & Elion J (1997) Highly variable mutation rates in commensal and pathogenic Escherichia coli. Science 277: 18331834.
  • McShan WM & Ferretti JJ (2007) Bacteriophages and their contribution in the host cell phenotype. Bacteriophages: Genetics and Molecular Biology (McGrathS & Douwe vanSinderen, eds), 343 pp. Caister Academic Press, Norwich, UK.
  • McShan WM, Tang Y-F & Ferretti JJ (1997) Bacteriophage T12 of Streptococcus pyogenes integrates into the gene for a serine tRNA. Mol Microbiol 23: 719728.
  • McShan WM, Ferretti JJ, Karasawa T et al. (2008) Analysis of the complete genome sequence of NZ131, a highly transformable nephritogenic M49 strain of Streptococcus pyogenes. J Bacteriol 190: 77737785.
  • Nakagawa I, Kurokawa K, Yamashita A et al. (2003) Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution. Genome Res 13: 10421055.
  • Podbielski A, Zarges I, Flosdorff A & Weber-Heynemann J (1996) Molecular characterization of a major serotype M49 group A streptococcal DNase gene (sdaD). Infect Immun 64: 53495356.
  • Radman M, Taddei F & Matic I (2000) DNA repair systems and bacterial evolution. Cold Spring Harb Sym 65: 1119.
  • Rozen S & Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology (KrawetzS & MisenerS, eds), pp. 365386. Humana Press, Totowa, NJ.
  • Scott J, Thompson-Mayberry P, Lahmamsi S, King CJ & McShan WM (2008) Phage-associated mutator phenotype in group A Streptococcus. J Bacteriol 190: 62906301.
  • Smoot JC, Barbian KD, Van Gompel JJ et al. (2002) Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks. P Natl Acad Sci USA 99: 46684673.
  • Sumby P, Porcella SF, Madrigal AG et al. (2005) Evolutionary origin and emergence of a highly successful clone of serotype M1 group A Streptococcus involved multiple horizontal gene transfer events. J Infect Dis 192: 771782.