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  • Adékambi T & Drancourt M (2004) Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. Int J Syst Evol Micr 54: 20952105.
  • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W & Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Azuma Y, Hosoyama A, Matsutani M et al. (2009) Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus. Nucleic Acids Res 37: 57685783.
  • Bertalan M, Albano R, de Pádua V et al. (2009) Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5. BMC Genomics 10: 450.
  • Boesch C, Trček J, Sievers M & Teuber M (1998) Acetobacter intermedius, sp. nov. Syst Appl Microbiol 21: 220229.
  • Cleenwerck I, Camu N, Engelbeen K, De Winter T, Vandemeulebroecke K, De Vos P & De Vuyst L (2007) Acetobacter ghanensis sp. nov., a novel acetic acid bacterium isolated from traditional heap fermentations of Ghanaian cocoa beans. Int J Syst Evol Micr 57: 16471652.
  • Cleenwerck I, Gonzalez A, Camu N, Engelbeen K, De Vos P & De Vuyst L (2008) Acetobacter fabarum sp. nov., an acetic acid bacterium from a Ghanaian cocoa bean heap fermentation. Int J Syst Evol Micr 58: 21802185.
  • Gontcharov AA, Marin B & Melkonian M (2003) Are combined analyses better than single gene phylogenies? A case study using SSU rDNA and rbcL sequence comparisons in the Zygnematophyceae (Streptophyta). Mol Biol Evol 21: 612624.
  • Greenberg DE, Porcella SF, Zelazny AM, Virtaneva K, Sturdevant DE, Kupko JJ III, Barbian KD, Babar A, Dorward DW & Holland SM (2007) Genome sequence analysis of the emerging human pathogenic acetic acid bacterium Granulibacter bethesdensis. J Bacteriol 189: 87278736.
  • Kanehisa M (1997) A database for post-genome analysis. Trends Genet 13: 375376.
  • Kanehisa M & Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 2730.
  • Kanehisa M, Goto S, Kawashima S & Nakaya A (2002) The KEGG databases at GenomeNet. Nucleic Acids Res 30: 4246.
  • Kanehisa M, Goto S, Kawashima S, Okuno Y & Hattori M (2004) The KEGG resource for deciphering the genome. Nucleic Acids Res 32 (Database issue): D277D280.
  • Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M & Hirakawa M (2006) From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res 34 (Database issue): D354D357.
  • Kanehisa M, Araki M, Goto S et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res 36 (Database issue): D480D484.
  • Kanehisa M, Goto S, Furumichi M, Tanabe M & Hirakawa M (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38: D355D360.
  • Kersters K, Lisdiyanti P, Komagata K & Swings J (2006) The family Acetobacteraceae: the genera Acetobacter, Acidomonas, Asaia, Gluconacetobacter, Gluconobacter, and Kozakia. The Prokaryotes: An Evolving Electronic Resource for the Microbiological Community, 3rd edn (DworkinM, FalkowS, RosenbergE, SchleiferKH & StackebrandtE, eds), pp. 163200. Springer-Verlag, New York.
  • Konstantinidis KT & Tiedje JM (2005) Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187: 62586264.
  • Larkin MA, Blackshields G, Brown NP et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 29472948.
  • Lisdiyanti P, Kawasaki H, Seki T, Yamada Y, Uchimura T & Komagata K (2000) Systematic study of the genus Acetobacter with descriptions of Acetobacter indonesiensis sp. nov., Acetobacter tropicalis sp. nov., Acetobacter orleanensis (Henneberg 1906) comb. nov., Acetobacter lovaniensis (Frateur 1950) comb. nov., and Acetobacter estunensis (Carr 1958) comb. nov. J Gen Appl Microbiol 46: 147165.
  • Lisdiyanti P, Kawasaki H, Seki T, Yamada Y, Uchimura T & Komagata K (2001) Identification of Acetobacter strains isolated from Indonesian sources, and proposals of Acetobacter syzygii sp. nov., Acetobacter cibinongensis sp. nov., and Acetobacter orientalis sp. nov. J Gen Appl Microbiol 47: 119131.
  • Matsushita K, Inoue T, Theeragol G, Trček J, Toyama H & Adachi O (2005) Acetic acid production in acetic acid bacteria leading to their ‘death’ and survival. Survival and Death in Bacteria (YamadaM, ed), pp. 169181. Research Signpost, Trivandrum, Kerala.
  • Morse R, O'Hanlon K & Collins MD (2002) Phylogenetic, amino acid content and indel analyses of the beta subunit of DNA-dependent RNA polymerase of Gram-positive and Gram-negative bacteria. Int J Syst Evol Micr 52: 14771484.
  • Mullins EA, Francois JA & Kappock TJ (2008) A specialized citric acid cycle requiring succinyl-coenzyme A (CoA):acetate CoA-transferase (AarC) confers acetic acid resistance on the acidophile Acetobacter aceti. J Bacteriol 190: 49334940.
  • Ogata H, Goto S, Sato K, Fujibuchi W, Bono H & Kanehisa M (1999) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 27: 2934.
  • Prust C, Hoffmeister M, Liesegang H, Wiezer A, Fricke WF, Ehrenreich A, Gottschalk G & Deppenmeier U (2005) Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nat Biotechnol 23: 195200.
  • Rokas A, Williams BL, King N & Carroll SB (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798804.
  • Schüller G, Hertel C & Hammes W (2000) Gluconacetobacter entanii sp. nov., isolated from submerged high-acid industrial vinegar fermentations. Int J Syst Evol Micr 50: 20132020.
  • Sievers M & Swings J (2005) Family II. Acetobacteraceae. Bergey's Manual of Systematic Bacteriology, Vol 2, The Proteobacteria (BrennerDJ, KriegNR, StaleyJT & GarrityGM, eds), pp. 4154. Springer, New York.
  • Sievers M & Teuber M (1995) The microbiology and taxonomy of Acetobacter europaeus in commercial vinegar production. J Appl Bacteriol 79: 8495.
  • Sokollek S, Hertel C & Hammes W (1998) Description of Acetobacter oboediens sp. nov. and Acetobacter pomorum sp. nov., two new species isolated from industrial vinegar fermentations. Int J Syst Bacteriol 48: 935940.
  • Stackebrandt E, Frederiksen W, Garrity GM et al. (2002) Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Micr 52: 10431047.
  • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961569.
  • Yamada Y, Hoshino K & Ishikawa T (1997) The phylogeny of acetic acid bacteria based on the partial sequences of 16S ribosomal RNA: the elevation of the subgenus Gluconoacetobacter to the generic level. Biosci Biotech Bioch 61: 12441251.
  • Yamamoto S & Harayama S (1998) Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes. Int J Syst Bacteriol 48: 813819.