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  • Abratt VR, Peak MJ, Peak JG, Santangelo JD & Woods DR (1990) Induction and repair of DNA strand breaks in Bacteroides fragilis. Can J Microbiol 36: 490494.
  • Abreu-Goodger C & Merino E (2005) RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. Nucleic Acids Res 33: 690692.
  • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W & Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Bachrati CZ & Hickson ID (2003) RecQ helicases: suppressors of tumorigenesis and premature aging. Biochem J 374: 577606.
  • Bayley DP, Rocha ER & Smith CJ (2000) Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure. FEMS Microbiol Lett 193: 149154.
  • Bennett RJ & Keck JL (2004) Structure and function of RecQ DNA helicases. Crit Rev Biochem Mol Biol 39: 7997.
  • Blatch GL & Lässle M (1999) The tetratricopeptide repeat: a structural motif mediating protein–protein interactions. BioEssays 21: 932939.
  • Casanueva AI, Paul L, Patrick S & Abratt VR (2008) An AraC/XylS family transcriptional regulator homologue from Bacteroides fragilis is associated with cell survival following DNA damage. FEMS Microbiol Lett 278: 249256.
  • Cerdeño-Tárraga AM, Patrick S & Crossman LL (2005) Extensive DNA inversions in the B. fragilis genome control variable gene expression. Science 307: 14631465.
  • Citron DM, Poxton IR & Baron EJ (2007) Bacteroides, Porphyromonas, Prevotella, Fusobacterium and other anaerobic Gram negative rods. Manual of Clinical Microbiology, Vol. 2 (MurrayPR, ed), pp. 911932. ASM Press, Washington, DC.
  • Courcelle J & Hanawalt PC (1999) RecQ and RecJ process blocked replication forks prior to the resumption of replication in UV-irradiated Escherichia coli. Mol Gen Genet 262: 543551.
  • Dachs GU, Abratt VR & Woods DR (1995) Mode of action of metronidazole and a Bacteroides fragilis metA resistance gene in Escherichia coli. J Antimicrob Chemoth 35: 483496.
  • Das AK, Cohen PTW & Barford D (1998) The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein–protein interactions. EMBO J 17: 11921199.
  • Fang H, Edlund C, Hedberg M & Nord CE (2002) New findings in beta-lactam and metronidazole resistant Bacteroides fragilis group. Int J Antimicrob Ag 19: 361370.
  • Hanada K, Ukita T, Kohno Y, Saito K, Kato J & Ikedo H (1997) RecQ DNA helicase is a suppressor of illegitimate recombination in Escherichia coli. P Natl Acad Sci USA 94: 38603865.
  • Hartung F & Puchta H (2006) The RecQ gene family in plants. J Plant Physiol 163: 287296.
  • Hooper LV, Xu J, Falk PG, Midtvedt T & Gordon JI (1999) A molecular sensor that allows a gut commensal to control its nutrient foundation in a competitive ecosystem. P Natl Acad Sci USA 96: 98339838.
  • Hua X, Huang L, Tian B & Hua B (2008) Involvement of recQ in the ultraviolet damage repair pathway in Deinococcus radiodurans. Mutat Res 641: 4853.
  • Jackson D, Salem A & Coombs GH (1984) The in-vitro activity of metronidazole against strains of Escherichia coli with impaired DNA repair systems. J Antimicrob Chemoth 13: 227236.
  • Jousimies-SomerH, SummanenP, CitronDM, BaronEJ, WexlerHM & FinegoldSM (eds) (2002) Wadsworth-KTL Anaerobic Bacteriology Manual, 6th edn. Star Publishing, Belmont, CA.
  • Killoran M & Keck J (2008) Structure and function of the regulatory C-terminal HRDC domain from Deinococcus radiodurans RecQ. Nucleic Acids Res 36: 31393149.
  • Kim K, Oh J, Han D, Kim E, Lee B & Kim Y (2006) Crystal structure of PilF: functional implication in the type 4 pilus biogenesis in Pseudomonas aeruginosa. Biochem Bioph Res Co 340: 10281038.
  • Mesak LR, Mesak FM & Dahl MK (2004) Expression of a novel gene, gluP, is essential for normal Bacillus subtilis cell division and contributes to glucose export. BMC Microbiol 4: 13.
  • Nariya H & Inouye S (2005) Modulating factors for the Pkn4 kinase cascade in regulating 6-phosphofructokinase in Myxococcus xanthus. Mol Microbiol 56: 13141328.
  • Patel EH, Paul LV, Patrick S & Abratt VR (2008) Rhamnose catabolism in Bacteroides thetaiotaomicron is controlled by the positive transcriptional regulator RhaR. Res Microbiol 159: 678684.
  • Privitera G, Dublanchet A & Sebald M (1979) Transfer of multiple antibiotic resistance between subspecies of Bacteroides fragilis. J Infect Dis 139: 97101.
  • Rodriguez-Soto JP & Kaiser D (1997) Identification and localization of the Tgl protein, which is required for Myxococcus xanthus social motility. J Bacteriol 179: 43724381.
  • Salyers A, Bonheyo G & Shoemaker N (2000) Starting a new genetic system: lessons from Bacteroides. Methods 20: 3546.
  • Sambrook J, Fritsch EF & Maniatis T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • Sigeti JS, Guiney DG Jr & Davis CE (1983) Mechanism of action of metronidazole on Bacteroides fragilis. J Infect Dis 148: 10831089.
  • Sikorski RS, Michaud WA & Hieter P (1993) p62cdc23 of Saccharomyces cerevisiae: a nuclear tetratricopeptide repeat protein with two mutable domains. Mol Cell Biol 13: 12121221.
  • Silvestro EM, Nakano V, Arana-Chavez VE, Marques MV & Avila-Campos MJ (2006) Effects of sub-inhibitory concentrations of clindamycin on the morphological, biochemical and genetic characteristics of Bacteroides fragilis. FEMS Microbiol Lett 257: 189194.
  • Simon R, Priefer U & Pühler A (1983) A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram negative bacteria. Bio/Technology 1: 784791.
  • Simpson KW, Dogan B, Rishniw M et al. (2006) Adherent and invasive Escherichia coli is associated with granulomatous colitis in boxer dogs. Infect Immun 74: 47784792.
  • Steffens LS, Nicholson S, Paul LV, Nord CE, Patrick S & Abratt VR (2010) Bacteroides fragilis RecA protein overexpression causes resistance to metronidazole. Res Microbiol 161: 346354.
  • Stohl EA & Seifert HS (2006) Neisseria gonorrhoeae DNA recombination and repair enzymes protect against oxidative damage caused by hydrogen peroxide. J Bacteriol 188: 76457651.
  • Sun P, Tropea JE, Austin BP, Cherry S & Waugh DS (2008) Structural characterization of the Yersinia pestis type III secretion system needle protein YscF in complex with its heterodimeric chaperone YscE/YscG. J Mol Biol 377: 819830.
  • Tamura K, Dudley J, Nei M & Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 15961599.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F & Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 48764882.
  • Trinh S & Reysset G (1998) Mutagenic action of 5-nitroimidazoles: in vivo induction of GC[RIGHTWARDS ARROW]CG transversion in two Bacteroides fragilis reporter genes. Mutat Res 398: 5565.
  • Wilde A, Lünser K, Ossenbühl F, Nickelsen J & Börner T (2001) Characterization of the cyanobacterial ycf37: mutation decreases the photosystem I content. Biochem J 357: 211216.
  • Wilson JB, Blom E, Cunningham R, Xiao Y, Kupfer GM & Jones NJ (2010) Several tetratricopeptide repeat (TPR) motifs of FANCG are required for assembly of the BRCA2/D1-D2-G-X3 complex, FANCD2 mono-ubiquitylation and phleomycin resistance. Mutat Res 689: 1220.
  • Yanisch-Perron C, Vieira J & Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33: 103119.
  • Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 34063415.