• Amonsin A, Li LL, Zhang Q, Bannantine JP, Motiwala AS, Sreevatsan S & Kapur V (2004) Multilocus short sequence repeat sequencing approach for differentiating among Mycobacterium avium subsp. paratuberculosis strains. J Clin Microbiol 42: 16941702.
  • Erali M & Wittwer CT (2010) High resolution melting analysis for gene scanning. Methods 50: 250261.
  • Ghadiali AH, Strother M, Naser SA, Manning EJ & Sreevatsan S (2004) Mycobacterium avium subsp. paratuberculosis strains isolated from Crohn's disease patients and animal species exhibit similar polymorphic locus patterns. J Clin Microbiol 42: 53455348.
  • Harris NB, Payeur JB, Kapur V & Sreevatsan S (2006) Short-sequence-repeat analysis of Mycobacterium avium subsp. paratuberculosis and Mycobacterium avium subsp. avium isolates collected from animals throughout the United States reveals both stability of loci and extensive diversity. J Clin Microbiol 44: 29702973.
  • Kibbe WA (2007) OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Res 35: W43W46.
  • Li L, Bannantine JP, Zhang Q, Amonsin A, May BJ, Alt D, Banerji N, Kanjilal S & Kapur V (2005) The complete genome sequence of Mycobacterium avium subspecies paratuberculosis. P Natl Acad Sci USA 102: 1234412349.
  • Motiwala AS, Li L, Kapur V & Sreevatsan S (2006) Current understanding of the genetic diversity of Mycobacterium avium subsp. paratuberculosis. Microbes Infect 8: 14061418.
  • Palais R & Wittwer CT (2009) Mathematical algorithms for high-resolution DNA melting analysis. Methods Enzymol 454: 323343.
  • Pierce KE, Sanchez JA, Rice JE & Wangh LJ (2005) Linear-after-the-exponential (LATE)-PCR: primer design criteria for high yields of specific single-stranded DNA and improved real-time detection. P Natl Acad Sci USA 102: 86098614.
  • Pribylova R, Kralik P & Pavlik I (2009) Oligonucleotide microarray technology and its application to Mycobacterium avium subsp. paratuberculosis research: a review. Mol Biotechnol 42: 3040.
  • Stevenson K, Alvarez J, Bakker D et al. (2009) Occurrence of Mycobacterium avium subspecies paratuberculosis across host species and European countries with evidence for transmission between wildlife and domestic ruminants. BMC Microbiol 9: 212.
  • Thibault VC, Grayon M, Boschiroli ML, Hubbans C, Overduin P, Stevenson K, Gutierrez MC, Supply P & Biet F (2007) New variable-number tandem-repeat markers for typing Mycobacterium avium subsp. paratuberculosis and M. avium strains: comparison with IS900 and IS1245 restriction fragment length polymorphism typing. J Clin Microbiol 45: 24042410.
  • Thibault VC, Grayon M, Boschiroli ML, Willery E, Allix-Béguec C, Stevenson K, Biet F & Supply P (2008) Combined multilocus short-sequence-repeat and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typing of Mycobacterium avium subsp. paratuberculosis isolates. J Clin Microbiol 46: 40914094.
  • Zhou L, Myers AN, Vandersteen JG, Wang L & Wittwer CT (2004) Closed-tube genotyping with unlabeled oligonucleotide probes and a saturating DNA dye. Clin Chem 50: 13281335.