SEARCH

SEARCH BY CITATION

References

  • Boyd VL, Moody KI, Karger AE, Livak KJ, Zon G & Burns JW (2006) Methylation-dependent fragment separation: direct detection of DNA methylation by capillary electrophoresis of PCR products from bisulfite-converted genomic DNA. Anal Biochem 354: 266273.
  • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 17921797.
  • Fellenstein J (1986) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783791.
  • Freitag TE & Prosser JI (2009) Correlation of methane production and functional gene transcriptional activity in a peat soil. Appl Environ Microbiol 75: 66796687.
  • Galtier N, Gouy M & Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543548.
  • Griffiths RI, Witheley AS, O'Donnell AG & Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA and rRNA-based microbial community composition. Appl Environ Microbiol 66: 54885491.
  • Hallam SJ, Girguis PR, Preston CM, Richardson PM & DeLong EF (2003) Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea. Appl Environ Microbiol 69: 54835491.
  • Intergovernmental Panel on Climate Change (IPCC) (1996) Climate Change 1995: The Science of Climate Change. Contribution of Working Group I to the Second Assessment Report of the Intergovernmental Panel on Climate Change (Houghton JT, Meiro Fihlo LG, Callander BA, Harris N, Kattenberg A & Maskell K, eds), pp. 540. Cambridge University Press, New York, NY.
  • Jukes TH & Cantor SR (1969) Evolution of protein molecules. Mammalian Protein Metabolism (Munro H, ed), pp. 81132. Academic Press, New York, NY.
  • Lehmacher A & Klenk HP (1994) Characterization and phylogeny of mcrII, a gene cluster encoding an isoenzyme of methyl coenzyme M reductase from hyperthermophilic Methanothermus fervidus. Mol Gen Genet 243: 198206.
  • Lettinga G (1995) Anaerobic digestion and wastewater treatment systems. Antonie Van Leewenhoek 67: 328.
  • Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 13631371.
  • Lueders T & Friedrich MW (2003) Evaluation of PCR amplification bias by terminal restriction length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl Environ Microbiol 69: 320326.
  • Lueders T, Chin KJ, Conrad R & Friedrich M (2001) Molecular analyses of methyl-coenzyme M reductase α-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage. Environ Microbiol 3: 194204.
  • Luton PE, Wayne JM, Sharp RJ & Riley PW (2002) The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiology 148: 35213530.
  • Mills DK, Fitzgerald K, Litchfield CD & Gillevet PM (2003) A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils. J Microbiol Methods 54: 5774.
  • Roy CS, Talbot G, Topp E, Beaulieu C, Palin MF & Massé DI (2009) Bacterial community dynamics in an anaerobic plug-flow type bioreactor treating swine manure. Water Res 43: 2132.
  • Schink B & Stams AJM (2006) Syntrophism among prokaryotes. The Prokaryotes, 3rd edn, Vol. 2 (Dworkin M, Falkow S, Rosenberg E, Schleifer KH & Stackebrandt E, eds), pp. 309335. Springer, New York, NY, USA.
  • Suzuki M, Rappé MS & Giovannoni SJ (1998) Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl Environ Microbiol 64: 45224529.
  • Talbot G, Topp E, Palin MF & Massé DI (2008) Evaluation of molecular methods used for establishing the interactions and functions of microorganisms in anaerobic bioreactors. Water Res 42: 513537.
  • Talbot G, Roy CS, Topp E, Beaulieu C, Palin MF & Massé DI (2009) Multivariate statistical analyses of rDNA and rRNA fingerprint data to differentiate microbial communities in swine manure. FEMS Microbiol Ecol 70: 540552.
  • Talbot G, Roy CS, Topp E, Kalmokoff ML, Brooks SPJ, Beaulieu C, Palin MF & Massé DI (2010) Spatial distribution of some microbial trophic groups in a plug-flow type anaerobic bioreactor treating swine manure. Water Sci Technol 61: 11471155.
  • Thauer RK (1998) Biochemistry of methanogenesis: a tribute to Marjory Stephenson: 1998 Marjory Stephenson Prize Lecture. Microbiology 144: 23772406.
  • Whitford MF, Teather RM & Forster RJ (2001) Phylogenetic analysis of methanogens from the bovine rumen. BMC Microbiol 1: 15.