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  • Adav SS, Ravindran A, Chao LT, Tan L, Singh S & Sze SK (2011) Proteomic analysis of pH and strains dependent protein secretion of Trichoderma reesei. J Proteome Res 10: 45794596.
  • Arvas M, Pakula T, Smit B, Rautio J, Koivistoinen H, Jouhten P, Lindfors E, Wiebe M, Penttilä M & Saloheimo M (2011) Correlation of gene expression and protein production rate – a system wide study. BMC Genomics 12: 616.
  • Benítez T, Rincón AM, Limón MC & Codón AC (2004) Biocontrol mechanisms of Trichoderma strains. Int Microbiol 7: 249260.
  • Burmester A, Shelest E, Glöckner G et al. (2011) Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi. Genome Biol 12: R7.
  • Chen LL, Liu LJ, Shi M, Song XY, Zheng CY, Chen XL & Zhang YZ (2009) Characterization and gene cloning of a novel serine protease with nematicidal activity from Trichoderma pseudokoningii SMF2. FEMS Microbiol Lett 299: 135142.
  • Cohen R, Suzuki MR & Hammel KE (2004) Differential stress-induced regulation of two quinone reductases in the brown rot basidiomycete Gloeophyllum trabeum. Appl Environ Microbiol 70: 324331.
  • Djonovic S, Vargas WA, Kolomiets MV, Horndeski M, Wiest A & Kenerley CM (2007) A proteinaceous elicitor Sm1 from the beneficial fungus Trichoderma virens is required for induced systemic resistance in maize. Plant Physiol 145: 885889.
  • Druzhinina IS, Komoń-Zelazowska M, Atanasova L, Seidl V & Kubicek CP (2010) Evolution and ecophysiology of the industrial producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a new sympatric agamospecies related to it. PLoS ONE 5: e9191.
  • Druzhinina IS, Seidl-Seiboth V, Herrera-Estrella A, Horwitz BA, Kenerley CM, Monte E, Mukherjee PK, Zeilinger S, Grigoriev IV & Kubicek CP (2011) Trichoderma: the genomics of opportunistic success. Nature Rev Microbiol 16: 749759.
  • Grigoriev IV, Nordberg H, Shabalov I et al. (2011) The genome portal of the Department of Energy Joint Genome Institute. Nucleic Acid Res 40: D2632.
  • Gruber S & Seidl-Seiboth V (2012) Self versus non-self: fungal cell wall degradation in Trichoderma. Microbiology 158: 2634.
  • Hammel KE & Cullen D (2008) Role of fungal peroxidases in biological ligninolysis. Curr Opin Plant Biol 11: 349355.
  • Harman GE (2011) Multifunctional fungal plant symbionts: new tools to enhance plant growth and productivity. New Phytol 189: 647649.
  • Harman GE, Howell CR, Viterbo A, Chet I & Lorito M (2004) Trichoderma species – opportunistic, avirulent plant symbionts. Nature Rev Microbiol 2: 4356.
  • Harris PV, Welner D, McFarland KC et al. (2010) Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family. Biochemistry 49: 33053316.
  • Herpoël-Gimbert I, Margeot A, Dolla A, Jan G, Mollé D, Lignon S, Mathis H, Sigoillot JC, Monot F & Asther M (2009) Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains. Biotechnol Biofuels 1: 18.
  • Ivanova C, Bååth JA, Seiboth B & Kubicek CP (2012) Lactose induces all genes related to plant biomass hydrolysis and corresponding mono- and oligosaccharide transporters in Trichoderma reesei. ECFG 11, book of abstracts, abstract 605. Marburg, Germany.
  • Jensen KA Jr, Houtman CJ, Ryan ZC & Hammel KE (2001) Pathways for extracellular Fenton chemistry in the brown rot basidiomycete Gloeophyllum trabeum. Appl Environ Microbiol 67: 27052711.
  • Joneson S, Stajich JE, Shiu SH & Rosenblum EB (2011) Genomic transition to pathogenicity in chytrid fungi. PLoS Pathog 7: e1002338.
  • Jun H, Kieselbach T & Jönsson LJ (2011) Enzyme production by filamentous fungi: analysis of the secretome of Trichoderma reesei grown on unconventional carbon source. Microb Cell Fact 10: 68.
  • Kelly SL, Lamb DC & Kelly DE (2006) Cytochrome P450 biodiversity and biotechnology. Biochem Soc Trans 34: 11591160.
  • Kersten P & Cullen D (2007) Extracellular oxidative systems of the lignin-degrading Basidiomycete Phanerochaete chrysosporium. Fungal Genet Biol 44: 7787.
  • Klein D & Eveleigh DE (1998) Ecology of Trichoderma. Trichoderma and Gliocladium, Vol. 1 (Kubicek CP & Harman GE, eds), pp. 5769. Taylor and Francis, London.
  • Kubicek CP (2012a) Systems biological approaches towards understanding cellulase production by Trichoderma reesei. J Biotechnol, in press.
  • Kubicek CP (2012b) Fungi and Lignocellulose Biomass. Wiley and Sons, Hoboken, NJ.
  • Kubicek CP, Baker S, Gamauf C, Kenerley CM & Druzhinina IS (2008) Purifying selection and birth-and-death evolution in the class II hydrophobin gene families of the ascomycete Trichoderma/Hypocrea. BMC Evol Biol 8: 4.
  • Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V et al. (2011) Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biol 12: R40.
  • Latgé JP (2007) The cell wall: a carbohydrate armor for the fungal cell. Mol Microbiol 66: 279290.
  • Martin F, Aerts A, Ahrén D et al. (2008) The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452: 8892.
  • Martinez D, Berka RM, Henrissat B et al. (2008) Genome sequence analysis of the cellulolytic fungus Trichoderma reesei (syn. Hypocrea jecorina) reveals a surprisingly limited inventory of carbohydrate active enzymes. Nat Biotechnol 26: 553560.
  • Martinez D, Challacombe J, Morgenstern I et al. (2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. P Natl Acad Sci USA 106: 19541959.
  • Micales JA & Highley TL (1991) Factors associated with decay capacity of the brown-rot fungus Postia placenta. Biodeterioration Research III (Llewllyn GG & O'Rear CE, eds), pp. 285302. Plenum, New York, NY.
  • Monod M (2008) Secreted proteases from dermatophytes. Mycopathologia 166: 285294.
  • Monod M, Capoccia S, Léchenne B, Zaugg C, Holdom M & Jousson, (2002) Secreted proteases from pathogenic fungi. Int J Med Microbiol 292: 405419.
  • Pérez A, Ramage G, Blanes R, Murgui A, Casanova M & Martínez JP (2011) Some biological features of Candida albicans mutants for genes coding fungal proteins containing the CFEM domain. FEMS Yeast Res 11: 273284.
  • Petersen TN, Brunak S, von Heijne G & Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 29: 785786.
  • Phillips CM, Beeson WT, Cate JH & Marletta MA (2011) Cellobiose dehydrogenase and a copper-dependent polysaccharide monooxygenase potentiate cellulose degradation by Neurospora crassa. ACS Chem Biol 6: 13991406.
  • Plett JM & Martin F (2012) Poplar root exudates contain compounds that induce the expression of MiSSP7 in Laccaria bicolor. Plant Signal Behav 7: 1215.
  • Plett JM, Kemppainen M, Kale SD, Kohler A, Legué V, Brun A, Tyler BM, Pardo AG & Martin F (2011) A secreted effector protein of Laccaria bicolor is required for symbiosis development. Curr Biol 21: 11971203.
  • Rawlings ND, Barrett AJ & Bateman A (2012) MEROPS: the database of proteolytic enzymes, their substrates and inhibitors. Nucleic Acids Res 40: D343D350.
  • Rep M (2005) Small proteins of plant-pathogenic fungi secreted during host colonization. FEMS Microbiol Lett 253: 1927.
  • Roelofs D, de Boer M, Agamennone V, Bouchier P, Legler J & van Straalen N (2012) Functional environmental genomics of a municipal landfill soil. Front Genet 3: 85.
  • Rossmann AY, Samuels GJ, Rogerson CT & Lowen R (1999) Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42: 183.
  • Schrank A & Vainstein MH (2010) Metarhizium anisopliae enzymes and toxins. Toxicon 56: 12671274.
  • Seidl V (2008) Chitinases of filamentous fungi: a large group of diverse proteins with multiple physiological functions. Fungal Biol Rev 22: 3642.
  • Seidl V, Marchetti M, Schandl R, Allmaier G & Kubicek CP (2006) Epl1, the major secreted protein of Hypocrea atroviridis on glucose, is a member of a strongly conserved protein family comprising plant defense response elicitors. FEBS J 273: 43464359.
  • Seidl V, Song LF, Lindquist EA et al. (2009) Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the close presence of a fungal prey. BMC Genomics 10: 567.
  • Seidl-Seiboth V, Gruber S, Sezerman U, Schwecke T, Albayrak A, Neuhof T, von öhren H, Baker SE & Kubicek CP (2011) Novel hydrophobins from Trichoderma define a new hydrophobin subclass: protein properties, evolution, regulation, and processing. J Mol Evol 72: 339351.
  • Selker EU (1990) Premeiotic instability of repeated sequences in Neurospora crassa. Annu Rev Genet 24: 579613.
  • Sharon E, Bar-Eyal M, Chet I, Herrera-Estrella A, Kleifeld O & Spiegel Y (2001) Biological control of the root-knot nematode Meloidogyne javanica by Trichoderma harzianum. Phytopathology 91: 687693.
  • Singh D, Kashyap A, Pandey RV & Saini KS (2011) Novel advances in cytochrome P450 research. Drug Discov Today 16: 793799.
  • Syed K & Yadav JS (2012) P450 monooxygenases (P450ome) of the model white rot fungus Phanerochaete chrysosporium. CRC Crit Rev Microbiol, doi:10.3109/1040841X.2012.682050.
  • Szakmary K, Wottawa A & Kubicek CP (1991) Origin of oxidized cellulose degradation products and mechanism of their promotion of cellobiohydrolase I biosynthesis in Trichoderma reesei. J Gen Microbiol 137: 28732878.
  • Tisch D, Kubicek CP & Schmoll M (2012) The phosducin-like protein PhLP1 impacts regulation of glycoside hydrolases and light response in Trichoderma reesei. BMC Genomics 12: 613.
  • Viterbo A & Chet I (2006) TasHyd1, a new hydrophobin gene from the biocontrol agent Trichoderma asperellum, is involved in plant root colonization. Mol Plant Pathol 7: 249258.