SEARCH

SEARCH BY CITATION

References

  • Alberto F, Bignon C, Sulzenbacher G, Henrissat B & Czjzek M (2004) The three-dimensional structure of invertase (beta-fructosidase) from Thermotoga maritima reveals a bimodular arrangement and an evolutionary relationship between retaining and inverting glycosidases. J Biol Chem 279: 1890318910.
  • Andersson U & Radstrom P (2002) Physiological function of the maltose operon regulator, MalR, in Lactococcus lactis. BMC Microbiol 2: 28.
  • Bakolitsa C, Schwarzenbacher R, McMullan D et al. (2004) Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-Å resolution reveals a new fold. Proteins 56: 607610.
  • Balk M, Weijma J & Stams AJ (2002) Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor. Int J Syst Evol Microbiol 52: 13611368.
  • Ballschmiter M, Futterer O & Liebl W (2006) Identification and characterization of a novel intracellular alkaline alpha-amylase from the hyperthermophilic bacterium Thermotoga maritima MSB8. Appl Environ Microbiol 72: 22062211.
  • Bandlish RK, Michael Hess J, Epting KL, Vieille C & Kelly RM (2002) Glucose-to-fructose conversion at high temperatures with xylose (glucose) isomerases from Streptomyces murinus and two hyperthermophilic Thermotoga species. Biotechnol Bioeng 80: 185194.
  • Banin E, Vasil ML & Greenberg EP (2005) Iron and Pseudomonas aeruginosa biofilm formation. Proc Natl Acad Sci USA 102: 1107611081.
  • Benson AK & Haldenwang WG (1993) The sigma B-dependent promoter of the Bacillus subtilis sigB operon is induced by heat shock. J Bacteriol 175: 19291935.
  • Bent CJ, Isaacs NW, Mitchell TJ & Riboldi-Tunnicliffe A (2004) Crystal structure of the response regulator 02 receiver domain, the essential YycF two-component system of Streptococcus pneumoniae in both complexed and native states. J Bacteriol 186: 28722879.
  • Berezina OV, Lunina NA, Zverlov VV, Naumov DG, Liebl W & Velikodvorskaia GA (2003) Thermotoga neapolitana gene clusters participating in degradation of starch and maltodextins: molecular structure of the locus. Mol Biol (Mosk) 37: 801809.
  • Bertini I, Cowan JA, Del Bianco C, Luchinat C & Mansy SS (2003) Thermotoga maritima IscU. Structural characterization and dynamics of a new class of metallochaperone. J Mol Biol 331: 907924.
  • Bibel M, Brettl C, Gosslar U, Kriegshauser G & Liebl W (1998) Isolation and analysis of genes for amylolytic enzymes of the hyperthermophilic bacterium Thermotoga maritima. FEMS Microbiol Lett 158: 915.
  • Bilwes AM, Quezada CM, Croal LR, Crane BR & Simon MI (2001) Nucleotide binding by the histidine kinase CheA. Nat Struct Biol 8: 353360.
  • Bonin I, Robelek R, Benecke H, Urlaub H, Bacher A, Richter G & Wahl MC (2004) Crystal structures of the antitermination factor NusB from Thermotoga maritima and implications for RNA binding. Biochem J 383: 419428.
  • Boraston AB, Warren RA & Kilburn DG (2001) beta-1,3-Glucan binding by a thermostable carbohydrate binding module from Thermotoga maritima. Biochemistry (Moscow) 40: 1467914685.
  • Brinen LS, Canaves JM, Dai X et al. (2003) Crystal structure of a zinc-containing glycerol dehydrogenase (TM0423) from Thermotoga maritima at 1.5 Å resolution. Proteins 50: 371374.
  • Bronnenmeier K, Kern A, Liebl W & Staudenbauer WL (1995) Purification of Thermotoga maritima enzymes for the degradation of cellulosic materials. Appl Environ Microbiol 61: 13991407.
  • Brown PN, Hill CP & Blair DF (2002) Crystal structure of the middle and C-terminal domains of the flagellar rotor protein FliG. EMBO J 21: 32253234.
  • Brown PN, Mathews MA, Joss LA, Hill CP & Blair DF (2005) Crystal structure of the flagellar rotor protein FliN from Thermotoga maritima. J Bacteriol 187: 28902902.
  • Brunker P, Altenbuchner J, Kulbe KD & Mattes R (1997) Cloning, nucleotide sequence and expression of a mannitol dehydrogenase gene from Pseudomonas fluorescens DSM 50106 in Escherichia coli. Biochim Biophys Acta 1351: 157167.
  • Burke J, Roujeinikova A, Baker PJ, Sedelnikova S, Raasch C, Liebl W & Rice DW (2000) Crystallization and preliminary X-ray crystallographic studies on maltosyltransferase from Thermotoga maritima. Acta Crystallogr D Biol Crystallogr 56: 10491050.
  • Canaves JM (2004) Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts. Proteins 56: 1927.
  • Chang AL, Tuckerman JR, Gonzalez G, Mayer R, Weinhouse H, Volman G, Amikam D, Benziman M & Gilles-Gonzalez MA (2001) Phosphodiesterase A1, a regulator of cellulose synthesis in Acetobacter xylinum, is a heme-based sensor. Biochemistry (Moscow) 40: 34203426.
  • Chhabra SR, Shockley KR, Ward DE & Kelly RM (2002) Regulation of endo-acting glycosyl hydrolases in the hyperthermophilic bacterium Thermotoga maritima grown on glucan- and mannan-based polysaccharides. Appl Environ Microbiol 68: 545554.
  • Chhabra SR, Shockley KR, Conners SB, Scott KL, Wolfinger RD & Kelly RM (2003) Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima. J Biol Chem 278: 75407552.
  • Christodoulou E, Rypniewski WR & Vorgias CR (2003) High-resolution X-ray structure of the DNA-binding protein HU from the hyper-thermophilic Thermotoga maritima and the determinants of its thermostability. Extremophiles 7: 111122.
  • Cole ST & Raibaud O (1986) The nucleotide sequence of the malT gene encoding the positive regulator of the Escherichia coli maltose regulon. Gene 42: 201208.
  • Columbus L, Peti W, Etezady-Esfarjani T, Herrmann T & Wuthrich K (2005) NMR structure determination of the conserved hypothetical protein TM1816 from Thermotoga maritima. Proteins 60: 552557.
  • Comfort DA, Chhabra SR, Conners SB, Chou C-J, Epting KL, Johnson MR, Jones KL, Sehgal AC & Kelly RM (2004) Strategic biocatalysis with hyperthermophilic enzymes. Green Chem 6: 459465.
  • Conners SB, Montero CI, Comfort DA, Shockley KR, Johnson MR, Chhabra SR & Kelly RM (2005) An expression-driven approach to the prediction of carbohydrate transport and utilization regulons in the hyperthermophilic bacterium Thermotoga maritima. J Bacteriol 187: 72677282.
  • Costerton JW, Lewandowski Z, Caldwell DE, Korber DR & Lappin-Scott HM (1995) Microbial biofilms. Annu Rev Microbiol 49: 711745.
  • Dams T, Auerbach G, Bader G, Jacob U, Ploom T, Huber R & Jaenicke R (2000) The crystal structure of dihydrofolate reductase from Thermotoga maritima: molecular features of thermostability. J Mol Biol 297: 659672.
  • DeBoy RT, Mongodin EF, Emerson JB & Nelson KE (2006) Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences. J Bacteriol 188: 23642374.
  • Dickmanns A, Ballschmiter M, Liebl W & Ficner R (2006) Structure of the novel alpha-amylase AmyC from Thermotoga maritima. Acta Crystallogr D Biol Crystallogr 62: 262270.
  • DiDonato M, Deacon AM, Klock HE, McMullan D & Lesley SA (2004) A scaleable and integrated crystallization pipeline applied to mining the Thermotoga maritima proteome. J Struct Funct Genomics 5: 133146.
  • Ding YR, Ronimus RS & Morgan HW (2001) Thermotoga maritima phosphofructokinases: expression and characterization of two unique enzymes. J Bacteriol 183: 791794.
  • Dorr C, Zaparty M, Tjaden B, Brinkmann H & Siebers B (2003) The hexokinase of the hyperthermophile Thermoproteus tenax. ATP-dependent hexokinases and ADP-dependent glucokinases, teo alternatives for glucose phosphorylation in Archaea. J Biol Chem 278: 1874418753.
  • Duffaud GD, McCutchen CM, Leduc P, Parker KN & Kelly RM (1997) Purification and characterization of extremely thermostable beta-mannanase, beta-mannosidase, and alpha-galactosidase from the hyperthermophilic eubacterium Thermotoga neapolitana 5068. Appl Environ Microbiol 63: 169177.
  • Eisen JA, Nelson KE, Paulsen IT et al. (2002) The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium. Proc Natl Acad Sci USA 99: 95099514.
  • Elferink MG, Albers SV, Konings WN & Driessen AJ (2001) Sugar transport in Sulfolobus solfataricus is mediated by two families of binding protein-dependent ABC transporters. Mol Microbiol 39: 14941503.
  • Erlandsen H, Canaves JM, Elsliger MA et al. (2004) Crystal structure of an HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 Å resolution. Proteins 54: 806809.
  • Etezady-Esfarjani T & Wuthrich K (2004) NMR assignment of TM1442, a putative anti-sigma factor antagonist from Thermotoga maritima. J Biomol NMR 29: 99100.
  • Etezady-Esfarjani T, Peti W & Wuthrich K (2003) NMR assignment of the conserved hypothetical protein TM1290 of Thermotoga maritima. J Biomol NMR 25: 167168.
  • Etezady-Esfarjani T, Herrmann T, Peti W, Klock HE, Lesley SA & Wuthrich K (2004) NMR structure determination of the hypothetical protein TM1290 from Thermotoga maritima using automated NOESY analysis. J Biomol NMR 29: 403406.
  • Fardeau ML, Ollivier B, Patel BK, Magot M, Thomas P, Rimbault A, Rocchiccioli F & Garcia JL (1997) Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well. Int J Syst Bacteriol 47: 10131019.
  • Fernandez FJ, Vega MC, Lehmann F, Sandmeier E, Gehring H, Christen P & Wilmanns M (2004) Structural studies of the catalytic reaction pathway of a hyperthermophilic histidinol-phosphate aminotransferase. J Biol Chem 279: 2147821488.
  • Fukami-Kobayashi K, Tateno Y & Nishikawa K (2003) Parallel evolution of ligand specificity between LacI/GalR family repressors and periplasmic sugar-binding proteins. Mol Biol Evol 20: 267277.
  • Galperin MY, Noll KM & Romano AH (1996) The glucose transport system of the hyperthermophilic anaerobic bacterium Thermotoga neapolitana. Appl Environ Microbiol 62: 29152918.
  • Galperin MY, Noll KM & Romano AH (1997) Coregulation of beta-galactoside uptake and hydrolysis by the hyperthermophilic bacterium Thermotoga neapolitana. Appl Environ Microbiol 63: 969972.
  • Gao J, Bauer MW, Shockley KR, Pysz MA & Kelly RM (2003) Growth of hyperthermophilic archaeon Pyrococcus furiosus on chitin involves two family 18 chitinases. Appl Environ Microbiol 69: 31193128.
  • Garcia B, Latasa C, Solano C, Garcia-del Portillo F, Gamazo C & Lasa I (2004) Role of the GGDEF protein family in Salmonella cellulose biosynthesis and biofilm formation. Mol Microbiol 54: 264277.
  • Gaspar JA, Liu C, Vassall KA et al. (2005) A novel member of the YchN-like fold: A novel member of the YchN-like fold: Solution structure of the hypothetical protein TM0979 from Thermotoga maritima. Protein Sci 14: 216223.
  • Goda SK, Eisa O, Akhter M & Minton NP (1998) Molecular analysis of the malR gene of Clostridium butyricum NCIMB 7423, a member of the LacI-GalR family of repressor proteins. FEMS Microbiol Lett 165: 193200.
  • Grossman AD, Erickson JW & Gross CA (1984) The htpR gene product of E. coli is a sigma factor for heat-shock promoters. Cell 38: 383390.
  • Gruyer S, Legin E, Bliard C, Ball S & Duchiron F (2002) The endopolysaccharide metabolism of the hyperthermophilic archeon Thermococcus hydrothermalis: polymer structure and biosynthesis. Curr Microbiol 44: 206211.
  • Guo RT, Kuo CJ, Chou CC, Ko TP, Shr HL, Liang PH & Wang AH (2004) Crystal structure of octaprenyl pyrophosphate synthase from hyperthermophilic Thermotoga maritima and mechanism of product chain length determination. J Biol Chem 279: 49034912.
  • Ha KS, Kwak JE, Han BW, Lee JY, Moon J, Lee BI & Suh SW (2001) Crystallization and preliminary X-ray crystallographic analysis of the TM1442 gene product from Thermotoga maritima, a homologue of Bacillus subtilis anti-anti-sigma factors. Acta Crystallogr D Biol Crystallogr 57: 276278.
  • Hansen T & Schonheit P (2003) ATP-dependent glucokinase from the hyperthermophilic bacterium Thermotoga maritima represents an extremely thermophilic ROK glucokinase with high substrate specificity. FEMS Microbiol Lett 226: 405411.
  • Hansen T, Reichstein B, Schmid R & Schonheit P (2002) The first archaeal ATP-dependent glucokinase, from the hyperthermophilic crenarchaeon Aeropyrum pernix, represents a monomeric, extremely thermophilic ROK glucokinase with broad hexose specificity. J Bacteriol 184: 59555965.
  • Harriott OT, Huber R, Stetter KO, Betts PW & Noll KM (1994) A cryptic miniplasmid from the hyperthermophilic bacterium Thermotoga sp. strain RQ7. J Bacteriol 176: 27592762.
  • Heine A, Canaves JM, Von Delft F et al. (2004) Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.8 Å resolution. Proteins 56: 387391.
  • Hettwer S & Sterner R (2002) A novel tryptophan synthase beta-subunit from the hyperthermophile Thermotoga maritima. Quaternary structure, steady-state kinetics, and putative physiological role. J Biol Chem 277: 81948201.
  • Homuth G, Mogk A & Schumann W (1999) Post-transcriptional regulation of the Bacillus subtilis dnaK operon. Mol Microbiol 32: 11831197.
  • Huber RW & Hannig M (2004) Thermotogales (DworkinMW, ed), Springer-Verlag, New York (http://link.springer-ny.com/link/service/books/10125/).
  • Huber R, Langworthy TA, Konig H, Thomm M, Woese CR, Sleytr UB & Stetter KO (1986) Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C. Arch Microbiol 144: 324333.
  • Hugouvieux-Cotte-Pattat N & Reverchon S (2001) Two transporters, TogT and TogMNAB, are responsible for oligogalacturonide uptake in Erwinia chrysanthemi 3937. Mol Microbiol 41: 11251132.
  • Hugouvieux-Cotte-Pattat N, Blot N & Reverchon S (2001) Identification of TogMNAB, an ABC transporter which mediates the uptake of pectic oligomers in Erwinia chrysanthemi 3937. Mol Microbiol 41: 11131123.
  • Ihsanawati Kumasaka T, Kaneko T, Morokuma C, Nakamura S & Tanaka N (2003) Crystallization and preliminary X-ray studies of xylanase 10B from Thermotoga maritima. Acta Crystallogr D Biol Crystallogr 59: 16591661.
  • Ilin S, Hoskins A, Ohlenschlager O, Jonker HR, Schwalbe H & Wohnert J (2005) Domain reorientation and induced fit upon RNA binding: solution structure and dynamics of ribosomal protein L11 from Thermotoga maritima. Chembiochem 6: 16111618.
  • Ishii R, Minagawa A, Takaku H, Takagi M, Nashimoto M & Yokoyama S (2005) Crystal structure of the tRNA 3′ processing endoribonuclease tRNase Z from Thermotoga maritima. J Biol Chem 280: 1413814144.
  • Jannasch HW, Huber R, Belkin S & Stetter KO (1988) Thermotoga neapolitana sp. nov. of the extremely thermophilic, eubacterial genus Thermotoga. Arch Microbiol 150: 103104.
  • Jansen R, Embden JD, Gaastra W & Schouls LM (2002) Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43: 15651575.
  • Jaroszewski L, Schwarzenbacher R, Von Delft F et al. (2004) Crystal structure of a novel manganese-containing cupin (TM1459) from Thermotoga maritima at 1.65 Å resolution. Proteins 56: 611614.
  • Jeanthon C, Reysenbach AL, L'Haridon S, Gambacorta A, Pace NR, Glenat P & Prieur D (1995) Thermotoga subterranea sp. nov., a new thermophilic bacterium isolated from a continental oil reservoir. Arch Microbiol 164: 9197.
  • Jiang Z, Zhu Y, Li L, Yu X, Kusakabe I, Kitaoka M & Hayashi K (2004) Transglycosylation reaction of xylanase B from the hyperthermophilic Thermotoga maritima with the ability of synthesis of tertiary alkyl beta-d-xylobiosides and xylosides. J Biotechnol 114: 125134.
  • Jiang ZQ, Li XT, Yang SQ, Li LT, Li Y & Feng WY (2006) Biobleach boosting effect of recombinant xylanase B from the hyperthermophilic Thermotoga maritima on wheat straw pulp. Appl Microbiol Biotechnol 70: 6571.
  • Johnson M, Cockayne A, Williams PH & Morrissey JA (2005a) Iron-responsive regulation of biofilm formation in Staphylococcus aureus involves Fur-dependent and Fur-independent mechanisms. J Bacteriol 187: 82118215.
  • Johnson MR, Montero CI, Conners SB, Shockley KR, Bridger SL & Kelly RM (2005b) Population density-dependent regulation of exopolysaccharide formation in the hyperthermophilic bacterium Thermotoga maritima. Mol Microbiol 55: 664674.
  • Johnson MR, Conners SB, Montero CI, Chou CJ, Shockley KR & Kelly RM (2006) The Thermotoga maritima phenotype is impacted by syntrophic interaction with Methanococcus jannaschii in hyperthermophilic coculture. Appl Environ Microbiol 72: 811818.
  • Kaiser JT, Clausen T, Bourenkow GP, Bartunik HD, Steinbacher S & Huber R (2000) Crystal structure of a NifS-like protein from Thermotoga maritima: implications for iron sulphur cluster assembly. J Mol Biol 297: 451464.
  • Kaplan JB, Ragunath C, Ramasubbu N & Fine DH (2003) Detachment of Actinobacillus actinomycetemcomitans biofilm cells by an endogenous beta-hexosaminidase activity. J Bacteriol 185: 46934698.
  • Karaolis DK, Rashid MH, Chythanya R, Luo W, Hyodo M & Hayakawa Y (2005) c-di-GMP (3′–5′-cyclic diguanylic acid) inhibits Staphylococcus aureus cell-cell interactions and biofilm formation. Antimicrob Agents Chemother 49: 10291038.
  • Kim BC, Lee YH, Lee HS, Lee DW, Choe EA & Pyun YR (2002) Cloning, expression and characterization of l-arabinose isomerase from Thermotoga neapolitana: bioconversion of d-galactose to d-tagatose using the enzyme. FEMS Microbiol Lett 212: 121126.
  • Kim MS, Shin J, Lee W, Lee HS & Oh BH (2003) Crystal structures of RbsD leading to the identification of cytoplasmic sugar-binding proteins with a novel folding architecture. J Biol Chem 278: 2817328180.
  • Kim CS, Ji ES & Oh DK (2004) Characterization of a thermostable recombinant beta-galactosidase from Thermotoga maritima. J Appl Microbiol 97: 10061014.
  • Kirillina O, Fetherston JD, Bobrov AG, Abney J & Perry RD (2004) HmsP, a putative phosphodiesterase, and HmsT, a putative diguanylate cyclase, control Hms-dependent biofilm formation in Yersinia pestis. Mol Microbiol 54: 7588.
  • Kittur FS, Mangala SL, Rus'd AA, Kitaoka M, Tsujibo H & Hayashi K (2003) Fusion of family 2b carbohydrate-binding module increases the catalytic activity of a xylanase from Thermotoga maritima to soluble xylan. FEBS Lett 549: 147151.
  • Kluskens LD, Van Alebeek GJ, Voragen AG, De Vos WM & Van Der Oost J (2003) Molecular and biochemical characterization of the thermoactive family 1 pectate lyase from the hyperthermophilic bacterium Thermotoga maritima. Biochem J 370: 651659.
  • Kluskens LD, Van Alebeek GJ, Walther J, Voragen AG, De Vos WM & Van Der Oost J (2005) Characterization and mode of action of an exopolygalacturonase from the hyperthermophilic bacterium Thermotoga maritima. FEBS J 272: 54645473.
  • Knochel T, Pappenberger A, Jansonius JN & Kirschner K (2002) The crystal structure of indoleglycerol-phosphate synthase from Thermotoga maritima. Kinetic stabilization by salt bridges. J Biol Chem 277: 86268634.
  • Koning SM, Elferink MG, Konings WN & Driessen AJ (2001) Cellobiose uptake in the hyperthermophilic archaeon Pyrococcus furiosus is mediated by an inducible, high-affinity ABC transporter. J Bacteriol 183: 49794984.
  • Korolev S, Ikeguchi Y, Skarina T, Beasley S, Arrowsmith C, Edwards A, Joachimiak A, Pegg AE & Savchenko A (2002) The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor. Nat Struct Biol 9: 2731.
  • Kriegshauser G & Liebl W (2000) Pullulanase from the hyperthermophilic bacterium Thermotoga maritima: purification by beta-cyclodextrin affinity chromatography. J Chromatogr B Biomed Sci Appl 737: 245251.
  • Kwakman JH & Postma PW (1994) Glucose kinase has a regulatory role in carbon catabolite repression in Streptomyces coelicolor. J Bacteriol 176: 26942698.
  • Kyrpides NC, Ouzounis CA, Iliopoulos I, Vonstein V & Overbeek R (2000) Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools. Nucleic Acids Res 28: 45734576.
  • Lammerts van Bueren A, Finn R, Ausio J & Boraston AB (2004) Alpha-glucan recognition by a new family of carbohydrate-binding modules found primarily in bacterial pathogens. Biochemistry (Mosc) 43: 1563315642.
  • Le Breton Y, Pichereau V, Sauvageot N, Auffray Y & Rince A (2005) Maltose utilization in Enterococcus faecalis. J Appl Microbiol 98: 806813.
  • Lee CA & Saier MH Jr (1983) Mannitol-specific enzyme II of the bacterial phosphotransferase system. III. The nucleotide sequence of the permease gene. J Biol Chem 258: 1076110767.
  • Lee JY, Kwak JE, Moon J, Eom SH, Liong EC, Pedelacq JD, Berendzen J & Suh SW (2001) Crystal structure and functional analysis of the SurE protein identify a novel phosphatase family. Nat Struct Biol 8: 789794.
  • Lee HS, Auh JH, Yoon HG et al. (2002a) Cooperative action of alpha-glucanotransferase and maltogenic amylase for an improved process of isomaltooligosaccharide (IMO) production. J Agric Food Chem 50: 28122817.
  • Lee MH, Kim YW, Kim TJ, Park CS, Kim JW, Moon TW & Park KH (2002b) A novel amylolytic enzyme from Thermotoga maritima, resembling cyclodextrinase and alpha-glucosidase, that liberates glucose from the reducing end of the substrates. Biochem Biophys Res Commun 295: 818825.
  • Lee SJ, Engelmann A, Horlacher R, Qu Q, Vierke G, Hebbeln C, Thomm M & Boos W (2003) TrmB, a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter from the hyperthermophilic archaeon Thermococcus litoralis. J Biol Chem 278: 983990.
  • Lee DW, Jang HJ, Choe EA, Kim BC, Lee SJ, Kim SB, Hong YH & Pyun YR (2004a) Characterization of a thermostable l-arabinose (d-galactose) isomerase from the hyperthermophilic eubacterium Thermotoga maritima. Appl Environ Microbiol 70: 13971404.
  • Lee HH, Kim do J, Ahn HJ, Ha JY & Suh SW (2004b) Crystal structure of T-protein of the glycine cleavage system. Cofactor binding, insights into H-protein recognition, and molecular basis for understanding nonketotic hyperglycinemia. J Biol Chem 279: 5051450523.
  • Lee JY, Ahn HJ, Ha KS & Suh SW (2004c) Crystal structure of the TM1442 protein from Thermotoga maritima, a homolog of the Bacillus subtilis general stress response anti-anti-sigma factor RsbV. Proteins 56: 176179.
  • Lee DW, Hong YH, Choe EA, Lee SJ, Kim SB, Lee HS, Oh JW, Shin HH & Pyun YR (2005a) A thermodynamic study of mesophilic, thermophilic, and hyperthermophilic l-arabinose isomerases: the effects of divalent metal ions on protein stability at elevated temperatures. FEBS Lett 579: 12611266.
  • Lee SJ, Moulakakis C, Koning SM, Hausner W, Thomm M & Boos W (2005b) TrmB, a sugar sensing regulator of ABC transporter genes in Pyrococcus furiosus exhibits dual promoter specificity and is controlled by different inducers. Mol Microbiol 57: 17971807.
  • Lesley SA, Kuhn P, Godzik A et al. (2002) Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci USA 99: 1166411669.
  • Levin I, Miller MD, Schwarzenbacher R et al. (2005) Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 Å resolution reveals a new fold. Proteins 59: 864868.
  • Li D, Park SH, Shim JH, Lee HS, Tang SY, Park CS & Park KH (2004) In vitro enzymatic modification of puerarin to puerarin glycosides by maltogenic amylase. Carbohydr Res 339: 27892797.
  • Liebl W, Feil R, Gabelsberger J, Kellermann J & Schleifer KH (1992) Purification and characterization of a novel thermostable 4-alpha-glucanotransferase of Thermotoga maritima cloned in Escherichia coli. Eur J Biochem 207: 8188.
  • Liebl W, Gabelsberger J & Schleifer KH (1994) Comparative amino acid sequence analysis of Thermotoga maritima beta-glucosidase (BglA) deduced from the nucleotide sequence of the gene indicates distant relationship between beta-glucosidases of the BGA family and other families of beta-1,4-glycosyl hydrolases. Mol Gen Genet 242: 111115.
  • Liebl W, Ruile P, Bronnenmeier K, Riedel K, Lottspeich F & Greif I (1996) Analysis of a Thermotoga maritima DNA fragment encoding two similar thermostable cellulases, CelA and CelB, and characterization of the recombinant enzymes. Microbiology 142: 25332542.
  • Liebl W, Stemplinger I & Ruile P (1997) Properties and gene structure of the Thermotoga maritima alpha-amylase AmyA, a putative lipoprotein of a hyperthermophilic bacterium. J Bacteriol 179: 941948.
  • Liebl W, Brem D & Gotschlich A (1998a) Analysis of the gene for beta-fructosidase (invertase, inulinase) of the hyperthermophilic bacterium Thermotoga maritima, and characterisation of the enzyme expressed in Escherichia coli. Appl Microbiol Biotechnol 50: 5564.
  • Liebl W, Wagner B & Schellhase J (1998b) Properties of an alpha-galactosidase, and structure of its gene galA, within an alpha-and beta-galactoside utilization gene cluster of the hyperthermophilic bacterium Thermotoga maritima. Syst Appl Microbiol 21: 111.
  • Lim WJ, Park SR, An CL, Lee JY, Hong SY, Shin EC, Kim EJ, Kim JO, Kim H & Yun HD (2003) Cloning and characterization of a thermostable intracellular alpha-amylase gene from the hyperthermophilic bacterium Thermotoga maritima MSB8. Res Microbiol 154: 681687.
  • Liu J, Huang C, Shin DH, Yokota H, Jancarik J, Kim JS, Adams PD, Kim R & Kim SH (2005a) Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: structural insight into DNA binding and dimerization. J Mol Biol 350: 987996.
  • Liu J, Lou Y, Yokota H, Adams PD, Kim R & Kim SH (2005b) Crystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters. J Biol Chem 280: 1596015966.
  • Liu S, Saha B & Cotta M (2005c) Cloning, expression, purification, and analysis of mannitol dehydrogenase gene mtlK from Lactobacillus brevis. Appl Biochem Biotechnol 121–124: 391401.
  • Lloyd SA, Whitby FG, Blair DF & Hill CP (1999) Structure of the C-terminal domain of FliG, a component of the rotor in the bacterial flagellar motor. Nature 400: 472475.
  • Lodge JA, Maier T, Liebl W, Hoffmann V & Strater N (2003) Crystal structure of Thermotoga maritima alpha-glucosidase AglA defines a new clan of NAD+-dependent glycosidases. J Biol Chem 278: 1915119158.
  • Lyon GJ & Novick RP (2004) Peptide signaling in Staphylococcus aureus and other Gram-positive bacteria. Peptides 25: 13891403.
  • Maes D, Zeelen JP, Thanki N et al. (1999) The crystal structure of triosephosphate isomerase (TIM) from Thermotoga maritima: a comparative thermostability structural analysis of ten different TIM structures. Proteins 37: 441453.
  • Makarova KS, Aravind L, Grishin NV, Rogozin IB & Koonin EV (2002) A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res 30: 482496.
  • Mansy SS, Wu SP & Cowan JA (2004) Iron–sulfur cluster biosynthesis: biochemical characterization of the conformational dynamics of Thermotoga maritima IscU and the relevance for cellular cluster assembly. J Biol Chem 279: 1046910475.
  • Martins LO, Carreto LS, Da Costa MS & Santos H (1996) New compatible solutes related to Di-myo-inositol-phosphate in members of the order Thermotogales. J Bacteriol 178: 56445651.
  • Masse E, Vanderpool CK & Gottesman S (2005) Effect of RyhB small RNA on global iron use in Escherichia coli. J Bacteriol 187: 69626971.
  • Mathews I, Schwarzenbacher R, McMullan D et al. (2005) Crystal structure of S-adenosylmethionine: tRNA ribosyltransferase-isomerase (QueA) from Thermotoga maritima at 2.0 Å resolution reveals a new fold. Proteins 59: 869874.
  • McCarthy JK, Uzelac A, Davis DF & Eveleigh DE (2004) Improved catalytic efficiency and active site modification of 1,4-beta-d-glucan glucohydrolase A from Thermotoga neapolitana by directed evolution. J Biol Chem 279: 1149511502.
  • McDonough MA, Ryttersgaard C, Bjornvad ME, Lo Leggio L, Schulein M, Schroder Glad SO & Larsen S (2002) Crystallization and preliminary X-ray characterization of a thermostable pectate lyase from Thermotoga maritima. Acta Crystallogr D Biol Crystallogr 58: 709711.
  • McMullan D, Schwarzenbacher R, Jaroszewski L et al. (2004) Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 Å resolution. Proteins 56: 615618.
  • Meissner H & Liebl W (1998) Thermotoga maritima maltosyltransferase, a novel type of maltodextrin glycosyltransferase acting on starch and malto-oligosaccharides. Eur J Biochem 258: 10501058.
  • Meissner K, Wassenberg D & Liebl W (2000) The thermostabilizing domain of the modular xylanase XynA of Thermotoga maritima represents a novel type of binding domain with affinity for soluble xylan and mixed-linkage beta-1,3/beta-1, 4-glucan. Mol Microbiol 36: 898912.
  • Mekjian KR, Bryan EM, Beall BW & Moran CP Jr (1999) Regulation of hexuronate utilization in Bacillus subtilis. J Bacteriol 181: 426433.
  • Mey AR, Craig SA & Payne SM (2005) Characterization of Vibrio cholerae RyhB: the RyhB regulon and role of RyhB in biofilm formation. Infect Immun 73: 57065719.
  • Miller DJ, Ouellette N, Evdokimova E, Savchenko A, Edwards A & Anderson WF (2003) Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain. Protein Sci 12: 14321442.
  • Miller MD, Schwarzenbacher R, Von Delft F et al. (2004) Crystal structure of a tandem cystathionine-beta-synthase (CBS) domain protein (TM0935) from Thermotoga maritima at 1.87 Å resolution. Proteins 57: 213217.
  • Miyazaki K (2005) Hyperthermophilic alpha-l-arabinofuranosidase from Thermotoga maritima MSB8: molecular cloning, gene expression, and characterization of the recombinant protein. Extremophiles 9: 399406.
  • Mogk A, Homuth G, Scholz C, Kim L, Schmid FX & Schumann W (1997) The GroE chaperonin machine is a major modulator of the CIRCE heat shock regulon of Bacillus subtilis. EMBO J 16: 45794590.
  • Mojica FJ, Diez-Villasenor C, Soria E & Juez G (2000) Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria. Mol Microbiol 36: 244246.
  • Mojica FJ, Diez-Villasenor C, Garcia-Martinez J & Soria E (2005) Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J Mol Evol 60: 174182.
  • Mongodin EF, Hance IR, Deboy RT, Gill SR, Daugherty S, Huber R, Fraser CM, Stetter K & Nelson KE (2005) Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species. J Bacteriol 187: 49354944.
  • Muralidharan V, Rinker KD, Hirsh IS, Bouwer EJ & Kelly RM (1997) Hydrogen transfer between methanogens and fermentative heterotrophs in hyperthermophilic cocultures. Biotechnol Bioeng 56: 268278.
  • Musk DJ, Banko DA & Hergenrother PJ (2005) Iron salts perturb biofilm formation and disrupt existing biofilms of Pseudomonas aeruginosa. Chem Biol 12: 789796.
  • Nakajima M, Imamura H, Shoun H & Wakagi T (2003) Unique metal dependency of cytosolic alpha-mannosidase from Thermotoga maritima, a hyperthermophilic bacterium. Arch Biochem Biophys 415: 8793.
  • Nakajima M, Fushinobu S, Imamura H, Shoun H & Wakagi T (2006) Crystallization and preliminary X-ray analysis of cytosolic alpha-mannosidase from Thermotoga maritima. Acta Crystallograph Sect F Struct Biol Cryst Commun 62: 104105.
  • Nanavati D, Noll KM & Romano AH (2002) Periplasmic maltose- and glucose-binding protein activities in cell-free extracts of Thermotoga maritima. Microbiology 148: 35313537.
  • Nanavati DM, Nguyen TN & Noll KM (2005) Substrate specificities and expression patterns reflect the evolutionary divergence of maltose ABC transporters in Thermotoga maritima. J Bacteriol 187: 20022009.
  • Nanavati DM, Thirangoon K & Noll KM (2006) Several archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars. Appl Environ Microbiol 72: 13361345.
  • Nasser W, Reverchon S & Robert-Baudouy J (1992) Purification and functional characterization of the KdgR protein, a major repressor of pectinolysis genes of Erwinia chrysanthemi. Mol Microbiol 6: 257265.
  • Nelson KE, Clayton RA, Gill SR et al. (1999) Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature 399: 323329.
  • Nesbo CL & Doolittle WF (2003) Targeting clusters of transferred genes in Thermotoga maritima. Environ Microbiol 5: 11441154.
  • Nesbo CL, L'Haridon S, Stetter KO & Doolittle WF (2001) Phylogenetic analyses of two “archaeal” genes in Thermotoga maritima reveal multiple transfers between archaea and bacteria. Mol Biol Evol 18: 362375.
  • Nesbo CL, Nelson KE & Doolittle WF (2002) Suppressive subtractive hybridization detects extensive genomic diversity in Thermotoga maritima. J Bacteriol 184: 44754488.
  • Nesbo CL, Dlutek M & Doolittle WF (2006) Recombination in Thermotoga: implications for species concepts and biogeography. Genetics 172: 759769.
  • Nguyen TN, Ejaz AD, Brancieri MA, Mikula AM, Nelson KE, Gill SR & Noll KM (2004) Whole-genome expression profiling of Thermotoga maritima in response to growth on sugars in a chemostat. J Bacteriol 186: 48244828.
  • Nieto C, Espinosa M & Puyet A (1997) The maltose/maltodextrin regulon of Streptococcus pneumoniae Differential promoter regulation by the transcriptional repressor MalR. J Biol Chem 272: 3086030865.
  • Noll KM & Vargas M (1997) Recent advances in genetic analyses of hyperthermophilic archaea and bacteria. Arch Microbiol 168: 7380.
  • Page R, Nelson MS, Von Delft F et al. (2004) Crystal structure of gamma-glutamyl phosphate reductase (TM0293) from Thermotoga maritima at 2.0 Å resolution. Proteins 54: 157161.
  • Palm D, Goerl R, Weidinger G, Zeier R, Fischer B & Schinzel R (1987) E. coli maltodextrin phosphorylase: primary structure and deletion mapping of the C-terminal site. Z Naturforsch [C] 42: 394400.
  • Pan G, Menon AL & Adams MW (2003) Characterization of a [2Fe–2S] protein encoded in the iron-hydrogenase operon of Thermotoga maritima. J Biol Inorg Chem 8: 469474.
  • Parisot J, Ghochikyan A, Langlois V, Sakanyan V & Rabiller C (2002) Exopolygalacturonate lyase from Thermotoga maritima: cloning, characterization and organic synthesis application. Carbohydr Res 337: 14271433.
  • Parisot J, Langlois V, Sakanyan V & Rabiller C (2003) Cloning expression and characterization of a thermostable exopolygalacturonase from Thermotoga maritima. Carbohydr Res 338: 13331337.
  • Park SY, Beel BD, Simon MI, Bilwes AM & Crane BR (2004a) In different organisms, the mode of interaction between two signaling proteins is not necessarily conserved. Proc Natl Acad Sci USA 101: 1164611651.
  • Park F, Gajiwala K, Noland B et al. (2004b) The 1.59 Å resolution crystal structure of TM0096, a flavin mononucleotide binding protein from Thermotoga maritima. Proteins 55: 772774.
  • Park SY, Quezada CM, Bilwes AM & Crane BR (2004c) Subunit exchange by CheA histidine kinases from the mesophile Escherichia coli and the thermophile Thermotoga maritima. Biochemistry (Moscow) 43: 22282240.
  • Parker KN, Chhabra SR, Lam D, Callen W, Duffaud GD, Snead MA, Short JM, Mathur EJ & Kelly RM (2001) Galactomannanases Man2 and Man5 from Thermotoga species: growth physiology on galactomannans, gene sequence analysis, and biochemical properties of recombinant enzymes. Biotechnol Bioeng 75: 322333.
  • Penhoat CH, Li Z, Atreya HS, Kim S, Yee A, Xiao R, Murray D, Arrowsmith CH & Szyperski T (2005) NMR solution structure of Thermotoga maritima protein TM1509 reveals a Zn-metalloprotease-like tertiary structure. J Struct Funct Genomics 6: 5162.
  • Peti W, Norcross J, Eldridge G & O'Neil-Johnson M (2004) Biomolecular NMR using a microcoil NMR probe – new technique for the chemical shift assignment of aromatic side chains in proteins. J Am Chem Soc 126: 58735878.
  • Phadtare S, Hwang J, Severinov K & Inouye M (2003) CspB and CspL, thermostable cold-shock proteins from Thermotoga maritima. Genes Cells 8: 801810.
  • Pierrel F, Hernandez HL, Johnson MK, Fontecave M & Atta M (2003) MiaB protein from Thermotoga maritima. Characterization of an extremely thermophilic tRNA-methylthiotransferase. J Biol Chem 278: 2951529524.
  • Portalier R, Robert-Baudouy J & Stoeber F (1980) Regulation of Escherichia coli K-12 hexuronate system genes: exu regulon. J Bacteriol 143: 10951107.
  • Pourcel C, Salvignol G & Vergnaud G (2005) CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151: 653663.
  • Pridmore RD, Berger B, Desiere F et al. (2004) The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533. Proc Natl Acad Sci USA 101: 25122517.
  • Pugsley AP & Dubreuil C (1988) Molecular characterization of malQ, the structural gene for the Escherichia coli enzyme amylomaltase. Mol Microbiol 2: 473479.
  • Pujic P, Dervyn R, Sorokin A & Ehrlich SD (1998) The kdgRKAT operon of Bacillus subtilis: detection of the transcript and regulation by the kdgR and ccpA genes. Microbiology 144: 31113118.
  • Putnam CD, Clancy SB, Tsuruta H, Gonzalez S, Wetmur JG & Tainer JA (2001) Structure and mechanism of the RuvB Holliday junction branch migration motor. J Mol Biol 311: 297310.
  • Pysz MA, Conners SB, Montero CI, Shockley KR, Johnson MR, Ward DE & Kelly RM (2004a) Transcriptional analysis of biofilm formation processes in the anaerobic, hyperthermophilic bacterium Thermotoga maritima. Appl Environ Microbiol 70: 60986112.
  • Pysz MA, Ward DE, Shockley KR, Montero CI, Conners SB, Johnson MR & Kelly RM (2004b) Transcriptional analysis of dynamic heat-shock response by the hyperthermophilic bacterium Thermotoga maritima. Extremophiles 8: 209217.
  • Quezada CM, Gradinaru C, Simon MI, Bilwes AM & Crane BR (2004) Helical shifts generate two distinct conformers in the atomic resolution structure of the CheA phosphotransferase domain from Thermotoga maritima. J Mol Biol 341: 12831294.
  • Raasch C, Streit W, Schanzer J, Bibel M, Gosslar U & Liebl W (2000) Thermotoga maritima AglA, an extremely thermostable NAD+-, Mn2+-, and thiol-dependent alpha-glucosidase. Extremophiles 4: 189200.
  • Raasch C, Armbrecht M, Streit W, Hocker B, Strater N & Liebl W (2002) Identification of residues important for NAD+binding by the Thermotoga maritima alpha-glucosidase AglA, a member of glycoside hydrolase family 4. FEBS Lett 517: 267271.
  • Rajashekhara E, Kitaoka M, Kim YK & Hayashi K (2002) Characterization of a cellobiose phosphorylase from a hyperthermophilic eubacterium, Thermotoga maritima MSB8. Biosci Biotechnol Biochem 66: 25782586.
  • Rangachari K, Davis CT, Eccleston JF, Hirst EM, Saldanha JW, Strath M & Wilson RJ (2002) SufC hydrolyzes ATP and interacts with SufB from Thermotoga maritima. FEBS Lett 514: 225228.
  • Ravot G, Magot M, Fardeau ML, Patel BK, Prensier G, Egan A, Garcia JL & Ollivier B (1995) Thermotoga elfii sp. nov., a novel thermophilic bacterium from an African oil-producing well. Int J Syst Bacteriol 45: 308314.
  • Reidl J, Romisch K, Ehrmann M & Boos W (1989) MalI, a novel protein involved in regulation of the maltose system of Escherichia coli, is highly homologous to the repressor proteins GalR, CytR, and LacI. J Bacteriol 171: 48884899.
  • Reverchon S, Nasser W & Robert-Baudouy J (1991) Characterization of kdgR, a gene of Erwinia chrysanthemi that regulates pectin degradation. Mol Microbiol 5: 22032216.
  • Richardson JS, Hynes MF & Oresnik IJ (2004) A genetic locus necessary for rhamnose uptake and catabolism in Rhizobium leguminosarum bv. trifolli. J Bacteriol 186: 84338442.
  • Rife C, Schwarzenbacher R, McMullan D et al. (2005) Crystal structure of a putative modulator of DNA gyrase (pmbA) from Thermotoga maritima at 1.95 Å resolution reveals a new fold. Proteins 61: 444448.
  • Rinker KD, Han CJ & Kelly RM (1999) Continuous culture as a tool for investigating the growth physiology of heterotrophic hyperthermophiles and extreme thermoacidophiles. J Appl Microbiol 85: 118127.
  • Rivolta C, Soldo B, Lazarevic V, Joris B, Mauel C & Karamata D (1998) A 35.7 kb DNA fragment from the Bacillus subtilis chromosome containing a putative 12.3 kb operon involved in hexuronate catabolism and a perfectly symmetrical hypothetical catabolite-responsive element. Microbiology 144: 877884.
  • Robinson VL, Wu T & Stock AM (2003) Structural analysis of the domain interface in DrrB, a response regulator of the OmpR/PhoB subfamily. J Bacteriol 185: 41864194.
  • Robinson-Rechavi M & Godzik A (2005) Structural genomics of Thermotoga maritima proteins shows that contact order is a major determinant of protein thermostability. Structure (Cambridge) 13: 857860.
  • Roujeinikova A, Raasch C, Burke J, Baker PJ, Liebl W & Rice DW (2001a) The crystal structure of Thermotoga maritima maltosyltransferase and its implications for the molecular basis of the novel transfer specificity. J Mol Biol 312: 119131.
  • Roujeinikova A, Raasch C, Sedelnikova S, Liebl W & Rice DW (2001b) Crystallization and preliminary X-ray crystallographic studies on 4-alpha-glucanotransferase from Thermotoga maritima. Acta Crystallogr D Biol Crystallogr 57: 10461047.
  • Roujeinikova A, Raasch C, Sedelnikova S, Liebl W & Rice DW (2002) Crystal structure of Thermotoga maritima 4-alpha-glucanotransferase and its acarbose complex: implications for substrate specificity and catalysis. J Mol Biol 321: 149162.
  • Rubach JK, Brazzolotto X, Gaillard J & Fontecave M (2005) Biochemical characterization of the HydE and HydG iron-only hydrogenase maturation enzymes from Thermatoga maritima. FEBS Lett 579: 50555060.
  • Ruttersmith LD & Daniel RM (1993) Thermostable beta-glucosidase and beta-xylosidase from Thermotoga sp. strain FjSS3-B.1. Biochim Biophys Acta 1156: 167172.
  • Ryjenkov DA, Tarutina M, Moskvin OV & Gomelsky M (2005) Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain. J Bacteriol 187: 17921798.
  • Saha BC (2004) Purification and characterization of a novel mannitol dehydrogenase from Lactobacillus intermedius. Biotechnol Prog 20: 537542.
  • Salleh HM, Mullegger J, Reid SP, Chan WY, Hwang J, Warren RA & Withers SG (2006) Cloning and characterization of Thermotoga maritima beta-glucuronidase. Carbohydr Res 341: 4959.
  • Santelli E, Schwarzenbacher R, McMullan D et al. (2004) Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 Å resolution. Proteins 56: 167170.
  • Sasaki Y, Laivenieks M & Zeikus JG (2005) Lactobacillus reuteri ATCC 53608 mdh gene cloning and recombinant mannitol dehydrogenase characterization. Appl Microbiol Biotechnol 68: 3641.
  • Saul DJ, Williams LC, Reeves RA, Gibbs MD & Bergquist PL (1995) Sequence and expression of a xylanase gene from the hyperthermophile Thermotoga sp. strain FjSS3-B.1 and characterization of the recombinant enzyme and its activity on kraft pulp. Appl Environ Microbiol 61: 41104113.
  • Savchenko A, Skarina T, Evdokimova E, Watson JD, Laskowski R, Arrowsmith CH, Edwards AM, Joachimiak A & Zhang RG (2004) X-ray crystal structure of CutA from Thermotoga maritima at 1.4 Å resolution. Proteins 54: 162165.
  • Schembri MA, Kjaergaard K & Klemm P (2003) Global gene expression in Escherichia coli biofilms. Mol Microbiol 48: 253267.
  • Schlosser A, Kampers T & Schrempf H (1997) The Streptomyces ATP-binding component MsiK assists in cellobiose and maltose transport. J Bacteriol 179: 20922095.
  • Schneider E (2001) ABC transporters catalyzing carbohydrate uptake. Res Microbiol 152: 303310.
  • Schouls LM, Reulen S, Duim B, Wagenaar JA, Willems RJ, Dingle KE, Colles FM & Van Embden JD (2003) Comparative genotyping of Campylobacter jejuni by amplified fragment length polymorphism, multilocus sequence typing, and short repeat sequencing: strain diversity, host range, and recombination. J Clin Microbiol 41: 1526.
  • Schulze-Gahmen U, Pelaschier J, Yokota H, Kim R & Kim SH (2003) Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein. Proteins 50: 526530.
  • Schumann J, Wrba A, Jaenicke R & Stetter KO (1991) Topographical and enzymatic characterization of amylases from the extremely thermophilic eubacterium Thermotoga maritima. FEBS Lett 282: 122126.
  • Schwarzenbacher R, Canaves JM, Brinen LS et al. (2003) Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution. Proteins 53: 142145.
  • Scwarzenbacher R, Deacon AM, Jaroszewski L et al. (2004a) Crystal structure of a putative glutamine amido transferase (TM1158) from Thermotoga maritima at 1.7 A resolution. Proteins 54: 801805.
  • Schwarzenbacher R, Jaroszewski L, Von Delft F et al. (2004b) Crystal structure of a phosphoribosylaminoimidazole mutase PurE (TM0446) from Thermotoga maritima at 1.77-A resolution. Proteins 55: 474478.
  • Schwarzenbacher R, Jaroszewski L, Von Delft F et al. (2004c) Crystal structure of an aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 A resolution. Proteins 55: 759763.
  • Schwarzenbacher R, Jaroszewski L, Von Delft F et al. (2004d) Crystal structure of a type II quinolic acid phosphoribosyltransferase (TM1645) from Thermotoga maritima at 2.50 A resolution. Proteins 55: 768771.
  • Schwarzenbacher R, Von Delft F, Abdubek P et al. (2004e) Crystal structure of a putative PII-like signaling protein (TM0021) from Thermotoga maritima at 2.5 A resolution. Proteins 54: 810813.
  • Schwarzenbacher R, Von Delft F, Canaves JM et al. (2004f) Crystal structure of an iron-containing 1,3-propanediol dehydrogenase (TM0920) from Thermotoga maritima at 1.3 A resolution. Proteins 54: 174177.
  • Schwarzenbacher R, Von Delft F, Jaroszewski L et al. (2004g) Crystal structure of a putative oxalate decarboxylase (TM1287) from Thermotoga maritima at 1.95 A resolution. Proteins 56: 392395.
  • Selig M, Xavier KB, Santos H & Schonheit P (1997) Comparative analysis of Embden–Meyerhof and Entner–Doudoroff glycolytic pathways in hyperthermophilic archaea and the bacterium Thermotoga. Arch Microbiol 167: 217232.
  • Selmer M, Al-Karadaghi S, Hirokawa G, Kaji A & Liljas A (1999a) Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic. Science 286: 23492352.
  • Selmer M, Al-Karadaghi S, Hirokawa G, Kaji A & Liljas A (1999b) Crystallization and preliminary X-ray analysis of Thermotoga maritima ribosome recycling factor. Acta Crystallogr D Biol Crystallogr 55: 20492050.
  • Shin DH, Nguyen HH, Jancarik J, Yokota H, Kim R & Kim SH (2003a) Crystal structure of NusA from Thermotoga maritima and functional implication of the N-terminal domain. Biochemistry (Moscow) 42: 1342913437.
  • Shin DH, Roberts A, Jancarik J, Yokota H, Kim R, Wemmer DE & Kim SH (2003b) Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima. Protein Sci 12: 14641472.
  • Shin DH, Brandsen J, Jancarik J, Yokota H, Kim R & Kim SH (2004a) Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome. J Mol Biol 341: 227239.
  • Shin DH, Lou Y, Jancarik J, Yokota H, Kim R & Kim SH (2004b) Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain. Proc Natl Acad Sci USA 101: 1319813203.
  • Shin DH, Lou Y, Jancarik J, Yokota H, Kim R & Kim SH (2005) Crystal structure of TM1457 from Thermotoga maritima. J Struct Biol 152: 113117.
  • Shockley KR, Scott KL, Pysz MA, Conners SB, Johnson MR, Montero CI, Wolfinger RD & Kelly RM (2005) Genome-wide transcriptional variation within and between steady states for continuous growth of the hyperthermophile Thermotoga maritima. Appl Environ Microbiol 71: 55725576.
  • Shumilin IA, Bauerle R, Wu J, Woodard RW & Kretsinger RH (2004) Crystal structure of the reaction complex of 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase from Thermotoga maritima refines the catalytic mechanism and indicates a new mechanism of allosteric regulation. J Mol Biol 341: 455466.
  • Simpson HD, Haufler UR & Daniel RM (1991) An extremely thermostable xylanase from the thermophilic eubacterium Thermotoga. Biochem J 277: 413417.
  • Skinner MM, Puvathingal JM, Walter RL & Friedman AM (2000) Crystal structure of protein isoaspartyl methyltransferase: a catalyst for protein repair. Structure Fold Des 8: 11891201.
  • Snel B, Lehmann G, Bork P & Huynen MA (2000) STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res 28: 34423444.
  • Song HK, Bochtler M, Azim MK, Hartmann C, Huber R & Ramachandran R (2003) Isolation and characterization of the prokaryotic proteasome homolog HslVU (ClpQY) from Thermotoga maritima and the crystal structure of HslV. Biophys Chem 100: 437452.
  • Spraggon G, Pantazatos D, Klock HE, Wilson IA, Woods VL Jr & Lesley SA (2004a) On the use of DXMS to produce more crystallizable proteins: structures of the T. maritima proteins TM0160 and TM1171. Protein Sci 13: 31873199.
  • Spraggon G, Schwarzenbacher R, Kreusch A et al. (2004b) Crystal structure of an Udp-N-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 Å resolution. Proteins 55: 10781081.
  • Spraggon G, Schwarzenbacher R, Kreusch A et al. (2004c) Crystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 Å resolution. Proteins 56: 396400.
  • Sriprapundh D, Vieille C & Zeikus JG (2000) Molecular determinants of xylose isomerase thermal stability and activity: analysis of thermozymes by site-directed mutagenesis. Protein Eng 13: 259265.
  • Sriprapundh D, Vieille C & Zeikus JG (2003) Directed evolution of Thermotoga neapolitana xylose isomerase: high activity on glucose at low temperature and low pH. Protein Eng 16: 683690.
  • Stoodley P, Sauer K, Davies DG & Costerton JW (2002) Biofilms as complex differentiated communities. Annu Rev Microbiol 56: 187209.
  • Stoop JM & Pharr DM (1992) Partial purification and characterization of mannitol: mannose 1-oxidoreductase from celeriac (Apium graveolens var. rapaceum) roots. Arch Biochem Biophys 298: 612619.
  • Sulzenbacher G, Bignon C, Nishimura T, Tarling CA, Withers SG, Henrissat B & Bourne Y (2004) Crystal structure of Thermotoga maritima alpha-l-fucosidase. Insights into the catalytic mechanism and the molecular basis for fucosidosis. J Biol Chem 279: 1311913128.
  • Suresh C, Rus'd AA, Kitaoka M & Hayashi K (2002) Evidence that the putative alpha-glucosidase of Thermotoga maritima MSB8 is a pNP alpha-d-glucuronopyranoside hydrolyzing alpha-glucuronidase. FEBS Lett 517: 159162.
  • Suresh C, Kitaoka M & Hayashi K (2003) A thermostable non-xylanolytic alpha-glucuronidase of Thermotoga maritima MSB8. Biosci Biotechnol Biochem 67: 23592364.
  • Susin MF, Perez HR, Baldini RL & Gomes SL (2004) Functional and structural analysis of HrcA repressor protein from Caulobacter crescentus. J Bacteriol 186: 67596767.
  • Svensater G, Welin J, Wilkins JC, Beighton D & Hamilton IR (2001) Protein expression by planktonic and biofilm cells of Streptococcus mutans. FEMS Microbiol Lett 205: 139146.
  • Takahata Y, Nishijima M, Hoaki T & Maruyama T (2001) Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan. Int J Syst Evol Microbiol 51: 19011909.
  • Tanaka T, Fukui T, Fujiwara S, Atomi H & Imanaka T (2004) Concerted action of diacetylchitobiose deacetylase and Exo-ss-d-glucosaminidase in a novel chitinolytic pathway in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. J Biol Chem 279: 3002130027.
  • Tarling CA, He S, Sulzenbacher G, Bignon C, Bourne Y, Henrissat B & Withers SG (2003) Identification of the catalytic nucleophile of the family 29 alpha-l-fucosidase from Thermotoga maritima through trapping of a covalent glycosyl-enzyme intermediate and mutagenesis. J Biol Chem 278: 4739447399.
  • Tischler AD & Camilli A (2004) Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation. Mol Microbiol 53: 857869.
  • Torres-Larios A, Swinger KK, Krasilnikov AS, Pan T & Mondragon A (2005) Crystal structure of the RNA component of bacterial ribonuclease P. Nature 437: 584587.
  • Toth EA & Yeates TO (2000) The structure of adenylosuccinate lyase, an enzyme with dual activity in the de novo purine biosynthetic pathway. Structure Fold Des 8: 163174.
  • Van Den Ent F & Lowe J (2000) Crystal structure of the cell division protein FtsA from Thermotoga maritima. EMBO J 19: 53005307.
  • Van Ooteghem SA, Beer SK & Yue PC (2002) Hydrogen production by the thermophilic bacterium Thermotoga neapolitana. Appl Biochem Biotechnol 98–100: 177189.
  • Van Ooteghem SA, Jones A, Van Der Lelie D, Dong B & Mahajan D (2004) H(2) production and carbon utilization by Thermotoga neapolitana under anaerobic and microaerobic growth conditions. Biotechnol Lett 26: 12231232.
  • Vargas M & Noll KM (1996) Catabolite repression in the hyperthermophilic bacterium Thermotoga neapolitana is independent of cAMP. Microbiology 142: 139144.
  • Varrot A, Yip VL, Li Y, Rajan SS, Yang X, Anderson WF, Thompson J, Withers SG & Davies GJ (2005) NAD+and metal-ion dependent hydrolysis by family 4 glycosidases: structural insight into specificity for phospho-beta-d-glucosides. J Mol Biol 346: 423435.
  • Velikodvorskaya TV, Volkov I, Vasilevko VT, Zverlov VV & Piruzian ES (1997) Purification and some properties of Thermotoga neapolitana thermostable xylanase B expressed in E. coli cells. Biochemistry (Moscow) 62: 6670.
  • Vieille C, Hess JM, Kelly RM & Zeikus JG (1995) xylA cloning and sequencing and biochemical characterization of xylose isomerase from Thermotoga neapolitana. Appl Environ Microbiol 61: 18671875.
  • Wagner E, Marcandier S, Egeter O, Deutscher J, Gotz F & Bruckner R (1995) Glucose kinase-dependent catabolite repression in Staphylococcus xylosus. J Bacteriol 177: 61446152.
  • Wahl MC, Bourenkov GP, Bartunik HD & Huber R (2000a) Flexibility, conformational diversity and two dimerization modes in complexes of ribosomal protein L12. EMBO J 19: 174186.
  • Wahl MC, Huber R, Marinkovic S, Weyher-Stingl E & Ehlert S (2000b) Structural investigations of the highly flexible recombinant ribosomal protein L12 from Thermotoga maritima. Biol Chem 381: 221229.
  • Wassenberg D, Schurig H, Liebl W & Jaenicke R (1997) Xylanase XynA from the hyperthermophilic bacterium Thermotoga maritima: structure and stability of the recombinant enzyme and its isolated cellulose-binding domain. Protein Sci 6: 17181726.
  • Wassenberg D, Liebl W & Jaenicke R (2000) Maltose-binding protein from the hyperthermophilic bacterium Thermotoga maritima: stability and binding properties. J Mol Biol 295: 279288.
  • Watanabe S, Hamano M, Kakeshita H, Bunai K, Tojo S, Yamaguchi H, Fujita Y, Wong SL & Yamane K (2003) Mannitol-1-phosphate dehydrogenase (MtlD) is required for mannitol and glucitol assimilation in Bacillus subtilis: possible cooperation of mtl and gut operons. J Bacteriol 185: 48164824.
  • Whiteley M, Bangera MG, Bumgarner RE, Parsek MR, Teitzel GM, Lory S & Greenberg EP (2001) Gene expression in Pseudomonas aeruginosa biofilms. Nature 413: 860864.
  • Wiegert T, Hagmaier K & Schumann W (2004) Analysis of orthologous hrcA genes in Escherichia coli and Bacillus subtilis. FEMS Microbiol Lett 234: 917.
  • Wilderman PJ, Sowa NA, FitzGerald DJ, FitzGerald PC, Gottesman S, Ochsner UA & Vasil ML (2004) Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis. Proc Natl Acad Sci USA 101: 97929797.
  • Winterhalter C, Heinrich P, Candussio A, Wich G & Liebl W (1995) Identification of a novel cellulose-binding domain within the multidomain 120 kDa xylanase XynA of the hyperthermophilic bacterium Thermotoga maritima. Mol Microbiol 15: 431444.
  • Woodward J, Heyer NI, Getty JP, O'Neill HM, Pinkhassik E & Evans BR (2002) Efficient Hydrogen Production Using Enzymes of the Pentose Phosphate Pathway, Vol. NREL/CP-610-32405. US Department of Energy, Washington, DC.
  • Worbs M, Huber R & Wahl MC (2000) Crystal structure of ribosomal protein L4 shows RNA-binding sites for ribosome incorporation and feedback control of the S10 operon. EMBO J 19: 807818.
  • Worning P, Jensen LJ, Nelson KE, Brunak S & Ussery DW (2000) Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima. Nucleic Acids Res 28: 706709.
  • Wu SP, Mansy SS & Cowan JA (2005) Iron–sulfur cluster biosynthesis. Molecular chaperone DnaK promotes IscU-bound [2Fe–2S] cluster stability and inhibits cluster transfer activity. Biochemistry (Moscow) 44: 42844293.
  • Xu Q, Schwarzenbacher R, McMullan D et al. (2004) Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 Å resolution. Proteins 56: 171175.
  • Xu Q, Schwarzenbacher R, McMullan D et al. (2005) Crystal structure of a formiminotetrahydrofolate cyclodeaminase (TM1560) from Thermotoga maritima at 2.80 Å resolution reveals a new fold. Proteins 58: 976981.
  • Xue Y & Shao W (2004) Expression and characterization of a thermostable beta-xylosidase from the hyperthermophile, Thermotoga maritima. Biotechnol Lett 26: 15111515.
  • Yang Z, Savchenko A, Yakunin A, Zhang R, Edwards A, Arrowsmith C & Tong L (2003) Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643. J Biol Chem 278: 88048808.
  • Yang H, Ichinose H, Yoshida M, Nakajima M, Kobayashi H & Kaneko S (2006) Characterization of a thermostable endo-beta-1,4-d-galactanase from the hyperthermophile Thermotoga maritima. Biosci Biotechnol Biochem 70: 538541.
  • Yernool DA, McCarthy JK, Eveleigh DE & Bok JD (2000) Cloning and characterization of the glucooligosaccharide catabolic pathway beta-glucan glucohydrolase and cellobiose phosphorylase in the marine hyperthermophile Thermotoga neapolitana. J Bacteriol 182: 51725179.
  • Yip VL, Varrot A, Davies GJ, Rajan SS, Yang X, Thompson J, Anderson WF & Withers SG (2004) An unusual mechanism of glycoside hydrolysis involving redox and elimination steps by a family 4 beta-glycosidase from Thermotoga maritima. J Am Chem Soc 126: 83548355.
  • Yu JS, Vargas M, Mityas C & Noll KM (2001) Liposome-mediated DNA uptake and transient expression in Thermotoga. Extremophiles 5: 5360.
  • Zhang RG, Kim Y, Skarina T, Beasley S, Laskowski R, Arrowsmith C, Edwards A, Joachimiak A & Savchenko A (2002) Crystal structure of Thermotoga maritima 0065, a member of the IclR transcriptional factor family. J Biol Chem 277: 1918319190.
  • Zhang J, Zhang Y & Inouye M (2003) Thermotoga maritima MazG protein has both nucleoside triphosphate pyrophosphohydrolase and pyrophosphatase activities. J Biol Chem 278: 2140821414.
  • Zuber U & Schumann W (1994) CIRCE, a novel heat shock element involved in regulation of heat shock operon dnaK of Bacillus subtilis. J Bacteriol 176: 13591363.
  • Zverlov V, Piotukh K, Dakhova O, Velikodvorskaya G & Borriss R (1996) The multidomain xylanase A of the hyperthermophilic bacterium Thermotoga neapolitana is extremely thermoresistant. Appl Microbiol Biotechnol 45: 245247.
  • Zverlov VV, Volkov IY, Velikodvorskaya TV & Schwarz WH (1997a) Thermotoga neapolitanabglB gene, upstream of lamA, encodes a highly thermostable beta-glucosidase that is a laminaribiase. Microbiology 143: 35373542.
  • Zverlov VV, Volkov IY, Velikodvorskaya TV & Schwarz WH (1997b) Highly thermostable endo-1,3-beta-glucanase (laminarinase) LamA from Thermotoga neapolitana: nucleotide sequence of the gene and characterization of the recombinant gene product. Microbiology 143: 17011708.
  • Zverlov VV, Volkov IY, Velikodvorskaya GA & Schwarz WH (2001) The binding pattern of two carbohydrate-binding modules of laminarinase Lam16A from Thermotoga neapolitana: differences in beta-glucan binding within family CBM4. Microbiology 147: 621629.