SEARCH

SEARCH BY CITATION

References

  • Arnold ML, Sapir Y & Martin NH (2008) Genetic exchange and the origin of adaptations: prokaryotes to primates. Philos T Roy Soc B 363: 28132820.
  • Ayub ND, Pettinari MJ, Mendez BS & Lopez NI (2007) The polyhydroxyalkanoate genes of a stress resistant Antarctic Pseudomonas are situated within a genomic island. Plasmid 58: 240248.
  • Badaut C, Williams R, Arluison V, Bouffartigues E, Robert B, Buc H & Rimsky S (2002) The degree of oligomerization of the H-NS nucleoid structuring protein is related to specific binding to DNA. J Biol Chem 277: 4165741666.
  • Bang IS, Audia JP, Park YK & Foster JW (2002) Autoinduction of the ompR response regulator by acid shock and control of the Salmonella enterica acid tolerance response. Mol Microbiol 44: 12351250.
  • Baños RC, Pons JI, Madrid C & Juárez A (2008) A global modulatory role for the Yersinia enterocolitica H-NS protein. Microbiology 154: 12811289.
  • Becker NA, Kahn JD & Maher LJ III (2007) Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli. Nucleic Acids Res 35: 39884000.
  • Becq J, Gutierrez MC, Rosas-Magallanes V, Rauzier J, Gicquel B, Neyrolles O & Deschavanne P (2007) Contribution of horizontally acquired genomic islands to the evolution of the tubercle bacilli. Mol Biol Evol 24: 18611871.
  • Beltrametti F, Kresse AU & Guzmán CA (1999) Transcriptional regulation of the esp genes of enterohemorrhagic Escherichia coli. J Bacteriol 181: 34093418.
  • Bertin P, Benhabiles N, Krin E, Laurent-Winter C, Tendeng C, Turlin E, Thomas A, Danchin A & Brasseur R (1999) The structural and functional organization of H-NS-like proteins is evolutionarily conserved in Gram-negative bacteria. Mol Microbiol 31: 319329.
  • Bloch V, Yang Y, Margeat E, Chavanieu A, Augé MT, Robert B, Arold S, Rimsky S & Kochoyan M (2003) The H-NS dimerization domain defines a new fold contributing to DNA recognition. Nat Struct Biol 10: 212218.
  • Blot N, Mavathur R, Geertz M, Travers A & Muskhelishvili G (2006) Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome. EMBO Rep 7: 710715.
  • Bouffartigues E, Buckle M, Badaut C, Travers A & Rimsky S (2007) H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing. Nat Struct Mol Biol 14: 441448.
  • Bourhy P, Salaun L, Lajus A, Medigue C, Boursaux-Eude C & Picardeau M (2007) A genomic island of the pathogen Leptospira interrogans serovar Lai can excise from its chromosome. Infect Immun 75: 677683.
  • Cerdan R, Bloch V, Yang Y, Bertin P, Dumas C, Rimsky S, Kochoyan M & Arold ST (2003) Crystal structure of the N-terminal dimerisation domain of VicH, the H-NS-like protein of Vibrio cholerae. J Mol Biol 334: 179185.
  • Chen CC & Wu HY (2005) LeuO protein delimits the transcriptionally active and repressive domains on the bacterial chromosome. J Biol Chem 280: 1511115121.
  • Chen CC, Chou MY, Huang CH, Majumder A & Wu HY (2005) A cis-spreading nucleoprotein filament is responsible for the gene silencing activity found in the promoter relay mechanism. J Biol Chem 280: 51015112.
  • Coburn PS, Baghdayan AS, Dolan GT & Shankar N (2007) Horizontal transfer of virulence genes encoded on the Enterococcus faecalis pathogenicity island. Mol Microbiol 63: 530544.
  • Cukier-Kahn R, Jacquet M & Gros F (1972) Two heat-resistant, low molecular weight proteins from Escherichia coli that stimulate DNA-directed RNA synthesis. P Natl Acad Sci USA 69: 36433647.
  • Dame RT & Goosen N (2002) HU: promoting or counteracting DNA compaction? FEBS Lett 529: 151156.
  • Dame RT, Luijsterburg MS, Krin E, Bertin PN, Wagner R & Wuite GJ (2005) DNA bridging: a property shared among H-NS-like proteins. J Bacteriol 187: 18451848.
  • Dame RT, Noom MC & Wuite GJ (2006) Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation. Nature 444: 387390.
  • De Los Rios S & Perona JJ (2007) Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assembly. J Mol Biol 366: 15891602.
  • Dobrindt U, Hochhut B, Hentschel U & Hacker J (2004) Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol 2: 414424.
  • Dorman CJ (2004) H-NS, a universal regulator for a dynamic genome. Nat Rev Microbiol 2: 391400.
  • Dorman CJ (2006) DNA supercoiling and bacterial gene expression. Sci Prog 89: 151166.
  • Dorman CJ (2007a) H-NS, the genome sentinel. Nat Rev Microbiol 5: 157161.
  • Dorman CJ (2007b) Probing bacterial nucleoid structure with optical tweezers. BioEssays 29: 212216.
  • Dorman CJ, Ní Bhriain N & Higgins CF (1990) DNA supercoiling and environmental regulation of virulence gene expression in Shigella flexneri. Nature 344: 789792.
  • Dorman CJ, Hinton JCD & Free A (1999) Domain organization and oligomerization among H-NS-like nucleoid-associated proteins in bacteria. Trends Microbiol 7: 124128.
  • Doyle M, Fookes M, Ivens A, Mangan MW, Wain J & Dorman CJ (2007) An H-NS-like stealth protein aids horizontal DNA transmission in bacteria. Science 315: 251252.
  • Esposito D, Petrovic A, Harris R et al. (2002) H-NS oligomerization domain structure reveals the mechanism for high order self-association of the intact protein. J Mol Biol 324: 841850.
  • Falconi M, Brandi A, La Teana A, Gualerzi CO & Pon CL (1996) Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression. Mol Microbiol 19: 965975.
  • Free A & Dorman CJ (1995) Coupling of Escherichia coli hns mRNA levels to DNA synthesis by autoregulation: implications for growth phase control. Mol Microbiol 18: 101113.
  • Gal-Mor O & Finlay BB (2006) Pathogenicity islands: a molecular toolbox for bacterial virulence. Cell Microbiol 8: 17071719.
  • Grainger DC, Hurd D, Goldberg MD & Busby SJW (2006) Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome. Nucleic Acids Res 34: 46424652.
  • Harmer TL & Schleif R (2001) The C-terminal end of AraC tightly binds to the rest of its domain. J Biol Chem 276: 48864888.
  • Hatfield GW & Benham CJ (2002) DNA topology-mediated control of global gene expression in Escherichia coli. Annu Rev Genet 36: 175203.
  • Hensel M (2004) Evolution of pathogenicity islands of Salmonella enterica. Int J Med Microbiol 294: 95102.
  • Higgins CF, Dorman CJ, Stirling DA, Waddell L, Booth IR, May G & Bremer E (1988) A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli. Cell 52: 569584.
  • Hubber AM, Sullivan JT & Ronson CW (2007) Symbiosis-induced cascade regulation of the Mesorhizobium loti R7A VirB/D4 type IV secretion system. Mol Plant Microbe In 20: 255261.
  • Hulton CS, Seirafi A, Hinton JC, Sidebotham JM, Waddell L, Pavitt GD, Owen-Hughes T, Spassky A, Buc H & Higgins CF (1990) Histone-like protein H1 (H-NS), DNA supercoiling, and gene expression in bacteria. Cell 63: 631642.
  • Hurme R & Rhen M (1998) Temperature sensing in bacterial gene regulation: what it all boils down to. Mol Microbiol 30: 16.
  • Jacquet M, Cukier-Kahn R, Pla J & Gros F (1971) A thermostable protein factor acting on in vitro DNA transcription. Biochem Bioph Res Co 45: 15971607.
  • Kelly A, Conway C, O Cróinín T, Smith SG & Dorman CJ (2006) DNA supercoiling and the Lrp protein determine the directionality of fim switch DNA inversion in Escherichia coli K-12. J Bacteriol 188: 53565363.
  • Kostrewa D, Granzin J, Koch C, Choe HW, Raghunathan S, Wolf W, Labahn J, Kahmann R & Saenger W (1991) Three-dimensional structure of the E. coli DNA-binding protein FIS. Nature 349: 178180.
  • Lucchini S, Rowley G, Goldberg MD, Hurd D, Harrison M & Hinton JCD (2006) H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathog 2: e81.
  • May G, Dersch P, Haardt M, Middendorf A & Bremer E (1990) The osmZ (bglY) gene encodes the DNA-binding protein H-NS (H1a), a component of the Escherichia coli K12 nucleoid. Mol Gen Genet 224: 8190.
  • McFeeters RL, Altieri AS, Cherry S, Tropea JE, Waugh DS & Byrd RA (2007) The high-precision solution structure of Yersinia modulating protein YmoA provides insight into interaction with H-NS. Biochemistry 46: 1397513982.
  • Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, Libby SJ & Fang FC (2006) Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science 313: 236238.
  • Navarre WW, McClelland M, Libby SJ & Fang FC (2007) Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA. Genes Dev 21: 14561471.
  • Normanno D, Vanzi F & Pavone FS (2008) Single-molecule manipulation reveals supercoiling-dependent modulation of lac repressor-mediated DNA looping. Nucleic Acids Res 36: 25052513.
  • O'Gara JP & Dorman CJ (2000) Effects of local transcription and H-NS on inversion of the fim switch of Escherichia coli. Mol Microbiol 36: 457466.
  • Ono S, Goldberg MD, Olsson T, Esposito D, Hinton JC & Ladbury JE (2005) H-NS is a part of a thermally controlled mechanism for bacterial gene regulation. Biochem J 391: 203213.
  • Oshima T, Ishikawa S, Kurokawa K, Aiba H & Ogasawara N (2006) Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymerase. DNA Res 13: 141153.
  • Pedersen AG, Jensen LJ, Brunak S, Staerfeldt HH & Ussery DW (2000) A DNA structural atlas for Escherichia coli. J Mol Biol 299: 907930.
  • Prosseda G, Falconi M, Giangrossi M, Gualerzi CO, Micheli G & Colonna B (2004) The virF promoter in Shigella: more than just a curved DNA stretch. Mol Microbiol 51: 523537.
  • Pul U, Wurm R, Lux B, Meltzer M, Menzel A & Wagner R (2005) LRP and H-NS: cooperative partners for transcription regulation at Escherichia coli rRNA promoters. Mol Microbiol 58: 864876.
  • Qui X, Gurkar AU & Lory S (2006) Interstrain transfer of the large pathogenicity island (PAPI-1) of Pseudomonas aeruginosa. P Natl Acad Sci USA 103: 1983019835.
  • Sinden RR, Pearson CE, Potaman VN & Ussery DW (1998) DNA: structure and function. Adv Gen Biol 5A: 1141.
  • Stoebel DM, Free A & Dorman CJ (2008) Anti-silencing: overcoming H-NS-mediated repression of transcription in gram-negative enteric bacteria. Microbiology 154: 25332545.
  • Sugimura S & Crothers DM (2006) Stepwise binding and bending of DNA by Escherichia coli integration host factor. P Natl Acad Sci USA 103: 1851018514.
  • Swinger KK & Rice PA (2004) IHF and HU: flexible architects of bent DNA. Curr Opin Struc Biol 14: 2835.
  • Swinger KK & Rice PA (2007) Structure-based analysis of HU-DNA binding. J Mol Biol 365: 10051016.
  • Tobe T, Yoshikawa M & Sasakawa C (1995) Thermoregulation of virB transcription in Shigella flexneri by sensing of changes in local DNA superhelicity. J Bacteriol 177: 10941097.
  • Turner EC & Dorman CJ (2007) H-NS antagonism in Shigella flexneri by VirB, a virulence gene transcription regulator that is closely related to plasmid partition factors. J Bacteriol 189: 34033413.
  • Ubeda C, Barry P, Penades JR & Novick RP (2007) A pathogenicity island replicon in Staphylococcus aureus replicates as an unstable plasmid. P Natl Acad Sci USA 104: 1418214188.
  • Vivero A, Baños RC, Mariscotti JF, Oliveros JC, García-del Portillo F, Juárez A & Madrid C (2008) Modulation of horizontally acquired genes by the Hha-YdgT proteins in Salmonella enterica serovar Typhimurium. J Bacteriol 190: 11521156.
  • Wade JT, Struhl K, Busby SJW & Grainger DC (2007) Genomic analysis of protein–DNA interactions in bacteria: insights into transcription and chromosome organization. Mol Microbiol 65: 2126.
  • Wang YM, Tegenfeldt JO, Reisner W, Riehn R, Guan XJ, Guo L, Golding I, Cox EC, Sturm J & Austin RH (2005) Single-molecule studies of repressor-DNA interactions show long-range interactions. P Natl Acad Sci USA 102: 97969801.
  • Williamson HS & Free A (2005) A truncated H-NS-like protein from enteropathogenic Escherichia coli acts as an H-NS antagonist. Mol Microbiol 55: 808827.
  • Zacharias M, Theissen G, Bradaczek C & Wagner R (1991) Analysis of sequence elements important for the synthesis and control of ribosomal RNA in E. coli. Biochimie 73: 699712.
  • Zurla C, Samuely T, Bertoni G, Valle F, Dietler G, Finzi L & Dunlap DD (2007) Integration host factor alters LacI-induced DNA looping. Biophys Chem 128: 245252.