SEARCH

SEARCH BY CITATION

References

  • Beernink HT & Morrical SW (1999) RMPs: recombination/replication mediator proteins. Trends Biochem Sci 24: 385389.
  • Beiter K, Wartha F, Albiger B, Normark S, Zychlinsky A & Henriques-Normark B (2006) An endonuclease allows Streptococcus pneumoniae to escape from neutrophil extracellular traps. Curr Biol 16: 401407.
  • Bentley SD, Aanensen DM, Mavroidi A et al. (2006) Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genet 2: e31.
  • Bergé M, Moscoso M, Prudhomme M, Martin B & Claverys JP (2002) Uptake of transforming DNA in gram-positive bacteria: a view from Streptococcus pneumoniae. Mol Microbiol 45: 411421.
  • Bergé M, Mortier-Barrière I, Martin B & Claverys JP (2003) Transformation of Streptococcus pneumoniae relies on DprA- and RecA-dependent protection of incoming single strands. Mol Microbiol 50: 527536.
  • Berka RM, Hahn J, Albano M, Draskovic I, Persuh M, Cui XJ, Sloma A, Widner W & Dubnau D (2002) Microarray analysis of the Bacillus subtilis K-state: genome-wide expression changes dependent on ComK. Mol Microbiol 43: 13311345.
  • Bernstein H, Byerly HC, Hopf FA & Michod RE (1985) The evolutionary role of recombinational repair and sex. Int Rev Cytol 96: 124.
  • Bolotin A, Quinquis B, Renault P et al. (2004) Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus. Nat Biotechnol 22: 15541558.
  • Burghout P, Bootsma HJ, Kloosterman TG, Bijlsma JJ, De Jongh CE, Kuipers OP & Hermans PW (2007) Search for genes essential for pneumococcal transformation: the RADA DNA repair protein plays a role in genomic recombination of donor DNA. J Bacteriol 189: 65406550.
  • Campbell EA, Choi SY & Masure HR (1998) A competence regulon in Streptococcus pneumoniae revealed by genomic analysis. Mol Microbiol 27: 929939.
  • Carrasco B, Fernandez S, Asai K, Ogasawara N & Alonso JC (2002) Effect of the recU suppressors sms and subA on DNA repair and homologous recombination in Bacillus subtilis. Mol Genet Genomics 266: 899906.
  • Carrasco B, Manfredi C, Ayora S & Alonso JC (2008) Bacillus subtilis SsbA and dATP regulate RecA nucleation onto single-stranded DNA. DNA Repair 7: 990996.
  • Chen I & Dubnau D (2004) DNA uptake during bacterial transformation. Nat Rev Microbiol 2: 241249.
  • Chen I, Christie PJ & Dubnau D (2005) The ins and outs of DNA transfer in bacteria. Science 310: 14561460.
  • Chen I, Provvedi R & Dubnau D (2006) A macromolecular complex formed by a pilin-like protein in competent Bacillus subtilis. J Biol Chem 281: 2172021727.
  • Claverys JP, Prudhomme M & Martin B (2006) Induction of competence regulons as general stress responses in Gram-positive bacteria. Annu Rev Microbiol 60: 451475.
  • Claverys JP, Martin B & Håvarstein LS (2007) Competence-induced fratricide in streptococci. Mol Microbiol 64: 14231433.
  • Craig L & Li J (2008) Type IV pili: paradoxes in form and function. Curr Opin Struc Biol 18: 267277.
  • Dagkessamanskaia A, Moscoso M, Hénard V, Guiral S, Overweg K, Reuter M, Martin B, Wells J & Claverys JP (2004) Interconnection of competence, stress and CiaR regulons in Streptococcus pneumoniae: competence triggers stationary phase autolysis of ciaR mutant cells. Mol Microbiol 51: 10711086.
  • Desai BV & Morrison DA (2006) An unstable competence induced protein, CoiA, promotes processing of donor DNA after uptake during genetic transformation in Streptococcus pneumoniae. J Bacteriol 188: 51775186.
  • Desai BV & Morrison DA (2007) Transformation in Streptococcus pneumoniae: formation of eclipse complex in a coiA mutant implicates CoiA in genetic recombination. Mol Microbiol 63: 11071117.
  • Dubnau D (1999) DNA uptake in bacteria. Annu Rev Microbiol 53: 217244.
  • Dubnau D, Vidoff-Abelson R, Scher B & Cirigliano C (1973) Fate of transforming deoxyribonucleic acid after uptake by competent Bacillus subtilis: phenotypic characterization of radiation-sensitive recombination-deficient mutants. J Bacteriol 114: 273286.
  • Ephrussi-Taylor H (1960) L'état du DNA transformant au cours des premières phases de la transformation bactérienne. CR Soc Biol 154: 19511955.
  • Fernandez S, Ayora S & Alonso JC (2000) Bacillus subtilis homologous recombination: genes and products. Res Microbiol 151: 481486.
  • Ghei OK & Lacks SA (1967) Recovery of donor deoxyribonucleic acid marker activity from eclipse in pneumococcal transformation. J Bacteriol 93: 816829.
  • Grove DE & Bryant FR (2006) Effect of Mg2+ on the DNA binding modes of the Streptococcus pneumoniae SsbA and SsbB proteins. J Biol Chem 281: 20872094.
  • Grove DE, Willcox S, Griffith JD & Bryant FR (2005) Differential single-stranded DNA binding properties of the paralogous SsbA and SsbB proteins from Streptococcus pneumoniae. J Biol Chem 280: 1106711073.
  • Guiral S, Dagkessamanskaia A, Moscoso M & Claverys JP (2007) Competence in Streptococcus pneumoniae: what is it for? The Molecular Biology of Streptococci (HakenbeckR & ChhatwalGS, eds), pp. 6181. Horizon Scientific Press, Norwich, UK.
  • Hahn J, Maier B, Haijema BJ, Sheetz M & Dubnau D (2005) Transformation proteins and DNA uptake localize to the cell poles in Bacillus subtilis. Cell 122: 5971.
  • Haijema BJ, Hahn J, Haynes J & Dubnau D (2001) A ComGA-dependent checkpoint limits growth during the escape from competence. Mol Microbiol 40: 5264.
  • Halpern D, Gruss A, Claverys JP & El Karoui M (2004) rexAB mutants in Streptococcus pneumoniae. Microbiology 150: 24092414.
  • Hamilton HL & Dillard JP (2006) Natural transformation of Neisseria gonorrhoeae: from DNA donation to homologous recombination. Mol Microbiol 59: 376385.
  • Hamoen LW, Smits WK, De Jong A, Holsappel S & Kuipers OP (2002) Improving the predictive value of the competence transcription factor (ComK) binding site in Bacillus subtilis using a genomic approach. Nucl Acids Res 202: 55175528.
  • Johnsborg O, Eldholm V & Havarstein LS (2007) Natural genetic transformation: prevalence, mechanisms and function. Res Microbiol 158: 767778.
  • Johnsborg O, Eldholm V, Bjornstad ML & Havarstein LS (2008) A predatory mechanism dramatically increases the efficiency of lateral gene transfer in Streptococcus pneumoniae and related commensal species. Mol Microbiol 69: 245253.
  • Kahn ME, Barany F & Smith HO (1983) Transformasomes: specialized membranous structures that protect DNA during Haemophilus transformation. P Natl Acad Sci USA 80: 69276931.
  • Kantake N, Madiraju MVVM, Sugiyama T & Kowalczykowski SC (2002) Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: a common step in genetic recombination. P Natl Acad Sci USA 99: 1532715332.
  • Karudapuram S, Zhao X & Barcak GJ (1995) DNA sequence and characterization of Haemophilus influenzae dprA+, a gene required for chromosomal but not plasmid transformation. J Bacteriol 177: 32353240.
  • Kidane D & Graumann PL (2005) Intracellular protein and DNA dynamics in competent Bacillus subtilis cells. Cell 122: 7384.
  • Kohiyama M, Hiraga S, Matic I & Radman M (2003) Bacterial sex: playing voyeurs 50 years later. Science 301: 802803.
  • Kowalczykowski SC & Krupp RA (1987) Effects of Escherichia coli SSB protein on the single-stranded DNA-dependent ATPase activity of Escherichia coli RecA protein. Evidence that SSB protein facilitates the binding of RecA protein to regions of secondary structure within single-stranded DNA. J Mol Biol 193: 97113.
  • Kramer N, Hahn J & Dubnau D (2007) Multiple interactions among the competence proteins of Bacillus subtilis. Mol Microbiol 65: 454464.
  • Krüger E, Msadek T, Ohlmeier S & Hecker M (1997) The Bacillus subtilis clpC operon encodes DNA repair and competence proteins. Microbiology 143: 13091316.
  • Lacks S, Greenberg B & Neuberger M (1975) Identification of a deoxyribonuclease implicated in genetic transformation of Diplococcus pneumoniae. J Bacteriol 123: 222232.
  • Lacks SA & Neuberger M (1975) Membrane location of a deoxyribonuclease implicated in the genetic transformation of Diplococcus pneumoniae. J Bacteriol 124: 13211329.
  • Lavery PE & Kowalczykowski SC (1992) A postsynaptic role for single-stranded DNA-binding protein in recA protein-promoted DNA strand exchange. J Biol Chem 267: 93159320.
  • Lecointe F, Serena C, Velten M, Costes A, McGovern S, Meile JC, Errington J, Ehrlich SD, Noirot P & Polard P (2007) Anticipating chromosomal replication fork arrest: SSB targets repair DNA helicases to active forks. EMBO J 26: 42394251.
  • Lindner C, Nijland R, Van Hartskamp M, Bron S, Hamoen L & Kuipers OP (2004) Differential expression of two paralogous genes of Bacillus subtilis encoding single-stranded DNA binding protein. J Bacteriol 186: 10971105.
  • Lu D & Keck JL (2008) Structural basis of Escherichia coli single-stranded DNA-binding protein stimulation of exonuclease I. P Natl Acad Sci USA 105: 91699174.
  • Luisi-DeLuca C & Kolodner R (1994) Purification and characterization of the Escherichia coli RecO protein. Renaturation of complementary single-stranded DNA molecules catalyzed by the RecO protein. J Mol Biol 236: 124138.
  • Maier B, Chen I, Dubnau D & Sheetz MP (2004) DNA transport into Bacillus subtilis requires proton motive force to generate large molecular forces. Nat Struct Mol Biol 11: 643649.
  • Martin B, Ruellan JM, Angulo JF, Devoret R & Claverys JP (1992) Identification of the recA gene of Streptococcus pneumoniae. Nucl Acids Res 20: 6412.
  • Maynard Smith J, Dowson CG & Spratt BG (1991) Localized sex in bacteria. Nature 349: 2931.
  • Méjean V & Claverys JP (1984) Use of a cloned fragment to analyze the fate of donor DNA in transformation of Streptococcus pneumoniae. J Bacteriol 158: 11751178.
  • Méjean V & Claverys JP (1988) Polarity of DNA entry in transformation of Streptococcus pneumoniae. Mol Gen Genet 213: 444448.
  • Méjean V & Claverys JP (1993) DNA processing during entry in transformation of Streptococcus pneumoniae. J Biol Chem 268: 55945599.
  • Miao R & Guild WR (1970) Competent Diplococcus pneumoniae accept both single- and double-stranded deoxyribonucleic acid. J Bacteriol 101: 361364.
  • Mirouze N (2007) Identification du produit d'un gène tardif impliqué dans la régulation de la compétence et le processing de l'ADN lors de la transformation naturelle chez S. pneumoniae. PhD Dissertation, Univ. P. Sabatier, Toulouse, France.
  • Morrison D, Mortier-Barrière I, Attaiech L & Claverys JP (2007) Identification of the major protein component of the pneumococcal eclipse complex. J Bacteriol 189: 64976500.
  • Morrison DA (1977) Transformation in pneumococcus: existence and properties of a complex involving donor deoxyribonucleate single strands in eclipse. J Bacteriol 132: 576583.
  • Morrison DA (1978) Transformation in pneumococcus: protein content of eclipse complex. J Bacteriol 136: 548557.
  • Morrison DA & Baker M (1979) Competence for genetic transformation in pneumococcus depends on synthesis of a small set of proteins. Nature 282: 215217.
  • Morrison DA & Mannarelli B (1979) Transformation in pneumococcus: nuclease resistance of deoxyribonucleic acid in eclipse complex. J Bacteriol 140: 655665.
  • Morrison DA, Baker M & Mannarelli B (1979) A protein component of the pneumococcal eclipse complex. Transformation – 1978 (GloverSW & ButlerLO, eds). pp. 4352. Cotswold Press Ltd, Oxford, UK.
  • Mortensen UH, Bendixen C, Sunjevaric I & Rothstein R (1996) DNA strand annealing is promoted by the yeast Rad52 protein. P Natl Acad Sci USA 93: 1072910734.
  • Mortier-Barrière I, Velten M, Dupaigne P et al. (2007) A key presynaptic role in transformation for a widespread bacterial protein: DprA conveys incoming ssDNA to RecA. Cell 130: 824836.
  • Ogura M, Yamaguchi H, Kobayashi K, Ogasawara N, Fujita Y & Tanaka T (2002) Whole-genome analysis of genes regulated by the Bacillus subtilis competence transcription factor ComK. J Bacteriol 184: 23442351.
  • Peterson S, Sung CK, Cline R et al. (2004) Identification of competence pheromone responsive genes in Streptococcus pneumoniae. Mol Microbiol 51: 10511070.
  • Provvedi R, Chen I & Dubnau D (2001) NucA is required for DNA cleavage during transformation of Bacillus subtilis. Mol Microbiol 40: 634644.
  • Redfield RJ, Cameron AD, Qian Q, Hinds J, Ali TR, Kroll JS & Langford PR (2005) A novel CRP-dependent regulon controls expression of competence genes in Haemophilus influenzae. J Mol Biol 347: 735747.
  • Rocha EP, Cornet E & Michel B (2005) Comparative and evolutionary analysis of the bacterial homologous recombination systems. PLoS Genet 1: e15.
  • Rosenthal AL & Lacks SA (1980) Complex structure of the membrane nuclease of Streptococcus pneumoniae revealed by two dimensional electrophoresis. J Mol Biol 141: 133146.
  • Shoemaker NB & Guild WR (1972) Kinetics of integration of transforming DNA in pneumococcus. P Natl Acad Sci USA 69: 33313335.
  • Steffen SE, Katz FS & Bryant FR (2002) Complete inhibition of Streptococcus pneumoniae RecA protein-catalyzed ATP hydrolysis by single-stranded DNA-binding protein (SSB protein): implications for the mechanism of SSB protein-stimulated DNA strand exchange. J Biol Chem 277: 1449314500.
  • Sugiyama T, New JH & Kowalczykowski SC (1998) DNA annealing by RAD52 protein is stimulated by specific interaction with the complex of replication protein A and single-stranded DNA. P Natl Acad Sci USA 95: 60496054.
  • Sung P & Klein H (2006) Mechanism of homologous recombination: mediators and helicases take on regulatory functions. Nat Rev Mol Cell Biol 7: 739750.
  • Tadesse S & Graumann PL (2007) DprA/Smf protein localizes at the DNA uptake machinery in competent Bacillus subtilis cells. BMC Microbiol 7: 105.
  • Thanassi JA, Hartman-Neumann SL, Dougherty TJ, Dougherty BA & Pucci MJ (2002) Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae. Nucleic Acids Res 30: 31523162.
  • Umezu K, Chi N-W & Kolodner RD (1993) Biochemical interaction of the Escherichia coli RecF, RecO, and RecR proteins with RecA protein and single-stranded DNA binding protein. P Natl Acad Sci USA 90: 38753879.