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References

  • Abajy MY, Kopec J, Schiwon K, Burzynski M, Doring M, Bohn C & Grohmann E (2007) A type IV-secretion-like system is required for conjugative DNA transport of broad-host-range plasmid pIP501 in gram-positive bacteria. J Bacteriol 189: 24872496.
  • Alonso G, Baptista K, Ngo T & Taylor DE (2005) Transcriptional organization of the temperature-sensitive transfer system from the IncHI1 plasmid R27. Microbiology 151: 35633573.
  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W & Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 33893402.
  • Aravind L & Koonin EV (1998) The HD domain defines a new superfamily of metal-dependent phosphohydrolases. Trends Biochem Sci 23: 469472.
  • Avila P, Nunez B & De La Cruz F (1996) Plasmid R6K contains two functional oriTs which can assemble simultaneously in relaxosomes in vivo. J Mol Biol 261: 135143.
  • Bahl MI, Hansen LH, Goesmann A & Sorensen SJ (2007) The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. Plasmid 58: 3143.
  • Bannam TL, Teng WL, Bulach D, Lyras D & Rood JI (2006) Functional identification of conjugation and replication regions of the tetracycline resistance plasmid pCW3 from Clostridium perfringens. J Bacteriol 188: 49424951.
  • Beaber JW, Burrus V, Hochhut B & Waldor MK (2002) Comparison of SXT and R391, two conjugative integrating elements: definition of a genetic backbone for the mobilization of resistance determinants. Cell Mol Life Sci 59: 20652070.
  • Berg T, Firth N, Apisiridej S, Hettiaratchi A, Leelaporn A & Skurray RA (1998) Complete nucleotide sequence of pSK41: evolution of staphylococcal conjugative multiresistance plasmids. J Bacteriol 180: 43504359.
  • Bergquist PL, Saadi S & Maas WK (1986) Distribution of basic replicons having homology with RepFIA, RepFIB, and RepFIC among IncF group plasmids. Plasmid 15: 1934.
  • Bolland S, Llosa M, Avila P & De La Cruz F (1990) General organization of the conjugal transfer genes of the IncW plasmid R388 and interactions between R388 and IncN and IncP plasmids. J Bacteriol 172: 57955802.
  • Boltner D & Osborn AM (2004) Structural comparison of the integrative and conjugative elements R391, pMERPH, R997, and SXT. Plasmid 51: 1223.
  • Boltner D, MacMahon C, Pembroke JT, Strike P & Osborn AM (2002) R391: a conjugative integrating mosaic comprised of phage, plasmid, and transposon elements. J Bacteriol 184: 51585169.
  • Boyd EF, Hill CW, Rich SM & Hartl DL (1996) Mosaic structure of plasmids from natural populations of Escherichia coli. Genetics 143: 10911100.
  • Bradley DE (1984) Characteristics and function of thick and thin conjugative pili determined by transfer-derepressed plasmids of incompatibility groups I1, I2, I5, B, K and Z. J Gen Microbiol 130: 14891502.
  • Bradley DE, Taylor DE & Cohen DR (1980) Specification of surface mating systems among conjugative drug resistance plasmids in Escherichia coli K-12. J Bacteriol 143: 14661470.
  • Burrus V, Pavlovic G, Decaris B & Guedon G (2002) The ICESt1 element of Streptococcus thermophilus belongs to a large family of integrative and conjugative elements that exchange modules and change their specificity of integration. Plasmid 48: 7797.
  • Capage MA, Goodspeed JK & Scott JR (1982) Incompatibility group Y member relationships: pIP231 and plasmid prophages P1 and P7. Plasmid 8: 307311.
  • Carattoli A, Bertini A, Villa L, Falbo V, Hopkins KL & Threlfall EJ (2005) Identification of plasmids by PCR-based replicon typing. J Microbiol Meth 63: 219228.
  • Caryl JA & Thomas CD (2006) Investigating the basis of substrate recognition in the pC221 relaxosome. Mol Microbiol 60: 13021318.
  • Caryl JA, Smith MC & Thomas CD (2004) Reconstitution of a staphylococcal plasmid-protein relaxation complex in vitro. J Bacteriol 186: 33743383.
  • Cattoir V, Poirel L, Aubert C, Soussy CJ & Nordmann P (2008) Unexpected occurrence of plasmid-mediated quinolone resistance determinants in environmental Aeromonas spp. Emerg Infect Dis 14: 231237.
  • Cesar CE, Machon C, De La Cruz F & Llosa M (2006) A new domain of conjugative relaxase TrwC responsible for efficient oriT-specific recombination on minimal target sequences. Mol Microbiol 62: 984996.
  • Chen Y, Staddon JH & Dunny GM (2007) Specificity determinants of conjugative DNA processing in the Enterococcus faecalis plasmid pCF10 and the Lactococcus lactis plasmid pRS01. Mol Microbiol 63: 15491564.
  • Chilley PM & Wilkins BM (1995) Distribution of the ardA family of antirestriction genes on conjugative plasmids. Microbiology 141: 21572164.
  • Cho H & Winans SC (2007) TraA, TraC and TraD autorepress two divergent quorum-regulated promoters near the transfer origin of the Ti plasmid of Agrobacterium tumefaciens. Mol Microbiol 63: 17691782.
  • Christie PJ (2004) Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems. Biochim Biophys Acta 1694: 219234.
  • Clewell DB (2007) Properties of Enterococcus faecalis plasmid pAD1, a member of a widely disseminated family of pheromone-responding, conjugative, virulence elements encoding cytolysin. Plasmid 58: 205227.
  • Cloeckaert A, Praud K, Doublet B et al. (2007) Dissemination of an extended-spectrum-beta-lactamase blaTEM-52 gene-carrying IncI1 plasmid in various Salmonella enterica serovars isolated from poultry and humans in Belgium and France between 2001 and 2005. Antimicrob Agents Ch 51: 18721875.
  • Coburn PS, Baghdayan AS, Dolan GT & Shankar N (2007) Horizontal transfer of virulence genes encoded on the Enterococcus faecalis pathogenicity island. Mol Microbiol 63: 530544.
  • Coetzee JN, Datta N & Hedges RW (1972) R factors from Proteus rettgeri. J Gen Microbiol 72: 543552.
  • Coetzee JN, Bradley DE, Lecatsas G, Du Toit L & Hedges RW (1985) Bacteriophage D: an IncD group plasmid-specific phage. J Gen Microbiol 131: 33753383.
  • Coque TM, Novais A, Carattoli A et al. (2008) Dissemination of clonally related Escherichia coli strains expressing extended-spectrum beta-lactamase CTX-M-15. Emerg Infect Dis 14: 195200.
  • Couturier M, Bex F, Bergquist PL & Maas WK (1988) Identification and classification of bacterial plasmids. Microbiol Rev 52: 375395.
  • Crosa JH, Luttropp LK & Falkow S (1976) Mode of replication of the conjugative R-plasmid RSF1040 in Escherichia coli. J Bacteriol 126: 454466.
  • Csitkovits VC, Ethermic D & Zechner EL (2004) Concomitant reconstitution of TraI-catalyzed DNA transesterase and DNA helicase activity in vitro. J Biol Chem 279: 4547745484.
  • De Antonio C, Farias ME, De Lacoba MG & Espinosa M (2004) Features of the plasmid pMV158-encoded MobM, a protein involved in its mobilization. J Mol Biol 335: 733743.
  • De Boever EH, Clewell DB & Fraser CM (2000) Enterococcus faecalis conjugative plasmid pAM373: complete nucleotide sequence and genetic analyses of sex pheromone response. Mol Microbiol 37: 13271341.
  • De La Cruz F, Zabala JC & Ortiz JM (1979) Incompatibility among alpha-hemolytic plasmids studied after inactivation of the alpha-hemolysin gene by transposition of Tn802. Plasmid 2: 507519.
  • Dudley EG, Abe C, Ghigo JM, Latour-Lambert P, Hormazabal JC & Nataro JP (2006) An IncI1 plasmid contributes to the adherence of the atypical enteroaggregative Escherichia coli strain C1096 to cultured cells and abiotic surfaces. Infect Immun 74: 21022114.
  • Evans TJ, Pérez-Mendoza D, Monson RE, Stickland HG & Salmond GPC (2009). Secretion systems of the enterobacterial phytopathogen, Erwinia (K. Wooldridge, ed.) Caister Academic Press, Nottingham, UK.
  • Fernandez-Lopez R, Garcillan-Barcia MP, Revilla C, Lazaro M, Vielva L & De La Cruz F (2006) Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution. FEMS Microbiol Rev 30: 942966.
  • Francia MV & Clewell DB (2002a) Amplification of the tetracycline resistance determinant of pAMalpha1 in Enterococcus faecalis requires a site-specific recombination event involving relaxase. J Bacteriol 184: 51875193.
  • Francia MV & Clewell DB (2002b) Transfer origins in the conjugative Enterococcus faecalis plasmids pAD1 and pAM373: identification of the pAD1 nic site, a specific relaxase and a possible TraG-like protein. Mol Microbiol 45: 375395.
  • Francia MV, Varsaki A, Garcillan-Barcia MP, Latorre A, Drainas C & De La Cruz F (2004) A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol Rev 28: 79100.
  • Freitas AR, Francia MV, Peixe L, Novais C, Jensen L, Willems R, Baquero F & Coque TM (2008) Plasmid characterization of vancomycin resistant Enterococcus faecium strains from different continents (1986–2007). 18th European Congress of Clinical Microbiology and Infectious Diseases. April 2008. Barcelona, Spain.
  • Furuya N & Komano T (2003) NikAB- or NikB-dependent intracellular recombination between tandemly repeated oriT sequences of plasmid R64 in plasmid or single-stranded phage vectors. J Bacteriol 185: 38713877.
  • Furuya N, Nisioka T & Komano T (1991) Nucleotide sequence and functions of the oriT operon in IncI1 plasmid R64. J Bacteriol 173: 22312237.
  • Garcia-Fernandez A, Chiaretto G, Bertini A, Villa L, Fortini D, Ricci A & Carattoli A (2008) Multilocus sequence typing of IncI1 plasmids carrying extended-spectrum beta-lactamases in Escherichia coli and Salmonella of human and animal origin. J Antimicrob Chemoth 61: 12291233.
  • Garcillan-Barcia MP & De La Cruz F (2002) Distribution of IS91 family insertion sequences in bacterial genomes: evolutionary implications. FEMS Microbiol Ecol 42: 303313.
  • Garcillan-Barcia MP, Bernales I, Mendiola MV & De La Cruz F (2002) IS91 rolling-circle transposition. Mobile DNA II (CraigNL, ed.), pp. 891904. ASM Press, Washington, DC.
  • Gilmour MW, Thomson NR, Sanders M, Parkhill J & Taylor DE (2004) The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmid 52: 182202.
  • Golebiewski M, Kern-Zdanowicz I, Zienkiewicz M et al. (2007) Complete nucleotide sequence of the pCTX-M3 plasmid and its involvement in spread of the extended-spectrum beta-lactamase gene blaCTX-M-3. Antimicrob Agents Ch 51: 37893795.
  • Gonzalez V, Santamaria RI, Bustos P et al. (2006) The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. P Natl Acad Sci USA 103: 38343839.
  • Gonzalez-Perez B, Lucas M, Cooke LA, Vyle JS, De La Cruz F & Moncalian G (2007) Analysis of DNA processing reactions in bacterial conjugation by using suicide oligonucleotides. EMBO J 26: 38473857.
  • Grandoso G, Avila P, Cayon A, Hernando MA, Llosa M & De La Cruz F (2000) Two active-site tyrosyl residues of protein TrwC act sequentially at the origin of transfer during plasmid R388 conjugation. J Mol Biol 295: 11631172.
  • Greated A, Lambertsen L, Williams PA & Thomas CM (2002) Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida. Environ Microbiol 4: 856871.
  • Greve B, Jensen S, Brugger K, Zillig W & Garrett RA (2004) Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea 1: 231239.
  • Grohmann E, Muth G & Espinosa M (2003) Conjugative plasmid transfer in gram-positive bacteria. Microbiol Mol Biol R 67: 277301.
  • Guasch A, Lucas M, Moncalian G et al. (2003) Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC. Nat Struct Biol 10: 10021010.
  • Guindon S & Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696704.
  • Guindon S, Lethiec F, Duroux P & Gascuel O (2005) PHYML Online – a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33: W557W559.
  • Gupta A, Vlamakis H, Shoemaker N & Salyers AA (2003) A new Bacteroides conjugative transposon that carries an ermB gene. Appl Environ Microbiol 69: 64556463.
  • Guzman LM & Espinosa M (1997) The mobilization protein, MobM, of the streptococcal plasmid pMV158 specifically cleaves supercoiled DNA at the plasmid oriT. J Mol Biol 266: 688702.
  • Haines AS, Jones K, Cheung M & Thomas CM (2005) The IncP-6 plasmid Rms149 consists of a small mobilizable backbone with multiple large insertions. J Bacteriol 187: 47284738.
  • Haines AS, Cheung M & Thomas CM (2006a) Evidence that IncG (IncP-6) and IncU plasmids form a single incompatibility group. Plasmid 55: 210215.
  • Haines AS, Akhtar P, Stephens ER et al. (2006b) Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype. Microbiology 152: 26892701.
  • Hamilton HL & Dillard JP (2006) Natural transformation of Neisseria gonorrhoeae: from DNA donation to homologous recombination. Mol Microbiol 59: 376385.
  • Hamilton HL, Dominguez NM, Schwartz KJ, Hackett KT & Dillard JP (2005) Neisseria gonorrhoeae secretes chromosomal DNA via a novel type IV secretion system. Mol Microbiol 55: 17041721.
  • Hekman K, Guja K, Larkin C & Schildbach JF (2008) An intrastrand three-DNA-base interaction is a key specificity determinant of F transfer initiation and of F TraI relaxase DNA recognition and cleavage. Nucleic Acids Res 36: 45654572.
  • Herrero A, Mendoza MC, Rodicio R & Rodicio MR (2008) Characterization of pUO-StVR2, a virulence-resistance plasmid evolved from the pSLT virulence plasmid of Salmonella enterica serovar Typhimurium. Antimicrob Agents Ch 52: 45144517.
  • Heuer H, Szczepanowski R, Schneiker S, Puhler A, Top EM & Schluter A (2004) The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1beta group without any accessory genes. Microbiology 150: 35913599.
  • Horinouchi S & Weisblum B (1982) Nucleotide sequence and functional map of pE194, a plasmid that specifies inducible resistance to macrolide, lincosamide, and streptogramin type B antibodies. J Bacteriol 150: 804814.
  • Jones CS, Osborne DJ & Stanley J (1993) Molecular comparison of the IncX plasmids allows division into IncX1 and IncX2 subgroups. J Gen Microbiol 139: 735741.
  • Kim SR & Komano T (1992) Nucleotide sequence of the R721 shufflon. J Bacteriol 174: 70537058.
  • Klockgether J, Reva O, Larbig K & Tummler B (2004) Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C. J Bacteriol 186: 518534.
  • Komano T, Fujitani S, Funayama N, Kanno A & Sakuma K (1990) Physical and genetic analyses of IncI2 plasmid R721: evidence for the presence of shufflon. Plasmid 23: 248251.
  • Kulinska A, Czeredys M, Hayes F & Jagura-Burdzy G (2008) Genomic and functional characterization of the modular broad-host-range RA3 plasmid, the archetype of the IncU group. Appl Environ Microbiol 74: 41194132.
  • Kumar S, Tamura K & Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5: 150163.
  • Kurenbach B, Kopec J, Magdefrau M et al. (2006) The TraA relaxase autoregulates the putative type IV secretion-like system encoded by the broad-host-range Streptococcus agalactiae plasmid pIP501. Microbiology 152: 637645.
  • Kuroda M, Ohta T, Uchiyama I et al. (2001) Whole genome sequencing of meticillin-resistant Staphylococcus aureus. Lancet 357: 12251240.
  • Larkin C, Datta S, Harley MJ, Anderson BJ, Ebie A, Hargreaves V & Schildbach JF (2005) Inter- and intramolecular determinants of the specificity of single-stranded DNA binding and cleavage by the F factor relaxase. Structure 13: 15331544.
  • Lawley TD, Gilmour MW, Gunton JE, Standeven LJ & Taylor DE (2002) Functional and mutational analysis of conjugative transfer region 1 (Tra1) from the IncHI1 plasmid R27. J Bacteriol 184: 21732180.
  • Lawley TD, Gilmour MW, Gunton JE, Tracz DM & Taylor DE (2003) Functional and mutational analysis of conjugative transfer region 2 (Tra2) from the IncHI1 plasmid R27. J Bacteriol 185: 581591.
  • Leplae R, Hebrant A, Wodak SJ & Toussaint A (2004) ACLAME: a CLAssification of mobile genetic elements. Nucleic Acids Res 32: D45D49.
  • Lin TL, Lee CZ, Hsieh PF, Tsai SF & Wang JT (2008) Characterization of integrative and conjugative element ICEKp1-associated genomic heterogeneity in a Klebsiella pneumoniae strain isolated from a primary liver abscess. J Bacteriol 190: 515526.
  • Llosa M, Gomis-Ruth FX, Coll M & De La Cruz F (2002) Bacterial conjugation: a two-step mechanism for DNA transport. Mol Microbiol 45: 18.
  • Lotareva OV, Nezametdinova VZ, Fedorina EA, Poluektova EU, Titok MA & Prozorov AA (2001) High frequency conjugative mobilization in natural strains of Bacillus subtilis, bearing a large plasmid. Genetika 37: 15981603.
  • Lu J, Manchak J, Klimke W, Davidson C, Firth N, Skurray RA & Frost LS (2002) Analysis and characterization of the IncFV plasmid pED208 transfer region. Plasmid 48: 2437.
  • Maeda K, Nojiri H, Shintani M, Yoshida T, Habe H & Omori T (2003) Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676. J Mol Biol 326: 2133.
  • Matson SW & Ragonese H (2005) The F-plasmid TraI protein contains three functional domains required for conjugative DNA strand transfer. J Bacteriol 187: 697706.
  • Miron A, Mukherjee S & Bastia D (1992) Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance. EMBO J 11: 12051216.
  • Monzingo AF, Ozburn A, Xia S, Meyer RJ & Robertus JD (2007) The structure of the minimal relaxase domain of MobA at 2.1 A resolution. J Mol Biol 366: 165178.
  • Murata T, Ohnishi M, Ara T et al. (2002) Complete nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes. J Bacteriol 184: 31943202.
  • Muro-Pastor AM, Kuritz T, Flores E, Herrero A & Wolk CP (1994) Transfer of a genetic marker from a megaplasmid of Anabaena sp. strain PCC 7120 to a megaplasmid of a different Anabaena strain. J Bacteriol 176: 10931098.
  • Navarro F, Mesa RJ, Miro E, Gomez L, Mirelis B & Coll P (2007) Evidence for convergent evolution of CTX-M-14 ESBL in Escherichia coli and its prevalence. FEMS Microbiol Lett 273: 120123.
  • Norman A, Hansen LH, She Q & Sorensen SJ (2008) Nucleotide sequence of pOLA52: a conjugative IncX1 plasmid from Escherichia coli which enables biofilm formation and multidrug efflux. Plasmid 60: 5974.
  • Novais A, Canton R, Moreira R, Peixe L, Baquero F & Coque TM (2007) Emergence and dissemination of Enterobacteriaceae isolates producing CTX-M-1-like enzymes in Spain are associated with IncFII (CTX-M-15) and broad-host-range (CTX-M-1, -3, and -32) plasmids. Antimicrob Agents Ch 51: 796799.
  • Novick RP (1989) Staphylococcal plasmids and their replication [published erratum appears in Annu Rev Microbiol 1990;44:10]. Annu Rev Microbiol 43: 537565.
  • Nunez B & De La Cruz F (2001) Two atypical mobilization proteins are involved in plasmid CloDF13 relaxation. Mol Microbiol 39: 10881099.
  • Nunez B, Avila P & De La Cruz F (1997) Genes involved in conjugative DNA processing of plasmid R6K. Mol Microbiol 24: 11571168.
  • Osborn AM, Da Silva Tatley FM, Steyn LM, Pickup RW & Saunders JR (2000) Mosaic plasmids and mosaic replicons: evolutionary lessons from the analysis of genetic diversity in IncFII-related replicons. Microbiology 146: 22672275.
  • Pansegrau W & Lanka E (1996) Mechanisms of initiation and termination reactions in conjugative DNA processing. Independence of tight substrate binding and catalytic activity of relaxase (TraI) of IncPalpha plasmid RP4. J Biol Chem 271: 1306813076.
  • Pansegrau W, Schoumacher F, Hohn B & Lanka E (1993) Site-specific cleavage and joining of single-stranded DNA by VirD2 protein of Agrobacterium tumefaciens Ti plasmids: analogy to bacterial conjugation. P Natl Acad Sci USA 90: 1153811542.
  • Pansegrau W, Schroder W & Lanka E (1994) Concerted action of three distinct domains in the DNA cleaving-joining reaction catalyzed by relaxase (TraI) of conjugative plasmid RP4. J Biol Chem 269: 27822789.
  • Parker C & Meyer RJ (2007) The R1162 relaxase/primase contains two, type IV transport signals that require the small plasmid protein MobB. Mol Microbiol 66: 252261.
  • Parsons JA, Bannam TL, Devenish RJ & Rood JI (2007) TcpA, an FtsK/SpoIIIE homolog, is essential for transfer of the conjugative plasmid pCW3 in Clostridium perfringens. J Bacteriol 189: 77827790.
  • Paterson ES, More MI, Pillay G et al. (1999) Genetic analysis of the mobilization and leading regions of the IncN plasmids pKM101 and pCU1. J Bacteriol 181: 25722583.
  • Perez-Mendoza D, Lucas M, Munoz S, Herrera-Cervera JA, Olivares J, De La Cruz F & Sanjuan J (2006) The relaxase of the Rhizobium etli symbiotic plasmid shows nic site cis-acting preference. J Bacteriol 188: 74887499.
  • Praszkier J, Wei T, Siemering K & Pittard J (1991) Comparative analysis of the replication regions of IncB, IncK, and IncZ plasmids. J Bacteriol 173: 23932397.
  • Priebe SD & Lacks SA (1989) Region of the streptococcal plasmid pMV158 required for conjugative mobilization. J Bacteriol 171: 47784784.
  • Provvedi R, Manganelli R & Pozzi G (1996) Characterization of conjugative transposon Tn5251 of Streptococcus pneumoniae. FEMS Microbiol Lett 135: 231236.
  • Rawlings DE (2005) The evolution of pTF-FC2 and pTC-F14, two related plasmids of the IncQ-family. Plasmid 53: 137147.
  • Revilla C, Garcillan-Barcia MP, Fernandez-Lopez R et al. (2008) Different pathways to acquiring resistance genes illustrated by the recent evolution of IncW plasmids. Antimicrob Agents Ch 52: 14721480.
  • Rhodes G, Parkhill J, Bird C et al. (2004) Complete nucleotide sequence of the conjugative tetracycline resistance plasmid pFBAOT6, a member of a group of IncU plasmids with global ubiquity. Appl Environ Microbiol 70: 74977510.
  • Rice LB, Carias LL, Marshall SH, Hutton-Thomas R & Rudin S (2007) Characterization of Tn5386, a Tn916-related mobile element. Plasmid 58: 6167.
  • Roberts AP, Johanesen PA, Lyras D, Mullany P & Rood JI (2001) Comparison of Tn5397 from Clostridium difficile, Tn916 from Enterococcus faecalis and the CW459tet(M) element from Clostridium perfringens shows that they have similar conjugation regions but different insertion and excision modules. Microbiology 147: 12431251.
  • Rocco JM & Churchward G (2006) The integrase of the conjugative transposon Tn916 directs strand- and sequence-specific cleavage of the origin of conjugal transfer, oriT, by the endonuclease Orf20. J Bacteriol 188: 22072213.
  • Romo M, Goicoechea P, Coque TM, Baquero F, De La Cruz F, Martínez-Martínez L & Francia MV (2008) Molecular Typing of the Resistance Plasmids of a VRE Nosocomial Outbreak in Spain. 18th European Congress of Clinical Microbiology and Infectious Diseases. April 2008. Barcelona, Spain.
  • Rotger R & Casadesus J (1999) The virulence plasmids of Salmonella. Int Microbiol 2: 177184.
  • Salgado-Pabon W, Jain S, Turner N, Van Der Does C & Dillard JP (2007) A novel relaxase homologue is involved in chromosomal DNA processing for type IV secretion in Neisseria gonorrhoeae. Mol Microbiol 66: 930947.
  • Scheiffele P, Pansegrau W & Lanka E (1995) Initiation of Agrobacterium tumefaciens T-DNA processing. Purified proteins VirD1 and VirD2 catalyze site- and strand-specific cleavage of superhelical T-border DNA in vitro. J Biol Chem 270: 12691276.
  • Schneiker S, Keller M, Droge M, Lanka E, Puhler A & Selbitschka W (2001) The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa. Nucleic Acids Res 29: 51695181.
  • Schubert S, Dufke S, Sorsa J & Heesemann J (2004) A novel integrative and conjugative element (ICE) of Escherichia coli: the putative progenitor of the Yersinia high-pathogenicity island. Mol Microbiol 51: 837848.
  • Shen P, Jiang Y, Zhou Z, Zhang J, Yu Y & Li L (2008) Complete nucleotide sequence of pKP96, a 67850 bp multiresistance plasmid encoding qnrA1, aac(6′)-Ib-cr and blaCTX-M-24 from Klebsiella pneumoniae. J Antimicrob Chemoth 62: 12521256.
  • Sherburne CK, Lawley TD, Gilmour MW et al. (2000) The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer. Nucleic Acids Res 28: 21772186.
  • Shintani M, Nojiri H, Yoshida T, Habe H & Omori T (2003) Carbazole/dioxin-degrading car gene cluster is located on the chromosome of Pseudomonas stutzeri strain OM1 in a form different from the simple transposition of Tn4676. Biotechnol Lett 25: 12551261.
  • Shon M, Germino J & Bastia D (1982) The nucleotide sequence of the replication origin beta of the plasmid R6K. J Biol Chem 257: 1382313827.
  • Smith CJ & Parker AC (1998) The transfer origin for Bacteroides mobilizable transposon Tn4555 is related to a plasmid family from gram-positive bacteria. J Bacteriol 180: 435439.
  • Strauch E, Goelz G, Knabner D, Konietzny A, Lanka E & Appel B (2003) A cryptic plasmid of Yersinia enterocolitica encodes a conjugative transfer system related to the regions of CloDF13 Mob and IncX Pil. Microbiology 149: 28292845.
  • Szpirer CY, Faelen M & Couturier M (2001) Mobilization function of the pBHR1 plasmid, a derivative of the broad-host-range plasmid pBBR1. J Bacteriol 183: 21012110.
  • Tauch A, Schneiker S, Selbitschka W et al. (2002) The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere. Microbiology 148: 16371653.
  • Thompson JD, Higgins DG & Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 46734680.
  • Thorsted PB, Macartney DP, Akhtar P et al. (1998) Complete sequence of the IncPbeta plasmid R751: implications for evolution and organisation of the IncP backbone. J Mol Biol 282: 969990.
  • Tomita H, Pierson C, Lim SK, Clewell DB & Ike Y (2002) Possible connection between a widely disseminated conjugative gentamicin resistance (pMG1-like) plasmid and the emergence of vancomycin resistance in Enterococcus faecium. J Clin Microbiol 40: 33263333.
  • Tomita H, Tanimoto K, Hayakawa S, Morinaga K, Ezaki K, Oshima H & Ike Y (2003) Highly conjugative pMG1-like plasmids carrying Tn1546-like transposons that encode vancomycin resistance in Enterococcus faecium. J Bacteriol 185: 70247028.
  • Tschape H & Tietze E (1980) Genetic and molecular characterization of R plasmids incompatible with R387 (IncK). J Gen Microbiol 118: 515521.
  • Van Der Meer JR & Sentchilo V (2003) Genomic islands and the evolution of catabolic pathways in bacteria. Curr Opin Biotechnol 14: 248254.
  • Van Zyl LJ, Deane SM & Rawlings DE (2003) Analysis of the mobilization region of the broad-host-range IncQ-like plasmid pTC-F14 and its ability to interact with a related plasmid, pTF-FC2. J Bacteriol 185: 61046111.
  • Varsaki A, Lucas M, Afendra AS, Drainas C & De La Cruz F (2003) Genetic and biochemical characterization of MbeA, the relaxase involved in plasmid ColE1 conjugative mobilization. Mol Microbiol 48: 481493.
  • Vedantam G, Knopf S & Hecht DW (2006) Bacteroides fragilis mobilizable transposon Tn5520 requires a 71 base pair origin of transfer sequence and a single mobilization protein for relaxosome formation during conjugation. Mol Microbiol 59: 288300.
  • Villa L, Pezzella C, Tosini F, Visca P, Petrucca A & Carattoli A (2000) Multiple-antibiotic resistance mediated by structurally related IncL/M plasmids carrying an extended-spectrum beta-lactamase gene and a class 1 integron. Antimicrob Agents Ch 44: 29112914.
  • Waldor MK, Tschape H & Mekalanos JJ (1996) A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139. J Bacteriol 178: 41574165.
  • Welch TJ, Fricke WF, McDermott PF et al. (2007) Multiple antimicrobial resistance in plague: an emerging public health risk. PLoS ONE 2: e309.
  • Woese CR, Kandler O & Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. P Natl Acad Sci USA 87: 45764579.
  • Womble DD & Rownd RH (1988) Genetic and physical map of plasmid NR1: comparison with other IncFII antibiotic resistance plasmids. Microbiol Rev 52: 433451.
  • Zambryski P, Tempe J & Schell J (1989) Transfer and function of T-DNA genes from agrobacterium Ti and Ri plasmids in plants. Cell 56: 193201.
  • Zou X, Caufield PW, Li Y & Qi F (2001) Complete nucleotide sequence and characterization of pUA140, a cryptic plasmid from Streptococcus mutans. Plasmid 46: 7785.