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References

  • 1
    Ogawa H, Gomi T & Fujioka M (2000) Serine hydroxymethyltransferase and threonine aldolase: are they identical? Int J Biochem Cell Biol 32, 289301.
  • 2
    Schirch V & Szebenyi DM (2005) Serine hydroxymethyltransferase revisited. Curr Opin Chem Biol 9, 482487.
  • 3
    Florio R, di Salvo ML, Vivoli M & Contestabile R (2011) Serine hydroxymethyltransferase: a model enzyme for mechanistic, structural, and evolutionary studies. Biochim Biophys Acta 1814, 14891496.
  • 4
    Szebenyi DM, Musayev FN, di Salvo ML, Safo MK & Schirch V (2004) Serine hydroxymethyltransferase: role of Glu75 and evidence that serine is cleaved by a retroaldol mechanism. Biochemistry 43, 68656876.
  • 5
    Schirch L & Gross T (1968) Serine transhydroxymethylase. Identification as the threonine and allothreonine aldolases. J Biol Chem 243, 56515655.
  • 6
    Webb HK & Matthews RG (1995) 4-Chlorothreonine is substrate, mechanistic probe, and mechanism-based inactivator of serine hydroxymethyltransferase. J Biol Chem 270, 1720417209.
  • 7
    Ulevitch RJ & Kallen RG (1977) Purification and characterization of pyridoxal 5′-phosphate dependent serine hydroxymethylase from lamb liver and its action upon β-phenylserines. Biochemistry 16, 53425350.
  • 8
    Rao JV, Prakash V, Rao NA & Savithri HS (2000) The role of Glu74 and Tyr82 in the reaction catalyzed by sheep liver cytosolic serine hydroxymethyltransferase. Eur J Biochem 267, 59675976.
  • 9
    Bhavani BS, Rajaram V, Bisht S, Kaul P, Prakash V, Murthy MR, Appaji Rao N & Savithri HS (2008) Importance of tyrosine residues of Bacillus stearothermophilus serine hydroxymethyltransferase in cofactor binding and l-allo-Thr cleavage. FEBS J 275, 46064619.
  • 10
    Jagath JR, Sharma B, Rao NA & Savithri HS (1997) The role of His-134, -147, and -150 residues in subunit assembly, cofactor binding, and catalysis of sheep liver cytosolic serine hydroxymethyltransferase. J Biol Chem 272, 2435524362.
  • 11
    Rajaram V, Bhavani BS, Kaul P, Prakash V, Appaji Rao N, Savithri HS & Murthy MR (2007) Structure determination and biochemical studies on Bacillus stearothermophilus E53Q serine hydroxymethyltransferase and its complexes provide insights on function and enzyme memory. FEBS J 274, 41484160.
  • 12
    Kawasumi T, Igarashi Y, Kodama T & Minoda Y (1980) Isolation of strictly thermophilic and obligately autotrophic hydrogen bacteria. Agric Biol Chem 44, 19851986.
  • 13
    Kawasumi T, Igarashi Y, Kodama T & Minoda Y (1984) Hydrogenobacter thermophilus gen. nov., sp. nov., an extremely thermophilic, aerobic, hydrogen-oxidizing bacterium. Int J Syst Bacteriol 34, 510.
  • 14
    Arai H, Kanbe H, Ishii M & Igarashi Y (2010) Complete genome sequence of the thermophilic, obligately chemolithoautotrophic hydrogen-oxidizing bacterium Hydrogenobacter thermophilus TK-6. J Bacteriol 192, 26512652.
  • 15
    Yamamoto M, Arai H, Ishii M & Igarashi Y (2003) Characterization of two different 2-oxoglutarate:ferredoxin oxidoreductases from Hydrogenobacter thermophilus TK-6. Biochem Biophys Res Commun 312, 12971302.
  • 16
    Uchiyama S, Hasegawa J, Tanimoto Y, Moriguchi H, Mizutani M, Igarashi Y, Sambongi Y & Kobayashi Y (2002) Thermodynamic characterization of variants of mesophilic cytochrome c and its thermophilic counterpart. Protein Eng 15, 455462.
  • 17
    Contestabile R, Angelaccio S, Bossa F, Wright HT, Scarsdale N, Kazanina G & Schirch V (2000) Role of tyrosine 65 in the mechanism of serine hydroxymethyltransferase. Biochemistry 39, 74927500.
  • 18
    Kameya M, Ikeda T, Nakamura M, Arai H, Ishii M & Igarashi Y (2007) A novel ferredoxin-dependent glutamate synthase from the hydrogen-oxidizing chemoautotrophic bacterium Hydrogenobacter thermophilus TK-6. J Bacteriol 189, 28052812.
  • 19
    Kameya M, Arai H, Ishii M & Igarashi Y (2010) Purification of three aminotransferases from Hydrogenobacter thermophilus TK-6 – novel types of alanine or glycine aminotransferase: enzymes and catalysis. FEBS J 277, 18761885.
  • 20
    Angelaccio S, Chiaraluce R, Consalvi V, Buchenau B, Giangiacomo L, Bossa F & Contestabile R (2003) Catalytic and thermodynamic properties of tetrahydromethanopterin-dependent serine hydroxymethyltransferase from Methanococcus jannaschii. J Biol Chem 278, 4178941797.
  • 21
    Trivedi V, Gupta A, Jala VR, Saravanan P, Rao GS, Rao NA, Savithri HS & Subramanya HS (2002) Crystal structure of binary and ternary complexes of serine hydroxymethyltransferase from Bacillus stearothermophilus: insights into the catalytic mechanism. J Biol Chem 277, 1716117169.
  • 22
    Contestabile R, Paiardini A, Pascarella S, di Salvo ML, D’Aguanno S & Bossa F (2001) l-Threonine aldolase, serine hydroxymethyltransferase and fungal alanine racemase. A subgroup of strictly related enzymes specialized for different functions. Eur J Biochem 268, 65086525.
  • 23
    Chaves AC, Fernandez M, Lerayer AL, Mierau I, Kleerebezem M & Hugenholtz J (2002) Metabolic engineering of acetaldehyde production by Streptococcus thermophilus. Appl Environ Microbiol 68, 56565662.
  • 24
    Vidal L, Calveras J, Clapes P, Ferrer P & Caminal G (2005) Recombinant production of serine hydroxymethyl transferase from Streptococcus thermophilus and its preliminary evaluation as a biocatalyst. Appl Microbiol Biotechnol 68, 489497.
  • 25
    McNeil JB, McIntosh EM, Taylor BV, Zhang FR, Tang S & Bognar AL (1994) Cloning and molecular characterization of three genes, including two genes encoding serine hydroxymethyltransferases, whose inactivation is required to render yeast auxotrophic for glycine. J Biol Chem 269, 91559165.
  • 26
    Liu JQ, Nagata S, Dairi T, Misono H, Shimizu S & Yamada H (1997) The GLY1 gene of Saccharomyces cerevisiae encodes a low-specific l-threonine aldolase that catalyzes cleavage of l-allo-threonine and l-threonine to glycine – expression of the gene in Escherichia coli and purification and characterization of the enzyme. Eur J Biochem 245, 289293.
  • 27
    Monschau N, Stahmann KP, Sahm H, McNeil JB & Bognar AL (1997) Identification of Saccharomyces cerevisiae GLY1 as a threonine aldolase: a key enzyme in glycine biosynthesis. FEMS Microbiol Lett 150, 5560.
  • 28
    Pai VR, Rajaram V, Bisht S, Bhavani BS, Rao NA, Murthy MR & Savithri HS (2009) Structural and functional studies of Bacillus stearothermophilus serine hydroxymethyltransferase: the role of Asn(341), Tyr(60) and Phe(351) in tetrahydrofolate binding. Biochem J 418, 635642.
  • 29
    Dennington R, Keith T & Millam J (2009) GaussView, version 5. Semichem Inc, Shawnee Mission, KS.
  • 30
    Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA et al. (2009) Gaussian 09, Revision A.2. Gaussian, Inc, Wallingford, CT.
  • 31
    Reed AE, Weinstock RB & Weinhold F (1985) Natural population analysis. J Chem Phys 83, 735746.
  • 32
    Heinrikson RL & Meredith SC (1984) Amino acid analysis by reverse-phase high-performance liquid chromatography: precolumn derivatization with phenylisothiocyanate. Anal Biochem 136, 6574.
  • 33
    Paz MA, Blumenfeld OO, Rojkind M, Henson E, Furfine C & Gallop PM (1965) Determination of carbonyl compounds with N-methyl benzothiazolone hydrazone. Arch Biochem Biophys 109, 548559.
  • 34
    Kraulis PJ (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24, 946950.