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References

  • Andersen KL, CollinsK (2012) Several RNase T2 enzymes function in induced tRNA and rRNA turnover in the ciliate Tetrahymena. Mol. Biol. Cell 23, 3644.
  • Avin-WittenbergT, Honig A, GaliliG (2012) Variations on a theme: Plant autophagy in comparison to yeast and mammals. Protoplasma 249, 285299.
  • BainsM, Heidenreich KA (2009) Live-cell imaging of autophagy induction and autophagosome-lysosome fusion in primary cultured neurons. Methods Enzymol. 453, 145158.
  • BariR, Jones JD (2009) Role of plant hormones in plant defence responses. Plant Mol. Biol. 69, 473488.
  • BariolaPA, MacIntoshGC, GreenPJ (1999) Regulation of s-like ribonuclease levels in Arabidopsis. Antisense inhibition of RNS1 or RNS2 elevates anthocyanin accumulation. Plant Physiol. 119, 331342.
  • BasshamDC (2007) Plant autophagy—more than a starvation response. Curr. Opin. Plant Biol. 10, 587593.
  • Bassham DC (2009) Function and regulation of macroautophagy in plants. Biochim. Biophys. Acta 1793, 13971403.
  • BaumbergerN, BaulcombeDC (2005) Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc. Natl. Acad. Sci. USA 102, 1192811933.
  • BeersEP (1997) Programmed cell death during plant growth and development. Cell Death Differ. 4, 649661.
  • BehrendsC, Fulda S (2012) Receptor proteins in selective autophagy. Int. J. Cell Biol. 2012, 673290.
  • BjorkoyG, Lamark T, Brech A, Outzen H, Perander M, Overvatn A, Stenmark H, Johansen T (2005) p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death. J. Cell Biol. 171, 603614.
  • BrownEJ, Albers MW, Shin TB, Ichikawa K, Keith CT, Lane WS, Schreiber SL (1994) A mammalian protein targeted by G1-arresting rapamycin-receptor complex. Nature 369, 756758.
  • Calvo-Garrido J, Carilla-Latorre S, Mesquita A, Escalante R (2011) A proteolytic cleavage assay to monitor autophagy in Dictyostelium discoideum. Autophagy 7, 10631068.
  • CampomenosiP, Salis S, Lindqvist C, Mariani D, Nordström T, Acquati F, TaramelliR (2006) Characterization of RNASET2, the first human member of the Rh/T2/S family of glycoproteins. Arch. Biochem. Biophys. 449, 1726.
  • ChenMH, Liu LF, Chen YR, Wu HK, YuSM (1994) Expression of alpha-amylases, Caarbohydrate-metabolism, and autophagy in cultured rice cells is coordinately regulated by sugar nutrient. Plant J. 6, 625636.
  • Chiba A, Ishida H, Nishizawa NK, Makino A, Mae T (2003) Exclusion of ribulose-1,5-bisphosphate carboxylase/oxygenase from chloroplasts by specific bodies in naturally senescing leaves of wheat. Plant Cell Physiol. 44, 914921.
  • ConnS, Zhang W, Franco C (2003) Anthocyanic vacuolar inclusions (AVIs) selectively bind acylated anthocyanins in Vitis vinifera L. (grapevine) suspension culture. Biotechnol. Lett. 25, 835839.
  • ContentoAL, Xiong Y, Bassham DC (2005) Visualization of autophagy in Arabidopsis using the fluorescent dye monodansylcadaverine and a GFP–AtATG8e fusion protein. Plant J. 42, 598608.
  • CorsiL, Avallone R, Geminiani E, Cosenza F, Venturini I, BaraldiM (2004) Peripheral benzodiazepine receptors in potatoes (Solanum tuberosum). Biochem. Biophys. Res. Commun. 313, 6266.
  • DerrienB, Baumberger N, Schepetilnikov M, Viotti C, De Cillia J, Ziegler-Graff V, Isono E, Schumacher K, Genschik P (2012) Degradation of the antiviral component ARGONAUTE1 by the autophagy pathway. Proc. Natl. Acad. Sci. USA 109, 1594215946.
  • Doelling JH, Walker JM, Friedman EM, Thompson AR, Vierstra RD (2002) The APG8/12-activating enzyme APG7 is required for proper nutrient recycling and senescence in Arabidopsis thaliana. J. Biol. Chem. 277, 3310533114.
  • Eskelinen EL, Reggiori F, Baba M, Kovács AL, SeglenPO (2011) Seeing is believing: The impact of electron microscopy on autophagy research. Autophagy 7, 935956.
  • EvansJR (1989) Photosynthesis and nitrogen relationships in leaves of C3 plants. Oecologia 78, 919.
  • ExnerN, Treske B, Paquet D, Holmstrom K, Schiesling C, Gispert S, Carballo-Carbajal I, Berg D, Hoepken HH, Gasser T, Kruger R, Winklhofer KF, Vogel F, Reichert AS, Auburger G, KahlePJ, Schmid B, Haass C (2007) Loss-of-function of human PINK1 results in mitochondrial pathology and can be rescued by parkin. J. Neurosci. 27, 1241312418.
  • FennoySL, Jayachandran S, Bailey-SerresJ (1997) RNase activities are reduced concomitantly with conservation of total cellular RNA and ribosomes in O2-deprived seedling roots of maize. Plant Physiol. 115, 11091117.
  • FilimonenkoM, Isakson P, Finley KD, Anderson M, Jeong H, Melia TJ, Bartlett BJ, Myers KM, Birkeland HC, Lamark T, Krainc D, Brech A, Stenmark H, Simonsen A, Yamamoto A (2010) The selective macroautophagic degradation of aggregated proteins requires the PI3P-binding protein Alfy. Mol. Cell 38, 265279.
  • Gould KS (2004) Nature's swiss army knife: The diverse protective roles of anthocyanins in leaves. J. Biomed. Biotechnol. 2004, 314320.
  • GrotewoldE (2006) The genetics and biochemistry of floral pigments. Annu. Rev. Plant Biol. 57, 761780.
  • Guillaumot D, Guillon S, Deplanque T, Vanhee C, Gumy C, Masquelier D, Morsomme P, Batoko H (2009) The Arabidopsis TSPO-related protein is a stress and abscisic acid-regulated, endoplasmic reticulum-Golgi-localized membrane protein. Plant J. 60, 242256.
  • GuptaHS (1988) Vacuolar autophagy – apparent dilution and elimination of cytoplasmic organelles in acridine orange-treated plant-cells. Caryologia 41, 347359.
  • Han S, Yu B, Wang Y, LiuY (2011) Role of plant autophagy in stress response. Protein Cell 2, 784791.
  • HanadaT, Noda NN, Satomi Y, Ichimura Y, Fujioka Y, Takao T, Inagaki F, OhsumiY (2007) The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy. J. Biol. Chem. 282, 3729837302.
  • Hanaoka H, Noda T, Shirano Y, Kato T, Hayashi H, Shibata D, Tabata S, OhsumiY (2002) Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol. 129, 11811193.
  • HaudN, Kara F, Diekmann S, Henneke M, Willer JR, Hillwig MS, Gregg RG, MacIntosh GC, Gärtner J, Alia A, Hurlstone AFL (2011) rnaset2 mutant zebrafish model familial cystic leukoencephalopathy and reveal a role for RNase T2 in degrading ribosomal RNA. Proc. Natl. Acad. Sci. USA 108, 10991103.
  • HaywardAP, Dinesh-Kumar SP (2011) What can plant autophagy do for an innate immune response Ann. Rev. Phytopat. 49, 557576.
  • Hillwig MS, Contento AL, Meyer A, Ebany D, Bassham DC, MacintoshGC (2011) RNS2, a conserved member of the RNase T2 family, is necessary for ribosomal RNA decay in plants. Proc. Natl. Acad. Sci. USA 108, 10931098.
  • HirotaY, Aoki Y, Kanki T (2011) Mitophagy: Selective degradation of mitochondria by autophagy. Seikagaku 83, 126130.
  • Hofius D, Munch D, Bressendorff S, Mundy J, Petersen M (2011) Role of autophagy in disease resistance and hypersensitive response-associated cell death. Cell Death Differ. 18, 12571262.
  • Hofius D, Schultz-Larsen T, Joensen J, Tsitsigiannis DI, Petersen NHT, Mattsson O, Jorgensen LB, JonesJDG, Mundy J, PetersenM (2009) Autophagic components contribute to hypersensitive cell death in Arabidopsis. Cell 137, 773783.
  • Honig A, Avin-Wittenberg T, Ufaz S, GaliliG (2012) A new type of compartment, defined by plant-specific Atg8-interacting proteins, is induced upon exposure of Arabidopsis plants to carbon starvation. Plant Cell 24, 288303.
  • HsiehLC, Lin SI, Kuo HF, ChiouTJ (2010) Abundance of tRNA-derived small RNAs in phosphate-starved Arabidopsis roots. Plant Signal. Behav. 5, 537539.
  • Ichimura Y, Kirisako T, Takao T, Satomi Y, Shimonishi Y, Ishihara N, Mizushima N, Tanida I, Kominami E, Ohsumi M, Noda T, OhsumiY (2000) A ubiquitin-like system mediates protein lipidation. Nature 408, 488492.
  • Ichimura Y, Kumanomidou T, Sou YS, Mizushima T, Ezaki J, Ueno T, Kominami E, Yamane T, Tanaka K, KomatsuM (2008) Structural basis for sorting mechanism of p62 in selective autophagy. J. Biol. Chem. 283, 2284722857.
  • InoueY, Suzuki T, Hattori M, Yoshimoto K, Ohsumi Y, Moriyasu Y (2006) AtATG genes, homologs of yeast autophagy genes, are involved in constitutive autophagy in Arabidopsis root tip cells. Plant Cell Physiol. 47, 16411652.
  • Ishida H, Yoshimoto K, Izumi M, Reisen D, Yano Y, Makino A, Ohsumi Y, Hanson MR, MaeT (2008) Mobilization of rubisco and stroma-localized fluorescent proteins of chloroplasts to the vacuole by an ATG gene-dependent autophagic process. Plant Physiol. 148, 142155.
  • Izumi M, Wada S, Makino A, Ishida H (2010) The autophagic degradation of chloroplasts via rubisco-containing bodies is specifically linked to leaf carbon status but not nitrogen status in Arabidopsis. Plant Physiol. 154, 11961209.
  • Johansen T, Lamark T (2011) Selective autophagy mediated by autophagic adapter proteins. Autophagy 7, 279296.
  • John F, Roffler S, Wicker T, RingliC (2011) Plant TOR signaling components. Plant Signal. Behav. 6, 17001705.
  • JoubertPE, Meiffren G, Gregoire IP, Pontini G, Richetta C, Flacher M, Azocar O, Vidalain PO, Vidal M, Lotteau V, Codogno P, Rabourdin-Combe C, FaureM (2009) Autophagy induction by the pathogen receptor CD46. Cell Host Microbe. 6, 354366.
  • JungCH, Ro SH, Cao J, Otto NM, KimDH (2010) mTOR regulation of autophagy. FEBS Lett. 584, 12871295.
  • KankiT, Wang K, Cao Y, Baba M, Klionsky DJ (2009) Atg32 is a mitochondrial protein that confers selectivity during mitophagy. Dev. Cell 17, 98109.
  • KantP, Gordon M, Kant S, Zolla G, Davydov O, Heimer YM, Chalifa-Caspi V, Shaked R, Barak S (2008) Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses. Plant Cell Environ. 31, 697714.
  • Kirisako T, Baba M, Ishihara N, Miyazawa K, Ohsumi M, Yoshimori T, Noda T, OhsumiY (1999) Formation process of autophagosome is traced with Apg8/Aut7p in yeast. J. Cell Biol. 147, 435446.
  • Kirisako T, Ichimura Y, Okada H, Kabeya Y, Mizushima N, Yoshimori T, Ohsumi M, Takao T, Noda T, OhsumiY (2000) The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway. J. Cell Biol. 151, 263275.
  • Kirkin V, Lamark T, Sou YS, Bjorkoy G, Nunn JL, Bruun JA, Shvets E, McEwan DG, Clausen TH, Wild P, Bilusic I, Theurillat JP, Overvatn A, Ishii T, Elazar Z, KomatsuM, Dikic I, JohansenT (2009) A role for NBR1 in autophagosomal degradation of ubiquitinated substrates. Mol. Cell 33, 505516.
  • Klionsky DJ (2005) Autophagy. Curr. Biol. 15, 282283.
  • KraftC, Deplazes A, Sohrmann M, Peter M (2008) Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease. Nat. Cell Biol. 10, 602610.
  • Kraft C, PeterM (2008) Is the Rsp5 ubiquitin ligase involved in the regulation of ribophagy Autophagy 4, 838840.
  • Kraft C, Reggiori F, PeterM (2009) Selective types of autophagy in yeast. Bba-Mol. Cell Res. 1793, 14041412.
  • KristensenAR, Schandorff S, Hoyer-Hansen M, Nielsen MO, Jaattela M, Dengjel J, AndersenJS (2008) Ordered organelle degradation during starvation-induced autophagy. Mol. Cell Proteomics 7, 24192428.
  • KrsticR (1985) Formation of autophagosomes in the pinealocytes of the rat and Mongolian Gerbil (meriones-unguiculatus) – a lysosome wrapping mechanism. Cell Tissue Res. 241, 677681.
  • Kwon SI, Cho HJ, ParkOK (2010) Role of Arabidopsis RabG3b and autophagy in tracheary element differentiation. Autophagy 6, 11871189.
  • Lacapere JJ, Delavoie F, Li H, Peranzi G, Maccario J, Papadopoulos V, Vidic B (2001) Structural and functional study of reconstituted peripheral benzodiazepine receptor. Biochem. Biophys. Res. Commun. 284, 536541.
  • Lafontaine DLJ (2010) A ‘garbage can’ for ribosomes: How eukaryotes degrade their ribosomes. Trends Biochem. Sci. 35, 267277.
  • LaiZ, Wang F, Zheng Z, Fan B, ChenZ (2011) A critical role of autophagy in plant resistance to necrotrophic fungal pathogens. Plant J. 66, 953968.
  • Lamark T, Perander M, Outzen H, Kristiansen K, Overvatn A, Michaelsen E, Bjorkoy G, JohansenT (2003) Interaction codes within the family of mammalian Phox and Bem1p domain-containing proteins. J. Biol. Chem. 278, 3456834581.
  • LaschP, Petras T, Ullrich O, Backmann J, Naumann D, GruneT (2001) Hydrogen peroxide-induced structural alterations of RNAse A. J. Biol. Chem. 276, 94929502.
  • LenzHD, Haller E, Melzer E, Kober K, Wurster K, Stahl M, Bassham DC, Vierstra RD, Parker JE, Bautor J, Molina A, Escudero V, Shindo T, van der Hoorn RA, Gust AA, Nurnberger T (2011) Autophagy differentially controls plant basal immunity to biotrophic and necrotrophic pathogens. Plant J. 66, 818830.
  • Levine B, DereticV (2007) Unveiling the roles of autophagy in innate and adaptive immunity. Nat. Rev. Immunol. 7, 767777.
  • Levine B, Kroemer G (2008) Autophagy in the pathogenesis of disease. Cell 132, 2742.
  • LewandowskaM, Wawrzynska A, Moniuszko G, Lukomska J, Zientara K, Piecho M, Hodurek P, Zhukov I, Liszewska F, Nikiforova V, Sirko A (2010) A contribution to identification of novel regulators of plant response to sulfur deficiency: Characteristics of a tobacco gene UP9C, its protein product and the effects of UP9C silencing. Mol. Plant 3, 347360.
  • LiF, Vierstra RD (2012) Autophagy: A multifaceted intracellular system for bulk and selective recycling. Trends Plant Sci. 9, 526537.
  • LiuY, BasshamDC (2010) TOR is a negative regulator of autophagy in Arabidopsis thaliana. PloS ONE 5, e11883.
  • LiuY, BasshamDC (2012) Autophagy: Pathways for self-eating in plant cells. Annu. Rev. Plant Biol. 63, 215237.
  • LiuY, Schiff M, Czymmek K, Talloczy Z, Levine B, Dinesh-Kumar SP (2005) Autophagy regulates programmed cell death during the plant innate immune response. Cell 121, 567577.
  • LoewithR, HallMN (2011) Target of rapamycin (TOR) in nutrient signaling and growth control. Genetics 189, 11771201.
  • LuhtalaN, Parker R (2012) Structure-function analysis of Rny1 in tRNA cleavage and growth inhibition. PloS ONE 7, e41111.
  • MarrsKA, Alfenito MR, Lloyd AM, WalbotV (1995) A glutathione S-transferase involved in vacuolar transfer encoded by the maize gene Bronze-2. Nature 375, 397400.
  • MatsumotoG, Wada K, Okuno M, Kurosawa M, Nukina N (2011) Serine 403 phosphorylation of p62/SQSTM1 regulates selective autophagic clearance of ubiquitinated proteins. Mol. Cell 44, 279289.
  • MeijerWH, van der KleiIJ, Veenhuis M, KielJA (2007) ATG genes involved in non-selective autophagy are conserved from yeast to man, but the selective Cvt and pexophagy pathways also require organism-specific genes. Autophagy 3, 106116.
  • MenandB, Desnos T, Nussaume L, Berger F, Bouchez D, Meyer C, Robaglia C (2002) Expression and disruption of the Arabidopsis TOR (target of rapamycin) gene. Proc. Natl. Acad. Sci. USA 99, 64226427.
  • MichiorriS, Gelmetti V, Giarda E, Lombardi F, Romano F, Marongiu R, Nerini-Molteni S, SaleP, Vago R, Arena G, Torosantucci L, Cassina L, Russo MA, Dallapiccola B, Valente EM, CasariG (2010) The Parkinson-associated protein PINK1 interacts with Beclin1 and promotes autophagy. Cell Death Differ. 17, 962974.
  • MizushimaN, Yamamoto A, Matsui M, Yoshimori T, Ohsumi Y (2004) In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker. Mol. Biol. Cell 15, 11011111.
  • MoriyasuY, OhsumiY (1996) Autophagy in tobacco suspension-cultured cells in response to sucrose starvation. Plant Physiol. 111, 12331241.
  • MoscatJ, Diaz-Meco MT (2009) p62 at the crossroads of autophagy, apoptosis, and cancer. Cell 137, 10011004.
  • NakatogawaH, Suzuki K, Kamada Y, OhsumiY (2009) Dynamics and diversity in autophagy mechanisms: Lessons from yeast. Nat. Rev. Mol. Cell Biol. 10, 458467.
  • NarendraD, Tanaka A, Suen DF, YouleRJ (2008) Parkin is recruited selectively to impaired mitochondria and promotes their autophagy. J. Cell Biol. 183, 795803.
  • Nezis IP, Stenmark H (2012) p62 at the interface of autophagy, oxidative stress signaling, and cancer. Antioxid. Redox. Signal. 17, 786793.
  • Niwa Y, Kato T, Tabata S, Seki M, Kobayashi M, Shinozaki K, Moriyasu Y (2004) Disposal of chloroplasts with abnormal function into the vacuole in Arabidopsis thaliana cotyledon cells. Protoplasma 223, 229232.
  • NodaNN, Ohsumi Y, InagakiF (2010) Atg8-family interacting motif crucial for selective autophagy. FEBS Lett. 584, 13791385.
  • NodaT, Ohsumi Y (1998) Tor, a phosphatidylinositol kinase homologue, controls autophagy in yeast. J. Biol. Chem. 273, 39633966.
  • NovakI, Kirkin V, McEwan DG, Zhang J, Wild P, Rozenknop A, Rogov V, Lohr F, Popovic D, Occhipinti A, Reichert AS, Terzic J, Dotsch V, Ney PA, DikicI (2010) Nix is a selective autophagy receptor for mitochondrial clearance. EMBO Rep. 11, 4551.
  • OgawaM, Yoshikawa Y, Kobayashi T, Mimuro H, Fukumatsu M, Kiga K, Piao Z, AshidaH, YoshidaM, Kakuta S, KoyamaT, GotoY, Nagatake T, Nagai S, Kiyono H, KawalecM, Reichhart JM, Sasakawa C (2011) A Tecpr1-dependent selective autophagy pathway targets bacterial pathogens. Cell Host Microbe. 9, 376389.
  • OldhamS, Montagne J, Radimerski T, Thomas G, HafenE (2000) Genetic and biochemical characterization of dTOR, the Drosophila homolog of the target of rapamycin. Genes Develop. 14, 26892694.
  • Ossareh-Nazari B, Bonizec M, Cohen M, Dokudovskaya S, Delalande F, Schaeffer C, Van Dorsselaer A, DargemontC (2010) Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy. EMBO Rep. 11, 548554.
  • PankivS, ClausenTH, Lamark T, Brech A, BruunJA, Outzen H, Overvatn A, Bjorkoy G, Johansen T (2007) p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy. J. Biol. Chem. 282, 2413124145.
  • PapadopoulosV, Baraldi M, Guilarte TR, Knudsen TB, Lacapere JJ, Lindemann P, Norenberg MD, Nutt D, Weizman A, Zhang MR, Gavish M (2006) Translocator protein (18kDa): New nomenclature for the peripheral-type benzodiazepine receptor based on its structure and molecular function. Trends Pharmacol. Sci. 27, 402409.
  • PatelS, Dinesh-Kumar SP (2008) Arabidopsis ATG6 is required to limit the pathogen-associated cell death response. Autophagy 4, 2027.
  • PaulS, Kashyap AK, Jia W, He YW, Schaefer BC (2012) Selective autophagy of the adaptor protein Bcl10 modulates T Cell receptor activation of NF-kappaB. Immunity 36, 947958.
  • Perez-Perez ME, Crespo JL (2010) Autophagy in the model alga Chlamydomonas reinhardtii. Autophagy 6, 562563.
  • Perez-Perez, ME, Florencio FJ, CrespoJL (2010) Inhibition of target of rapamycin signaling and stress activate autophagy in Chlamydomonas reinhardtii. Plant Physiol. 152, 18741888.
  • PonpuakM, Davis AS, Roberts EA, Delgado MA, Dinkins C, Zhao Z, Virgin HWT, Kyei GB, Johansen T, Vergne I, Deretic V (2010) Delivery of cytosolic components by autophagic adaptor protein p62 endows autophagosomes with unique antimicrobial properties. Immunity 32, 329341.
  • PourcelL, Irani NG, Lu YH, Riedl K, Schwartz S, Grotewold E (2010) The formation of anthocyanic vacuolar inclusions in Arabidopsis thaliana and implications for the sequestration of anthocyanin pigments. Mol. Plant 3, 7890.
  • Poustka F, Irani NG, Feller A, LuY, Pourcel L, Frame K, GrotewoldE (2007) A trafficking pathway for anthocyanins overlaps with the endoplasmic reticulum-to-vacuole protein-sorting route in Arabidopsis and contributes to the formation of vacuolar inclusions. Plant Physiol. 145, 13231335.
  • Reggiori F, Komatsu M, Finley KD, SimonsenA (2012) Autophagy: More than a nonselective pathway. Int. J. Cell Biol. 2012, doi: 10.1155/2012/219625.
  • Reumann S, Voitsekhovskaja O, Lillo C (2010) From signal transduction to autophagy of plant cell organelles: Lessons from yeast and mammals and plant-specific features. Protoplasma 247, 233256.
  • RileyBE, Kaiser SE, Shaler TA, Ng ACY, Hara T, Hipp MS, Lage K, Xavier RJ, RyuKY, Taguchi K, Yamamoto M, Tanaka K, Mizushima N, Komatsu M, Kopito RR (2010) Ubiquitin accumulation in autophagy-deficient mice is dependent on the Nrf2-mediated stress response pathway: A potential role for protein aggregation in autophagic substrate selection. J. Cell Biol. 191, 537552.
  • RobagliaC, Thomas M, Meyera C (2012) Sensing nutrient and energy status by SnRK1 and TOR kinases. Curr. Opin. Plant Biol. 15, 301307.
  • Sabatini DM, Erdjumentbromage H, Lui M, Tempst P, Snyder SH (1994) Raft1-a mammalian protein that binds to Fkbp12 in a rapamycin-dependent fashion and is homologous to yeast Tors. Cell 78, 3543.
  • Scott RC, Juhasz G, NeufeldTP (2007) Direct induction of autophagy by Atg1 inhibits cell growth and induces apoptotic cell death. Curr. Biol. 17, 111.
  • ShellyS, Lukinova N, Bambina S, Berman A, Cherry S (2009) Autophagy is an essential component of Drosophila immunity against vesicular stomatitis virus. Immunity 30, 588598.
  • SuttangkakulA, Li FQ, Chung T, Vierstra RD (2011) The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis. Plant Cell 23, 37613779.
  • SuzukiK (2012) Selective autophagy in budding yeast. Cell Death Differ . doi: 10.1038/cdd.2012.73.
  • SvenningS, Lamark T, Krause K, JohansenT (2011) Plant NBR1 is a selective autophagy substrate and a functional hybrid of the mammalian autophagic adapters NBR1 and p62/SQSTM1. Autophagy 7, 9931010.
  • TakatsukaC, Inoue Y, HiguchiT, Hillmer S, Robinson DG, MoriyasuY (2011) Autophagy in tobacco BY-2 cells cultured under sucrose starvation conditions: Isolation of the autolysosome and its characterization. Plant Cell Physiol. 52, 20742087.
  • Taylor CB, Bariola PA, delCardayré SB, Raines RT, Green PJ (1993) RNS2: A senescence-associated RNase of Arabidopsis that diverged from the S-RNases before speciation. Proc. Natl. Acad. Sci. USA 90, 51185122.
  • Thompson AR, Doelling JH, Suttangkakul A, VierstraRD (2005) Autophagic nutrient recycling in Arabidopsis directed by the ATG8 and ATG12 conjugation pathways. Plant Physiol. 138, 20972110.
  • ThompsonAR, Vierstra RD (2005) Autophagic recycling: Lessons from yeast help define the process in plants. Curr. Opin. Plant Biol. 8, 165173.
  • ThompsonDM, Lu C, Green PJ, Parker R (2008) tRNA cleavage is a conserved response to oxidative stress in eukaryotes. RNA 14, 20952103.
  • ThompsonDM, ParkerR (2009) The RNase Rny1p cleaves tRNAs and promotes cell death during oxidative stress in Saccharomyces cerevisiae. J. Cell Biol. 185, 4350.
  • ToyookaK, Moriyasu Y, Goto Y, Takeuchi M, Fukuda H, Matsuoka K (2006) Protein aggregates are transported to vacuoles by a macroautophagic mechanism in nutrient-starved plant cells. Autophagy 2, 96106.
  • TsukadaM, Ohsumi Y (1993) Isolation and characterization of autophagy-defective mutants of saccharomyces-cerevisiae. FEBS Lett. 333, 169174.
  • VanheeC, Zapotoczny G, Masquelier D, Ghislain M, BatokoH (2011) The Arabidopsis multistress regulator TSPO is a heme binding membrane protein and a potential scavenger of porphyrins via an autophagy-dependent degradation mechanism. Plant Cell 23, 785805.
  • VerweijW, Spelt C, Di Sansebastiano GP, Vermeer J, Reale L, Ferranti F, Koes R, QuattrocchioF (2008) An H+ P-ATPase on the tonoplast determines vacuolar pH and flower colour. Nat. Cell Biol. 10, 14561462.
  • WadaS, Ishida H, IzumiM, Yoshimoto K, Ohsumi Y, Mae T, Makino A (2009) Autophagy plays a role in chloroplast degradation during senescence in individually darkened leaves. Plant Physiol. 149, 885893.
  • WangY, Nishimura MT, Zhao T, Tang D (2011) ATG2, an autophagy-related protein, negatively affects powdery mildew resistance and mildew-induced cell death in Arabidopsis. Plant J. 68, 7487.
  • WarnerJR (1999) The economics of ribosome biosynthesis in yeast. Trends Biochem. Sci. 24, 437440.
  • WatersS, Marchbank K, Solomon E, Whitehouse C, GautelM (2009) Interactions with LC3 and polyubiquitin chains link nbr1 to autophagic protein turnover. FEBS Lett. 583, 18461852.
  • Wilkinson S, DaviesWJ (2002) ABA-based chemical signalling: The co-ordination of responses to stress in plants. Plant Cell Environ. 25, 195210.
  • XiongY, Contento AL, Nguyen PQ, BasshamDC (2007) Degradation of oxidized proteins by autophagy during oxidative stress in Arabidopsis. Plant Physiol. 143, 291299.
  • YangZ, KlionskyDJ (2009) An overview of the molecular mechanism of autophagy. Curr. Top. Microbiol. Immunol. 335, 132.
  • Ylä-AnttilaP, Vihinen H, Jokitalo E, Eskelinen EL (2009) Chapter 10 monitoring autophagy by electron microscopy in mammalian cells. Method. Enzymol. 452, 143164.
  • YoshimotoK, Hanaoka H, Sato S, Kato T, Tabata S, Noda T, OhsumiY (2004) Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. Plant Cell 16, 29672983.
  • Zientara-Rytter K, Lukomska J, Moniuszko G, Gwozdecki R, Surowiecki P, Lewandowska M, Liszewska F, Wawrzynska A, Sirko A (2011) Identification and functional analysis of Joka2, a tobacco member of the family of selective autophagy cargo receptors. Autophagy 7, 11451158.