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  • ChemDraw. Cambridge , MA : CambridgeSoft.
  • CHARMM 2003. documentation index. Available from: http://www.charmm.org. Accessed Dec 5, 2006.
  • ACD/ChemSketch. 2005. Toronto : Advanced Chemistry Development Inc.
  • Betting H, Haeckel M, Hinz HJ, Stockhausen M. 2001. Spectroscopic evidence for the preferential hydration of RNase A in glycerol-water mixtures: dielectric relaxation studies. Phys Chem Chem Phys 3:168892.
  • Brandts JF, Hunt L. 1967. The thermodynamics of protein denaturation. III. The denaturation of ribonuclease in water and in aqueous urea and aqueous ethanol mixtures. J Am Chem Soc 89:482638.
  • Brooks BR, Bruccolcri RE, Olafson BD, States DJ, Swaminathan S, Karplus M. 1983. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J Comp Chem 4:187217.
  • Bulman AL, Nelson HCM. 2005. Role of trehalose and heat in the structure of the C-terminal activation domain of the heat shock transcription factor. Proteins 58:82635.
  • Chen THH, Uemura M, Fujikawa S, editors. 2006. Cold hardiness in plants: molecular genetics, cell biology and physiology. Cambridge , MA : CABI Publishing.
  • Costanzo JP, Lee RE Jr, Lortz PH. 1993. Glucose concentration regulates freeze tolerance in the wood frog Rana sylvatica. J Exp Biol 181:24555.
  • Cramer CJ. 2004. Essentials of computational chemistry: theories and models. West Sussex , U.K. : John Wiley & Sons, Ltd.
  • Crowe JH, Crowe LM. 1992. Preservation of liposomes by freeze-drying. In: GregoriadiaG, editor . Liposome technology. Boca Raton , Fla. : CRC Press. p 22952.
  • Crowe JH, Crowe LM, Carpenter JF, Aurell Wistrom C. 1987. Stabilization of dry phospholipid bilayers and proteins by sugars. Biochem J 242:110.
  • Dashnau JL, Sharp KA, Vanderkooi JM. 2005a. Carbohydrate intramolecular hydrogen bonding cooperativity and its effect on water structure. J Phys Chem B 109:241529.
  • Dashnau JL, Zelent B, Vanderkooi JM. 2005b. Tryptophan interactions with glycerol/water and trehalose/sucrose cryosolvents: infrared and fluorescence spectroscopy and ab initio calculations. Biophys Chem 114:7183.
  • Dashnau JL, Nucci NV, Sharp KA, Vanderkooi JM. 2006. Hydrogen bonding and the cryoprotective properties of glycerol/water mixtures. J Phys Chem B 110:136707.
  • DeLano WL. 2002. The PyMOL molecular graphics system. San Carlos , Calif. : DeLano Scientific.
  • Elbein AD. 1974. The metabolism of alpha, alpha-trehalose. Adv Carb Chem Biochem 30:22756.
  • Foresman JB, Frisch A. 1996. Exploring chemistry with electronic structure methods. Pittsburgh , Pa. : Gaussian, Inc.
  • Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Montgomery Jr. JA, Vreven T, Kudin KN, Burant JC, Millam JM, Iyengar SS, Tomasi J, Barone V, Mennucci B, Cossi M, Scalmani G, Rega N, Petersson GA, Nakatsuji H, Hada M, Ehara M, Toyota K, Fukada R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Klene M, Li X, Knox JE, Hratchian HP, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Ayala PY, Morokuma K, Voth GA, Salvador P, Dannenberg JJ, Zakrzewski VG, Dapprich S, Daniels AD, Strain MC, Farkas O, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Ortiz JV, Cui Q, Baboul AG, Clifford S, Cioslowski J, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Martin RL, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Challacombe M, Gill PMW, Johnson B, Chen W, Wong MW, Gonzalez C, Pople JA. 2004. Gaussian 03. Wallingford , Conn. : Gaussian, Inc.
  • Galinski EA, Stein M, Amendt B, Kinder M. 1997. The kosmotropic (structure-forming) effect of compensatory solutes. Comp Biochem Physiol 117A:35765.
  • Gallagher KR, Sharp KA. 2003a. Analysis of thermal hysteresis protein hydration using the random network model. Biophys Chem 105:195209.
  • Gallagher KR, Sharp KA. 2003b. A new angle on heat capacity changes in hydrophobic solvation. J Am Chem Soc 125:985360.
  • Gekko K, Timasheff SN. 1981. Mechanism of protein stabilization by glycerol: preferential hydration in glycerol-water mixtures. Biochemistry 20:466776.
  • Gerlsma SY. 1968. Reversible denaturation of ribonuclease in aqueous solutions as influenced by polyhydric alcohols and some other additives. J Biol Chem 243:95761.
  • Izumi Y, Sonoda S, Yoshida H, Danks HV, Tsumuki H. 2006. Role of membrane transport of water and glycerol in the freeze tolerance of the rice stem borer, Chilo suppressalis Walker (Lepidoptera: Pyralidae). J Insect Physiol 52:21520.
  • Joanisse DR, Storey KB. 1994. Enzyme activity profiles in an overwintering population of freeze-tolerant larvae of the gall fly Eurosta solidaginis. J Comp Physiol B 164:24755.
  • Koster K, Webb MS, Bryant G, Lynch DV. 1994. Interactions between soluble sugars and POPC during dehydration: vitrification of sugars alters the phase behavior of the phospholipid. Biochim Biophys Acta 1193:14350.
  • Kukal O, Serianni AS, Duman JG. 1988. Glycerol metabolism in a freeze-tolerant arctic insect: an in vivo 13C NMR study. J Comp Physiol B 158:17583.
  • Leibowitz J. 1944. Isolation of trehalose from desert manna. Biochem J 38:2056.
  • Lopez de La Paz M, Ellis G, Perez M, Perkins J, Jiminez-Barbero J, Vicent C. 2002. Carbohydrate H-bonding cooperativity—intramolecular hydrogen bonds and their cooperative effect on intermolecular processes—binding to a hydrogen-bond acceptor molecule. Eur J Org Chem 2002:84055.
  • Madan B, Sharp KA. 1996. Heat capacity changes accompanying hydrophobic and ionic solvation: a Monte Carlo and random network model study. J Phys Chem 100:771321.
  • Madan B, Sharp KA. 1999. Changes in water structure induced by a hydrophobic solute probed by simulation of the water hydrogen bond angle and radial distribution functions. Biophys Chem 78:3341.
  • Mazur P. 1984. Freezing of living cells: mechanisms and implications. Cell Physiol 16:C12542.
  • Nwaka S, Holzer H. 1998. Molecular biology of trehalose and the trehalases in the yeast Saccharomyces cerivisiae. Prog Nucleic Acid Res Mol Biol 58:197237.
  • Oleinikova A, Brovchenko I, Smolin N, Krukau A, Geiger A, Winter R. 2005. Percolation transition of hydration water: from planar hydrophilic surfaces to proteins. Phys Rev Lett 95:247802.
  • Rubinsky B, Wong STS, Hong JS, Gilbert J, Roos M, Storey KB. 1994. 1H magnetic resonance imaging of freezing and thawing in freeze-tolerant frogs. Am J Physiol 266:R17717.
  • Salvucci ME, Hendrix DL, Wolfe GR. 1998. A thermoprotective role for sorbitol in the silverleaf whitefly, Bemisia aregentifolii. J Insect Physiol 44:597603.
  • Sharp KA. 1995. Polyelectrolyte electrostatics: salt dependence, entropic, and enthalpic contributions to free energy in the nonlinear Poisson–Boltzmann model. Biopolymers 36:22743.
  • Sharp KA, Madan B. 1997. Hydrophobic effect, water structure, and heat capacity changes. J Phys Chem B 101:43438.
  • Shimizu S, Smith DJ. 2004. Preferential hydration and the exclusion of cosolvents from protein surfaces. J Chem Phys 121:114854.
  • Sitkoff D, Sharp KA, Honig BA. 1994. Accurate calculation of hydration free energies using macroscopic solvent models. J Phys Chem 98:197888.
  • Storey KB. 1997. Organic solutes in freezing tolerance. Comp Biochem Physiol 117A:31926.
  • Wright WW, Guffanti GT, Vanderkooi JM. 2003. Protein in sugar films and in glycerol/water as examined by infrared spectroscopy and by the fluorescence and phosphorescence of tryptophan. Biophys J 85:198095.
  • Wyatt GR, Meyer WL. 1959. The chemistry of insect hemolymph. III. Glycerol. J Gen Physiol 42:100511.
  • Zelent B, Nucci NV, Vanderkooi JM. 2004. Liquid and ice water and glycerol/water glasses compared by infrared spectroscopy from 295 to 12 K. J Phys Chem A 108:1114150.