SEARCH

SEARCH BY CITATION

References

  • Akhtar, M.K., and Jones, P.R. (2008a) Deletion of iscR stimulates recombinant clostridial Fe–Fe hydrogenase activity and H2-accumulation in Escherichia coli BL21(DE3). Appl Microbiol Biotechnol 78: 853862.
  • Akhtar, M.K., and Jones, P.R. (2008b) Engineering of a synthetic hydF-hydE-hydG-hydA operon for biohydrogen production. Anal Biochem 373: 170172.
  • Alberty, R.A. (2001) Standard apparent reduction potentials for biochemical half reactions as a function of pH and ionic strength. Arch Biochem Biophys 389: 94109.
  • Alexeeva, S., Hellingwerf, K.J., and Teixeira de Mattos, M.J. (2003) Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions. J Bacteriol 185: 204209.
  • Andersen, K.B., and Von Meyenburg, K. (1977) Charges of nicotinamide adenine nucleotides and adenylate energy charge as regulatory parameters of the metabolism in Escherichia coli. J Biol Chem 252: 41514156.
  • Angenent, L.T., Karim, K., Al-Dahhan, M.H., Wrenn, B.A., and Domiguez-Espinosa, R. (2004) Production of bioenergy and biochemicals from industrial and agricultural wastewater. Trends Biotechnol 22: 477485.
  • Bautista, J., Satrustegui, J., and Machado, A. (1979) Evidence suggesting that the NADPH/NADP ratio modulates the splitting of the isocitrate flux between the glyoxylic and tricarboxylic acid cycles in Escherichia coli. FEBS Lett 105: 333336.
  • Blaschkowski, H.P., Neuer, G., Ludwig-Festl, M., and Knappe, J. (1982) Routes of flavodoxin and ferredoxin reduction in Escherichia coli. CoA-acylating pyruvate: flavodoxin and NADPH:flavodoxin oxidoreductases participating in the activation of pyruvate formate-lyase. Eur J Biochem 123: 563569.
  • Brumaghim, J.L., Li, Y., Henle, E., and Linn, S. (2003) Effects of hydrogen peroxide upon nicotinamide nucleotide metabolism in Escherichia coli. J Biol Chem 278: 4249542504.
  • Carrillo, N., and Ceccarelli, E.A. (2003) Open questions in ferredoxin-NADP+ reductase catalytic mechanism. Eur J Biochem 270: 19001915.
  • Cho, A. (2004) Fire and ICE: revving up for H2. Science 305: 964965.
  • Datsenko, K.A., and Wanner, B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA 97: 66406645.
  • Fischer, E., and Sauer, U. (2003) Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur J Biochem 270: 880891.
  • Fitzgerald, M.P., Rogers, L.J., Rao, K.K., and Hall, D.O. (1980) Efficiency of ferredoxins and flavodoxins as mediators in systems for hydrogen evolution. Biochem J 192: 665672.
  • Gorwa, M.-F., Croux, C., and Soucaille, P. (1996) Molecular characterization and transcriptional analysis of the putative hydrogenase gene of Clostridium acetobutylicum ATCC 824. J Bacteriol 178: 26682675.
  • Gottschalk, G. (1986) Bacterial Metabolism, 2nd edition. New York, NY, USA: Springer-Verlag.
  • Graves, M.C., Mullenbach, G.T., and Rabinowitz, J.C. (1985) Cloning and nucleotide sequence determination of the Clostridium pasteurianum ferredoxin gene. Proc Natl Acad Sci USA 82: 16531657.
  • Van Groenestijn, J.W., Hazewinkel, J.H.O., Nienoord, M., and Bussmann, P.J.T. (2002) Energy aspects of biological hydrogen production in high rate bioreactors operated in the thermophilic temperature range. Int J Hydrogen Energy 27: 11411147.
  • Henry, C.S., Broadbelt, L.J., and Hatzimanikatis, V. (2007) Thermodynamics-based metabolic flux analysis. Biophys J 92: 17921805.
  • Jungermann, K., Rupprecht, E., Ohrloff, C., Thauer, R., and Decker, K. (1971) Regulation of the reduced nicotinamide adenine dinucleotide-ferredoxin reductase system in Clostridium kluyveri. J Biol Chem 246: 960963.
  • Jungermann, K., Thauer, R.K., Leimenstoll, G., and Decker, K. (1973) Function of reduced pyridine nucleotide-ferredoxin oxidoreductases in saccharolytic Clostridia. Biochim Biophys Acta 305: 268280.
  • Kimball, E., and Rabinowitz, J.D. (2006) Identifying decomposition products in extracts of cellular metabolites. Anal Biochem 358: 273280.
  • King, P.W., Posewitz, M.C., Ghirardi, M.L., and Seibert, M. (2006) Functional studies of [FeFe] hydrogenase maturation in an Escherichia coli biosynthetic system. J Bacteriol 188: 21632172.
  • Kumar, N., Ghosh, A., and Das, D. (2001) Redirection of biochemical pathways for the enhancement of H2 production by Enterobacter cloacae. Biotechnol Lett 23: 537541.
  • Lamed, R.J., Lobos, J.H., and Su, T.M. (1988) Effects of stirring and hydrogen on fermentation products of Clostridium thermocellum. Appl Environ Microbiol 54: 12161221.
  • Lee, Y., Kim, M.K., Park, Y.H., and Lee, S.Y. (1996) Regulatory effects of cellular nicotinamide nucleotides and enzyme activities on poly(3-hydroxybutyrate) synthesis in recombinant Escherichia coli. Biotechnol Bioeng 52: 707712.
  • Lovley, D.R. (1985) Minimum threshold for hydrogen metabolism in methanogenic bacteria. Appl Environ Microbiol 49: 15301531.
  • Maeda, T., Sanchez-Torres, V., and Wood, T.K. (2008) Metabolic engineering to enhance bacterial hydrogen production. Microb Biotechnol 1: 3039.
  • Malki, S., Saimmaime, I., Luca, G., Rousset, M., Dermoun, Z., and Belaich, J.-P. (1995) Characterization of an operon encoding an NADP-reducing hydrogenase in Desulfovibrio fructosovorans. J Bacteriol 177: 26282636.
  • Meyer, J., Bruschi, M.H., Bonicel, J.J., and Bovier-Lapierre, G.E. (1986) Amino acid sequence of [2Fe–2S] ferredoxin from Clostridium pasteurianum. Biochemistry 25: 60546061.
  • Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
  • Nakashimada, Y., Rachman, M.A., Kakizono, T., and Nishio, N. (2002) Hydrogen production of Enterobacter aerogenes altered by extracellular and intracellular redox states. Int J Hydrogen Energy 27: 13991405.
  • Van Niel, E.W., Claassen, P.A., and Stams, A.J. (2003) Substrate and product inhibition of hydrogen production by the extreme thermophile, Caldicellulosiruptor saccharolyticus. Biotechnol Bioeng 81: 255262.
  • Patterson, G.H., Knobel, S.M., Arkhammar, P., Thastrup, O., and Piston, D.W. (2000) Separation of the glucose-stimulated cytoplasmic and mitochondrial NAD(P)H responses in pancreatic islet beta cells. Proc Natl Acad Sci USA 97: 52035207.
  • Pauss, A., Andre, G., Perrier, M., and Guiot, S.R. (1990) Liquid-to-gas mass transfer in anaerobic processes: inevitable transfer limitations of methane and hydrogen in the biomethanation process. Appl Environ Microbiol 56: 16361644.
  • Pollak, N., Dolle, C., and Ziegler, M. (2007) The power to reduce: pyridine nucleotides – small molecules with a multitude of functions. Biochem J 402: 205218.
  • Posewitz, M.C., King, P.W., Smolinski, S.L., Zhang, L., Seibert, M., and Ghirardi, M.L. (2004) Discovery of two novel radical S-adenosylmethionine proteins required for the assembly of an active [Fe] hydrogenase. J Biol Chem 279: 2571125720.
  • Rabinowitz, J.D., and Kimball, E. (2007) Acidic acetonitrile for cellular metabolome extraction from Escherichia coli. Anal Chem 79: 61676173.
  • Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
  • Sauer, U., Canonaco, F., Heri, S., Perrenoud, A., and Fischer, E. (2004) The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. J Biol Chem 279: 66136619.
  • Sawers, R.G. (2005) Formate and its role in hydrogen production in Escherichia coli. Biochem Soc Trans 33: 4246.
  • Seo, D., and Sakurai, H. (2002) Purification and characterization of ferredoxin-NAD(P)+ reductase from the green sulfur bacterium Chlorobium tepidum. Biochim Biophys Acta 1597: 123132.
  • Seo, D., Kamino, K., Inoue, K., and Sakurai, H. (2004) Purification and characterization of ferredoxin-NADP+ reductase encoded by Bacillus subtilis yumC. Arch Microbiol 182: 8089.
  • Serres, M.H., Gopal, S., Nahum, L.A., Liang, P., Gaasterland, T., and Riley, M. (2001) A functional update of the Escherichia coli K-12 genome. Genome Biol 2: RESEARCH0035.
  • Silva, P.J., Ban, E.C., Wassink, H., Haaker, H., De Castro, B., Robb, F.T., and Hagen, W.R. (2000) Enzymes of hydrogen metabolism in Pyrococcus furiosus. Eur J Biochem 267: 65416551.
  • Soboh, B., Linder, D., and Hedderich, R. (2004) A multisubunit membrane-bound [NiFe] hydrogenase and an NADH-dependent Fe-only hydrogenase in the fermenting bacterium Thermoanaerobacter tengcongensis. Microbiology 150: 24512463.
  • Steuber, J., Krebs, W., Bott, M., and Dimroth, P. (1999) A membrane-bound NAD(P)+-reducing hydrogenase provides reduced pyridine nucleotides during citrate fermentation by Klebsiella pneumoniae. J Bacteriol 181: 241245.
  • Thauer, R.K., Rupprecht, E., Ohrloff, C., Jungermann, K., and Decker, K. (1971) Regulation of the reduced nicotinamide adenine dinucleotide phosphate-ferredoxin reductase system in Clostridium kluyveri. J Biol Chem 246: 954959.
  • Varma, A., Boesch, B.W., and Palsson, B.O. (1993) Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates. Appl Environ Microbiol 59: 24652473.
  • Verhagen, M.F., O'Rourke, T., and Adams, M.W. (1999) The hyperthermophilic bacterium, Thermotoga maritima, contains an unusually complex iron-hydrogenase: amino acid sequence analyses versus biochemical characterization. Biochim Biophys Acta 1412: 212229.
  • Vignais, P.M., and Colbeau, A. (2004) Molecular biology of microbial hydrogenases. Curr Issues Mol Biol 6: 159188.
  • De Vrije, T., Mars, A.E., Budde, M.A., Lai, M.H., Dijkema, C., De Waard, P., and Claassen, P.A. (2007) Glycolytic pathway and hydrogen yield studies of the extreme thermophile Caldicellulosiruptor saccharolyticus. Appl Microbiol Biotechnol 74: 13581367.
  • Walton, A.Z., and Stewart, J.D. (2004) Understanding and improving NADPH-dependent reactions by nongrowing Escherichia coli cells. Biotechnol Prog 20: 403411.
  • Woodward, J., Orr, M., Cordray, K., and Greenbaum, E. (2000) Enzymatic production of biohydrogen. Nature 405: 10141015.
  • Wu, J.T., Wu, L.H., and Knight, J.A. (1986) Stability of NADPH: effect of various factors on the kinetics of degradation. Clin Chem 32: 314319.
  • Yoshida, A., Nishimura, T., Kawaguchi, H., Inui, M., and Yukawa, H. (2005) Enhanced hydrogen production from formic acid by formate hydrogen lyase-overexpressing Escherichia coli strains. Appl Environ Microbiol 71: 67626768.
  • Yoshida, A., Nishimura, T., Kawaguchi, H., Inui, M., and Yukawa, H. (2006) Enhanced hydrogen production from glucose using ldh- and frd-inactivated Escherichia coli strains. Appl Microbiol Biotechnol 73: 6772.