SEARCH

SEARCH BY CITATION

References

  • Alvarez-Martín, P., O'Connell-Motherway, M., van Sinderen, D., and Mayo, B. (2007) Functional analysis of the pBC1 replicon from Bifidobacterium catenulatum L48. Appl Microbiol Biotechnol 76: 13951402.
  • Braithwaite, K.L., Barna, T., Spurway, T.D., Charnock, S.J., Black, G.W., Hughes, N., et al. (1997) Evidence that galactanase A from Pseudomonas fluorescens subspecies cellulosa is a retaining family 53 glycosyl hydrolase in which E161 and E270 are the catalytic residues. Biochemistry 36: 1548915500.
  • van den Broek, L.A., Hinz, S.W., Beldman, G., Vincken, J.P., and Voragen, A.G. (2008) Bifidobacterium carbohydrases-their role in breakdown and synthesis of (potential) prebiotics. Mol Nutr Food Res 52: 146163.
  • Cantarel, B.L., Coutinho, P.M., Rancurel, C., Bernard, T., Lombard, V., and Henrissat, B. (2009) The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 37: 233238.
  • Copeland, A., Lucas, S., Lapidus, A., Barry, K., Glavina del Rio, T., Dalin, E., et al. (2010) Sequencing of the draft genome and assembly of Bacillus coagulans 36D1. NCBI database.
  • Cronin, M., Knobel, M., O'Connell-Motherway, M., Fitzgerald, G.F., and van Sinderen, D. (2007) Molecular dissection of a bifidobacterial replicon. Appl Environ Microbiol 73: 78587866.
  • De Vries, R.P., and Visser, J. (2001) Aspergillus enzymes involved in degradation of cell wall polysaccharides. Microbiol Mol Biol Rev 65: 497522.
  • De Vries, R.P., Parenicová, L., Hinz, S.W., Kester, H.C., Beldman, G., Benen, J.A., and Visser, J. (2002) The beta-1,4-endogalactanase A gene from Aspergillus niger is specifically induced on arabinose and galacturonic acid and plays an important role in the degradation of pectic hairy regions. Eur J Biochem 269: 49854993.
  • Degnan, B.A., and Macfarlane, G.T. (1995) Arabinogalactan utilization in continuous cultures of Bifidobacterium longum: effect of co-culture with Bacteroides thetaiotaomicron. Anaerobe 1: 103112.
  • Delangle, A., Prouvost, A.F., Cogez, V., Bohin, J.P., Lacroix, J.M., and Cotte-Pattat, N.H. (2007) Characterization of the Erwinia chrysanthemi Gan locus, involved in galactan catabolism. J Bacteriol 189: 70537061.
  • Hinz, S.W., Pastink, M.I., van den Broek, L.A., Vincken, J.P., and Voragen, A.G. (2005) Bifidobacterium longum endogalactanase liberates galactotriose from type I galactans. Appl Environ Microbiol 71: 55015510.
  • Klaassens, E.S., Boesten, R.J., Haarman, M., Knol, J., Schuren, F.H., Vaughan, E.E., and de Vos, W.M. (2009) Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants. Appl Environ Microbiol 75: 26682676.
  • Law, J., Buist, G., Haandrikman, A., Kok, J., Venema, G., and Leenhouts, K. (1995) A system to generate chromosomal mutations in Lactococcus lactis which allows fast analysis of targeted genes. J Bacteriol 177: 70117018.
  • Lekhnovitch, V.S. (1961) Introduction of the potato into western and central Europe. Nature 191: 518519.
  • Long, A.D., Mangalam, H.J., Chan, B.Y., Tolleri, L., Hatfield, G.W., and Baldi, P. (2001) Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J Biol Chem 276 : 1993719944.
  • Macfarlane, G.T., Steed, H., and Macfarlane, S. (2008) Bacterial metabolism and health-related effects of galacto-oligosaccharides and other prebiotics. J Appl Microbiol 104: 305344.
  • McGrath, S., Fitzgerald, G.F., and van Sinderen, D. (2001) Improvement and Optimization of Two Engineered Phage Resistance Mechanisms in Lactococcus lactis. Appl Environ Microbiol 67: 608616.
  • Marchesi, J., and Shanahan, F. (2007) The normal intestinal microbiota. Curr Opin Infect Dis 20: 508513.
  • Mazé, A., O'Connell-Motherway, M., Fitzgerald, G.F., Deutscher, J., and van Sinderen, D. (2007) Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003. Appl Environ Microbiol 73: 545553.
  • Mierau, I., and Kleerebezem, M. (2005) 10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis. Appl Microbiol Biotechnol 68: 705717.
  • Nakano, H., Takenishi, S., Kitahata, S., Kinugasa, H., and Watanabe, Y. (1990) Purification and characterization of an exo-1,4-beta-galactanase from a strain of Bacillus subtilis. Eur J Biochem 193: 6167.
  • O'Connell Motherway, M., Fitzgerald, G.F., Neirynck, S., Ryan, S., Steidler, L., and van Sinderen, D. (2008) Characterisation of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003. Appl Environ Microbiol 74: 62716279.
  • O'Connell Motherway, M., O'Driscoll, J., Fitzgerald, G.F., and van Sinderen, D. (2009) Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003. Microb Biotechnol 2: 321332.
  • Parche, S., Beleut, M., Rezzonico, E., Jacobs, D., Arigoni, F., Titgemeyer, F., and Jankovic, I. (2006) Lactose-over-glucose preference in Bifidobacterium longum NCC2705: glcP, encoding a glucose transporter, is subject to lactose repression. J Bacteriol 188: 12601265.
  • Parche, S., Amon, J., Jankovic, I., Rezzonico, E., Beleut, M., Barutçu, H., et al. (2007) Sugar Transport Systems of Bifidobacterium longum NCC2705. J Mol Microbiol Biotechnol 12: 919.
  • Pokusaeva, K., O'Connell-Motherway, M., Zomer, A., Fitzgerald, G.F., and van Sinderen, D. (2009) Characterization of two novel alpha-glucosidases from Bifidobacterium breve UCC2003. Appl Environ Microbiol 75: 11351143.
  • Pokusaeva, K., Neves, A.R., Zomer, A., O'Connell-Motherway, M., MacSharry, J., Curley, P., et al. (2010) Ribose utilization by the human commensal Bifidobacterium breve UCC2003. Microb Biotechnol 3: 311323.
  • Quentin, Y., Fichant, G., and Denizot, F. (1999) Inventory, assembly and analysis of Bacillus subtilis ABC transport systems. J Mol Biol 287: 467484.
  • Rastall, R.A., Gibson, G.R., Gill, H.S., Guarner, F., Klaenhammer, T.R., Pot, B., et al. (2005) Modulation of the microbial ecology of the human colon by probiotics, prebiotics and synbiotics to enhance human health: an overview of enabling science and potential applications. FEMS Microbiol Ecol 52: 145152.
  • de Ruyter, P.G., Kuipers, O.P., and de Vos, W.M. (1996) Controlled gene expression systems for Lactococcus lactis with the food-grade inducer nisin. Appl Environ Microbiol 62: 36623667.
  • Ryan, S.M., Fitzgerald, G.F., and van Sinderen, D. (2005) Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003. Appl Environ Microbiol 71: 34753482.
  • Ryan, S.M., Fitzgerald, G.F., and van Sinderen, D. (2006) Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains. Appl Environ Microbiol 72: 52895296.
  • Sakata, S., Tonooka, T., Iishizeki, S., Takada, M., Sakamoto, M., Fukuyama, M., and Benno, Y. (2005) Culture independent analysis of fecal microbiota in infants, with special reference to Bifidobacterium species. FEMS Microbiol Lett 243: 417423.
  • Schell, M.A., Karmirantzou, M., Snel, B., Vilanova, D., Berger, B., Pessi, G., et al. (2002) The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci USA 99: 1442214427.
  • Stanton, C., Ross, R.P., Fitzgerald, G.F., and van Sinderen, D. (2005) Fermented functional foods based on probiotics and their biogenic metabolites. Curr Opin Biotechnol 16 : 198203.
  • Steed, H., Macfarlane, G.T., and Macfarlane, S. (2008) Prebiotics, synbiotics and inflammatory bowel disease. Mol Nutr Food Res 52 : 898905.
  • Swint-Kruse, L., and Matthews, K.S. (2009) Allostery in the LacI/GalR family: variations on a theme. Curr Opin Microbiol 12: 129137.
  • Turroni, F., van Sinderen, D., and Ventura, M. (2009) Bifidobacteria: from ecology to genomics. Front Biosci 14: 46734684.
  • Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G.F., Chater, K.F., and van Sinderen, D. (2007a) Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev 71: 495548.
  • Ventura, M., O'Connell-Motherway, M., Leahy, S., Moreno-Munoz, J.A., Fitzgerald, G.F., and van Sinderen, D. (2007b) From bacterial genome to functionality; case bifidobacteria. Int J Food Microbiol 120: 212.
  • Ventura, M., O'Flaherty, S., Claesson, M.J., Turroni, F., Klaenhammer, T.R., van Sinderen, D., and O'Toole, P.W. (2009a) Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol 7: 6171.
  • Ventura, M., Turroni, F., Zomer, A., Foroni, E., Giubellini, V., Bottacini, F., et al. (2009b) The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genet 5: 12 e1000785.
  • Webb, A.J., Homer, K.A., and Hosie, A.H. (2008) Two closely related ABC transporters in Streptococcus mutans are involved in disaccharide and/or oligosaccharide uptake. J Bacteriol 190: 168178.
  • Wilson, C.J., Zhan, H., Swint-Kruse, L., and Matthews, K.S. (2007) The lactose repressor system: paradigms for regulation, allosteric behavior and protein folding. Cell Mol Life Sci 64: 316.
  • Xu, J., Mahowald, M.A., Ley, R.E., Lozupone, C.A., Hamady, M., Martens, E.C., et al. (2007) Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol 5: 156.
  • Yang, H., Ichinose, H., Yoshida, M., Nakajima, M., Kobayashi, H., and Kaneko, S. (2006) Characterization of a thermostable endo-beta-1,4-D-galactanase from the hyperthermophile Thermotoga maritima. Biosci Biotechnol Biochem 70: 538534.
  • Zoetendal, E.G., Vaughan, E.E., and de Vos, W.M. (2006) A microbial world within us. Mol Microbiol 59: 16391650.