Present addresses: Systems Bioinformatics IBIVU, Free University of Amsterdam, 1081HV Amsterdam, the Netherlands;
Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays
Version of Record online: 21 FEB 2011
© 2011 The Authors. Journal compilation © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd
Special Issue: Lactic Acid Bacteria. Editors: Michiel Kleerebezem and Willem M. de Vos.
Volume 4, Issue 3, pages 383–402, May 2011
How to Cite
Siezen, R. J., Bayjanov, J. R., Felis, G. E., van der Sijde, M. R., Starrenburg, M., Molenaar, D., Wels, M., van Hijum, S. A. F. T. and van Hylckama Vlieg, J. E. T. (2011), Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays. Microbial Biotechnology, 4: 383–402. doi: 10.1111/j.1751-7915.2011.00247.x
Authors' contributions: G.F., D.M., R.S. and J.H.V. conceived the study. G.F. and M.S. performed the experimental work, while J.B., D.M., M.W., and M.v.d.S. performed the bioinformatics analyses. R.S., G.F. and J.H.V. wrote the article. S.v.H. supervised the bioinformatics analyses performed by M.v.d.S. and J.B. and corrected the article. All authors have read and approved the final manuscript.
- Issue online: 25 APR 2011
- Version of Record online: 21 FEB 2011
- Received 15 October, 2010; accepted 28 December, 2010.
Table S1. List of core chromosomal OGs (chrOGs) of the L. lactis genome. The list includes the genes in these chrOGs in the four reference genomes. The three different worksheets are sorted according to (i) our OG number, (ii) LaCOG number and (iii) functional annotation of the KF147 gene products.
Table S2. List of L. lactis-specific core chrOGs and genes.
Table S3. List of subspecies-specific and niche-specific chromosomal OGs.
Table S4. Annotation of variable gene clusters and genes.
Table S5. Known L. lactis plasmids represented on the CGH microarray.
Table S6. Predicted presence/absence of important known plasmid-located genes in 39 L. lactis strains.
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