SEARCH

SEARCH BY CITATION

References

  • van Baarlen, P., Troost, F.J., van Hemert, S., van der Meer, C., de Vos, W.M., de Groot, P.J., et al. (2009) Differential NF-kappaB pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance. Proc Natl Acad Sci USA 106: 23712376.
  • van Baarlen, P., Troost, F., van der Meer, C., Hooiveld, G., Boekschoten, M., Brummer, R.J., and Kleerebezem, M. (2011) Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways. Proc Natl Acad Sci USA 108(Suppl 1): 45624569.
  • Bachmann, H., Starrenburg, M.J.C., Dijkstra, M., Molenaar, D., Kleerebezem, M., Rademaker, J.L., and van Hylckama Vlieg, J.E. (2009) Regulatory phenotyping reveals important diversity within the species Lactococcus lactis. Appl Environ Microbiol 75: 56785694.
  • Boesten, R.J., and De Vos, W.M. (2008) Interactomics in the human intestine: Lactobacilli and Bifidobacteria make a difference. J Clin Gastroenterol 42: S163S167.
  • Boesten, R., Schuren, F., Ben Amor, K., Haarman, M., Knol, J., and De Vos, W.M. (2011) Bifidobacterium population analysis in the infant gut by direct mapping of genomic hybridization patterns: potential for monitoring temporal development and effects of dietary regimens. Microb Biotechnol 4: 417427.
  • Bolotin, A., Wincker, P., Mauger, S., Jaillon, O., Malarme, K., Weissenbach, J., et al. (2001) The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res 11: 731753.
  • De Vos, W.M. (1987) Gene cloning and expression in lactic streptococci. FEMS Microbiol Rev 46: 281295.
  • De Vos, W.M. (1999) Gene expression systems in lactic acid bacteria. Curr Opin Microbiol 2: 289295.
  • De Vos, W.M. (2001) Advances in genomics for microbial food fermentations and safety. Curr Opin Biotechnol 12: 493498.
  • De Vos, W.M., Mulders, J.W.M., Siezen, R.J., Hugenholtz, J., and Kuipers, O.P. (1993) Properties of nisin Z, and distribution of its gene, nisZ, in Lactococcus lactis. Appl Environ Microbiol 59: 213218.
  • Duong, T., Miller, M.J., Barrangou, R., Azcarate-Peril, M.A., and Klaenhammer, T.R. (2011) Construction of vectors for inducible and constitutive gene expression in Lactobacillus. Microb Biotechnol 4: 357367.
  • Grangette, C., Nutten, S., Palumbo, E., Morath, S., Hermann, C., Dewulf, J., et al. (2005) Enhanced antiinflammatory capacity of a Lactobacillus plantarum mutant synthesizing modified teichoic acids. Proc Natl Acad Sci USA 102: 1032110326.
  • Kankainen, M., Paulin, L., Tynkkynen, S., von Ossowski, I., Reunanen, J., Partanen, P., et al. (2009) Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein. Proc Natl Acad Sci USA 106: 1719317198.
  • Kant, R., Blom, J., Palva, A., Siezen, R.J., and De Vos, W.M. (2011) Comparative genomics of Lacobacillus. Microb Biotechnol 4: 323332.
  • Kleerebezem, M., and Vaughan, E.E. (2009) Probiotic and gut lactobacilli and bifidobacteria: molecular approaches to study diversity and activity. Annu Rev Microbiol 63: 269290.
  • Kleerebezem, M., Quadri, L., Kuipers, O.P., and De Vos, W.M. (1997) Quorum sensing by peptide pheromones and two component signal transduction systems in Gram-positive bacteria. Mol Microbiol 24: 895954.
  • Kleerebezem, M., Boekhorst, J., van Kranenburg, R., Molenaar, D., Kuipers, O.P., Leer, R., et al. (2003) Complete genome sequence of Lactobacillus plantarum WCFS1. Proc Natl Acad Sci USA 100: 19901995.
  • Kleerebezem, M., Hols, P., Bernard, E., Rolain, T., Zhou, M., Siezen, R.J., and Bron, P.A. (2010) The extracellular biology of the lactobacilli. FEMS Microbiol Rev 34: 199230.
  • Konstantinov, S.R., Smidt, H., De Vos, W.M., Bruijns, S.C., Singh, S.K., Valence, F., et al. (2008) S layer protein A of Lactobacillus acidophilus NCFM regulates immature dendritic cell and T cell functions. Proc Natl Acad Sci USA 105: 1947419478.
  • Kuipers, O.P., Rollema, H.S., Yap, W.M.G., Boot, H.J., Siezen, R.J., and De Vos, W.M. (1992) Engineering dehydrated amino acid residues in the antimicrobial peptide nisin. J Biol Chem 267: 2434024346.
  • Kuipers, O.P., Beerthuyzen, M.M., Siezen, R.J., and De Vos, W.M. (1993) Characterization of the nisin gene cluster nisABTCIPR of Lactococcus lactis. Requirement of expression of the nisA and nisI genes for development of immunity. Eur J Biochem 216: 281291.
  • Lebeer, S., Claes, I.J., Verhoeven, T.L., Vanderleyden, J., and De Keersmaecker, S.C. (2011) Exopolysaccharides of Lactobacillus rhamnosus GG form a protective shield against innate immune factors in the intestine. Microb Biotechnol 4: 368374.
  • Machielsen, R., Siezen, R.J., van Hijum, S.A., and van Hylckama Vlieg, J.E. (2011) Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis. Appl Environ Microbiol 77: 555563.
  • Marco, M.L., de Vries, M.C., Wels, M., Molenaar, D., Mangell, P., Ahrne, S., et al. (2010) Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice. ISME J 4: 14811484.
  • Meijerink, M., van Hemert, S., Taverne, N., Wels, M., de Vos, P., Bron, P.A., et al. (2010) Identification of genetic loci in Lactobacillus plantarum that modulate the immune response of dendritic cells using comparative genome hybridization. PLoS ONE 13: e10632.
  • Molenaar, D., Bringel, F., Schuren, F.H., De Vos, W.M., Siezen, R.J., and Kleerebezem, M. (2005) Exploring Lactobacillus plantarum genome diversity by using microarrays. J Bacteriol 187: 61196127.
  • Nelson, K.E., Weinstock, G.M., Highlander, S.K., Worley, K.C., and the Human Microbiome Jumpstart Reference Strains Consortium (2010) A catalog of reference genomes from the human microbiome. Science 328: 994999.
  • O'Connell Motherway, M., Fitzgerald, G.F., and van Sinderen, D. (2011) Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003. Microb Biotechnol 4: 403416.
  • Piper, C., Hill, C., Cotter, P.D., and Ross, R.P. (2011) Bioengineering of a Nisin A-producing Lactococcus lactis to create isogenic strains producing the natural variants Nisin F, Q and Z. Microb Biotechnol 4: 375382.
  • Pretzer, G., Snel, J., Molenaar, D., Wiersma, A., Bron, P.A., Lambert, J.M., et al. (2005) Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum. J Bacteriol 187: 61286136.
  • Rauch, P.J.G., Beerthuyzen, M., and De Vos, W.M. (1994) Distribution and evolution of nisin sucrose elements in Lactococcus lactis. Appl Environ Microbiol 60: 17981804.
  • Rud, I., Naterstad, K., Bongers, R.S., Molenaar, D., Kleerebezem, M., and Axelsson, L. (2011) Functional analysis of the role of CggR (central glycolytic gene regulator) in Lactobacillus plantarum by transcriptome analysis. Microb Biotechnol 4: 345356.
  • Saxelin, M., Tynkkynen, S., Matilla-Sandholm, T., and De Vos, W.M. (2005) Probiotic and other functional microbes: from markets to mechanisms. Curr Opin Biotechnol 16: 204211.
  • Siezen, R.J., Bayjanov, J.R., Felis, G.E., van der Sijde, M.R., Starrenburg, M., Molenaar, D., et al. (2011) Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays. Microb Biotechnol 4: 383402.
  • Teusink, B., Wiersma, A., Molenaar, D., Francke, C., De Vos, W.M., et al. (2006) Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model. J Biol Chem 281: 4004140048.
  • Van Kranenburg, R., Boels, I.C., Kleerebezem, M., and De Vos, W.M. (1999) Genetics and engineering of microbial exopolysaccharides for food: approaches for the production of existing and novel polysaccharides. Curr Opin Biotechnol 10: 498504.
  • Ventura, M., O'Flaherty, S., Claesson, M.J., Turroni, F., Klaenhammer, T.R., van Sinderen, D., and O'Toole, P.W. (2009) Genome-scale analyses of health-promoting bacteria: probiogenomics. Nat Rev Microbiol 7: 6171.
  • Wels, M., Overmars, L., Francke, C., Kleerebezem, M., and Siezen, R.J. (2011) Reconstruction of the regulatory network of Lactobacillus plantarum WCFS1 on basis of correlated gene expression and conserved regulatory motifs. Microb Biotechnol 4: 333344.
  • Zoetendal, E.G., Rajilić-Stojanović, M., and De Vos, W.M. (2008) High throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut 57: 16051615.