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Literature cited

  • Achord, S., R. W. Zabel, and B. P. Sandford. 2007. Migration timing, growth, and estimated parr-to-smolt survival rates of wild Snake River spring–summer Chinook salmon from the Salmon River Basin, Idaho, to the Lower Snake River. Transactions of the American Fisheries Society 136:142154.
  • Allen, J. D. 2004. Landscapes and riverscapes: the influence of land use on stream ecosystems. Annual Review of Ecology, Evolution and Systematics 35:257284.
  • Alter, S. E., E. Rynes, and S. R. Palumbi. 2007. DNA evidence for historic population size and past ecosystem impacts of gray whales. Proceedings of the National Academy of Sciences of the United States of America 104:1516215167.
  • Anderson, J. F., E. E. Hardy, J. T. Roach, and R. E. Witmer. 1976. A land use and land cover classification for use with remote sensor data. Geological Survey Professional Paper 964. United States Government Printing office, Washington D.C., pp. 28. http://landcover.usgs.gov/pdf/anderson.pdf [accessed 20 March 2008].
  • Beacham, T. D., and C. B. Murray. 1987. Adaptive variation in body size, morphology, egg size, and developmental biology of chum salmon (Oncorhynchus keta) in British Columbia. Canadian Journal of Fisheries and Aquatic Sciences 44:244261.
  • Beacham, T. D., and C. B. Murray. 1989. Variation in developmental biology of sockeye salmon (Oncorhynchus nerka) and Chinook salmon (O. tshawytscha) in British Columbia. Canadian Journal of Zoology 67:20812089.
  • Beechie, T. J., B. D. Collins, and G. R. Pess. 2001. Holocene and recent geomorphic processes, land use and salmonid habitat in two north Puget Sound river basins. In J. B.Dorava, D. R.Montgomery, F.Fitzpatrick, and B.Palcsak, eds. Geomorphic Processes and Riverine Habitat, Water Science and Application, pp. 3754. American Geophysical Union, Washington, DC.
  • Beechie, T. J., M. H. Ruckelshaus, E. Buhle, A. Fullerton, and L. Holsinger. 2006. Hydrologic regime and the conservation of salmon life history diversity. Biological Conservation 130:560572.
  • Beer, W. N., and J. J. Anderson. 2001. Effect of spawning day and temperature on salmon emergence: interpretations of a growth model for Methow River Chinook. Canadian Journal of Fisheries and Aquatic Sciences 58:943949.
  • Benjamini, Y., and Y. Hochberg. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B 57:289300.
  • Bennett, T. R. 2006. Movement, Growth, and Survival of Juvenile Coho and Trout in the East Twin River. Washington University of Washington, Seattle, WA.
  • Benson, J. F., and M. J. Chamberlain. 2007. Space use, survival, movements, and reproduction of reintroduced Louisiana black bears. Journal of Wildlife Management 71:23932403.
  • Bjornn, T. C. 1978. Survival, Production, and Yield of Trout and Chinook Salmon in the Lemhi River, Idaho. Idaho Department of Fish and Game Bulletin 27, Idaho Cooperative Fishery Research Unit, University of Idaho, Idaho, Moscow, pp. 57.
  • Brannon, E. L.. 1987. Mechanisms stabilizing salmonid fry emergence timing. Canadian Special Publication of Fisheries and Aquatic Sciences 96:120124.
  • Brannon, E. L., T. P. Quinn, G. L. Lucchetti, and B. D. Ross. 1981. Compass orientation of sockeye salmon fry from a complex river system. Canadian Journal of Zoology 59:15481553.
  • British Columbia Ministry of Environment. 2005. British Columbia Watershed Atlas. [ESRI shapefile], 1:50,000. British Columbia Ministry of Environment, Victoria, BC, Available at: http://www.env.gov.bc.ca/fish/watershed_atlas_maps/index.html [accessed 20 March 2008] .
  • British Columbia Ministry of Environment. 2006. British Columbia Historical Fish Distribution [ESRI shapefile]. Victoria, BC. Available at: http://www.env.gov.bc.ca/fish/fiss/maps/fissfish2ftp.html [accessed 20 March 2008].
  • Brodie, E. D., A. J. Moore, and F. J. Stern. 1995. Visualizing and quantifying natural selection. Trends in Ecology and Evolution 10:313318.
  • Browne, C. L., and S. J. Hecnar. 2007. Species loss and shifting population structure of freshwater turtles despite habitat protection. Biological Conservation 138:421429.
  • CALFISH. 2006. A California Cooperative Anadromous Fish and Habitat Data Program. California Fish Passage Assessment Database Project [ESRI shapefile]. Sacramento, CA. URL: http://www.calfish.org/FishDataandMaps/DataDownloads/tabid/90/Default.aspx (accessed on January 2008).
  • California Interagency Watershed Mapping Committee and Department of Water Resources. 2004. [E00 file]. California Interagency Watershed Map of 1999 (updated 2004). Sacramento, CA. Available at: http://www.env.gov.bc.ca/fish/watershed_atlas_maps/index.html [accessed 20 March 2008].
  • California Watershed Mapping Committee and Department of Water Resources (CWMP/CDWR). 2004. The California Interagency Watershed Map of 1999 (updated 2004) [computer file]. Sacramento, CA. Available WEB: http://cain.nbii.gov/calwater (accessed on 6 December, 2006).
  • Carlson, S. M., and T. R. Seamons. 2008. A review of quantitative genetic components of fitness in salmonids: implications for adaptation to future change. Evolutionary Applications 1:222238.
  • Columbia Basin Interagency Committee. 1957. Inventory of streams and proposed improvements for development of the fishery resources of the Columbia River Basin – Part II. Columbia River Basin Fishery Program, 100 p. Available Environmental and Technical Services Division, NMFS, 911 N.E. 11th Ave., Room 620, Portland, OR 97232.
  • Crandell, P. A., and G. A. E. Gall. 1993a. The effect of sex on heritability estimates of body weight determined from data on individually tagged rainbow trout (Oncorhynchus mykiss). Aquaculture 113:4755.
  • Crandell, P. A., and G. A. E. Gall. 1993b. The genetics of age and weight at sexual maturity based on individually tagged rainbow trout (Oncorhynchus mykiss). Aquaculture 117:95105.
  • Dean, M. 2005. Collection and Analysis of Scales From Rainbow Trout of the Sacramento River near Redding, CA. Unpublished report, California Department of Fish and Game, Sacramento, CA.
  • Dickerson, B. R., M. F. Willson, P. Bentzen, and T. P. Quinn. 2005. Heritability of life history and morphological traits in a wild pink salmon population assessed by DNA parentage analysis. Transactions of the American Fisheries Society 134:13231328.
  • Ehrlich, P. R., and A. H. Ehrlich. 1981. Extinction: The Causes and Consequences of the Disappearance of Species. Random House, New York, NY.
  • Environment Canada. 1994. Canadian Monthly Climate Data and 1961-1990 Normals on CD-ROM, Version 3.0E. Environment Canada, Atmospheric Environment Service, Downsview, ON.
  • Epps, C. W., P. J. Palsboll, J. D. Wehausen, G. K. Roderick, R. R. Ramey, and D. R. McCullough. 2005. Highways block gene flow and cause a rapid decline in genetic diversity of desert bighorn sheep. Ecology Letters 8:10291038.
  • Evermann, B. W. 1896. A preliminary report upon salmon investigations in Idaho in1894. U.S. Fisheries Commission, Bulletin 15:253284.
  • Fahrig, L. 2001. How much habitat is enough? Biological Conservation 100:6574.
  • Falconer, D. S., and T. F. C. Mackay. 1996. Introduction to Quantitative Genetics. Prentice Hall, Essex, UK.
  • Feist, B. E., E. A. Steel, G. R. Pess, and R. E. Bilby. 2003. The influence of scale on salmon habitat restoration priorities. Animal Conservation 6:271282.
  • Folmar, L. C., and W. W. Dickhoff. 1980. The parr–smolt transformation (smoltification) and seawater adaptation in salmonids: a review of selected literature. Aquaculture 21:137.
  • Fulton, L. A. 1970. Spawning area and abundance of steelhead trout and coho, sockeye, and chum salmon in the Columbia River basin – past and present. Special Scientific Report – Fisheries No. 618. U.S..DOC, NOAA, NMFS. pp. 37.
  • Funk, W. C., J. A. Tyburczy, K. L. Knudsen, K. R. Lindner, and F. W. Allendorf. 2005. Genetic basis of variation in morphological and life-history traits of a wild population of pink salmon. Journal of Heredity 96:2431.
  • Furness, M. 1989. Electric power in Salmon. In T.Magoon, and M.Crosby, eds. Patchwork: Pieces of Local History, pp. 5563. Salmon ID; Salmon High School.
  • Furniss, M. J., T. D. Roelofs, and C. S. Yee. 1991. Road construction and maintenance. American Fisheries Society Special Publication 19:297323.
  • Futuyma, D. J.. 2005. Evolution. Sinauer Associates, Sunderland, MA.
  • Gall, G. A. E., and B. Bentley. 1990. Genetic isolation of steelhead rainbow trout in Kaiser and Redwood Creeks, California. California Fish and Game 76:216223.
  • Gall, G. A. E., and N. Huang. 1988. Heritability and selection schemes for rainbow trout: body weight. Aquaculture 73:4356.
  • Gall, G. A. E., and R. Neira. 2004. Genetic analysis of female reproduction traits of farmed coho salmon (Oncorhyncus kisutch). Aquaculture 234:143154.
  • Garcia de Leaniz, C., I. A. Fleming, S. Einum, E. Verspoor, W. C. Jordan, S. Consuegra, N. Aubin-Horth et al. 2007. A critical review of adaptive genetic variation in Atlantic salmon: implications for conservation. Biological Reviews 82:173211.
  • Gjerde, B. 1984. Response to individual selection for age at sexual maturity in Atlantic salmon. Aquaculture 38:229240.
  • Gjerde, B., and T. Gjedrem. 1984. Estimates of phenotypic and genetic parameters for carcass traits in Atlantic salmon and rainbow trout. Aquaculture 36:97110.
  • Gjerde, B., H. Simianer, and T. Refstie. 1994. Estimates of genetic and phenotypic parameters for body-weight, growth-rate and sexual maturity in Atlantic salmon. Livestock Production Science 38:133143.
  • Goodsell, P. J., and S. D. Connell. 2002. Can habitat loss be treated independently of habitat configuration? Implications for rare and common taxa in fragmented landscapes. Marine Ecology-Progress Series 239:3744.
  • Gregory, S. V., and P. A. Bisson. 1997. Degradation and loss of anadromous fish habitat in the Pacific Northwest. In D. J.Stouder, P. A.Bisson, and R. J.Naiman, eds. Pacific Salmon and Their Ecosystems: Status and Future Options, pp. 277314. Chapman and Hall, New York, NY.
  • Groot, C., and L. Margolis. 1991. Pacific Salmon Life Histories. University of British Columbia, Vancouver, BC.
  • Gustafson, R. G., R. S. Waples, J. M. Myers, L. A. Weitkamp, G. J. Bryant, O. W. Johnson, and J. J. Hard. 2007. Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology 21:10091020.
  • Haas, J. B. 1965. Fishery problems associated with Brownlee, Oxbow, and Hells Canyon Dams on the middle Snake River. Fish Commission Oregon, Investigational Rep. No. 4, pp. 95. Oregon Department of Fish and Wildlife, Portland, OR.
  • Hankin, D. G., J. W. Nicholas, and T. W. Downey. 1993. Evidence for inheritance of age at maturity in Chinook salmon, Oncorhynchus tshawytscha. Canadian Journal of Fisheries and Aquatic Sciences 50:347358.
  • Healey, M. C.. 1991. The life history of Chinook salmon (Oncorhynchus tshawytscha). In C. Groot, and L.Margolis, eds. Life History of Pacific Salmon, pp. 311393. University of British Columbia Press, Vancouver, BC.
  • Heath, D. D., R. H. Devlin, J. W. Heath, and G. K. Iwama. 1994. Genetic, environmental and interaction effects on the incidence of jacking in Oncorhynchus tshawytscha (chinook salmon). Heredity 72:146154.
  • Heath, D. D., L. Rankin, C. A. Bryden, J. W. Heath, and J. M. Shrimpton. 2002. Heritability and Y-chromosome influence in the jack male life history of chinook salmon (Oncorhynchus tshawytscha). Heredity 89:311317.
  • Helm, A., I. Hanski, and M. Partel. 2006. Slow response of plant species richness to habitat loss and fragmentation. Ecology Letters 9:7277.
  • Hilborn, R., T. P. Quinn, D. E. Schindler, and D. E. Rogers. 2003. Biocomplexity and fisheries sustainability. Proceedings of the National Academy of Sciences of the United States of America 100:65646568.
  • Hodgson, S., and T. P. Quinn. 2002. The timing of adult sockeye salmon migration into freshwater: adaptations by populations to prevailing thermal regimes. Canadian Journal of Zoology 80:542555.
  • Interior Columbia Technical Recovery Team. 2003. Independent Populations of Chinook, Steelhead, and Sockeye for Listed Evolutionarily Significant Units Within the Interior Columbia River Domain. Working draft report available at: http://www.nwfsc.noaa.gov/trt/col_docs/independentpopchinsteelsock.pdf.
  • Interior Columbia Technical Recovery Team. 2007. Viability Criteria for Application to Interior Columbia Basin Salmonid ESUs. Review draft available at: http://www.nwfsc.noaa.gov/trt/trt_documents/ictrt_viability_criteria_reviewdraft_2007_complete.pdf.
  • Iwamoto, R. N., B. A. Alexander, and W. K. Hershberger. 1984. Genotypic and environmental-effects on the incidence of sexual precocity in coho salmon (Oncorhynchus kisutch). Aquaculture 43:105121.
  • Jónasson, J., and T. Gjedrem. 1997. Genetic correlation for body weight of Atlantic salmon grilse between fish in sea ranching and land-based farming. Aquaculture 157:205214.
  • Jónasson, J., B. Gjerde, and T. Gjedrem. 1997. Genetic parameters for return rate and body weight of sea-ranched Atlantic salmon. Aquaculture 154:219231.
  • Kerr, J. T., and I. Deguise. 2004. Habitat loss and the limits to endangered species recovery. Ecology Letters 7:11631169.
  • Kinnison, M. T., M. J. Unwin, W. K. Hershberger, and T. P. Quinn. 1998. Egg size, fecundity, and development rate of two introduced New Zealand chinook salmon (Oncorhynchus tshawytscha) populations. Canadian Journal of Fisheries and Aquatic Sciences 55:19461953.
  • Konrad, C. 2006. Location and timing of river-aquifer exchanges in six tributaries to the Columbia River in the Pacific Northwest of the United States. Journal of Hydrology 328:444470.
  • Lande, R. 1992. Neutral theory of quantitative genetic variance in an island model with local extinction and recolonization. Evolution 46:381389.
  • Lavier, D. C. 1976. Production of Wild Fish-Contribution to Escapement. Investigative Reports of Columbia River Fisheries Project. Prepared for Pacific Northwest Regional Commission, pp. 25. Environmental and Technical Services Division, NMFS, Portland, OR.
  • Lindley, S. T., R. Schick, A. Agrawal, M. Goslin, T. Pearson, E. Mora, J. F. Anderson et al. 2006a. Historical population structure of Central Valley steelhead and its alteration by dams. San Francisco Estuary and Watershed Science 4:119.
  • Lindley, S. T., R. Schick, A. Agrawal, M. Goslin, T. E. Pearson, E. Mora, J. J. Anderson et al. 2006b. Historical population structure of Central Valley steelhead and its alteration by dams. San Francisco Estuary and Watershed Science 4:21.
  • McEwan, D. 2001. Central Valley Steelhead. In R. L.Brown, ed., Fish Bulletin 179, Contributions to the Biology of Central Valley Salmonids, pp. 145. Scripps Institutions of Oceanography Library, San Diego CA. Available at: http://repositories.cdlib.org/sio/lib/fb/179 [accessed 20 March 2008].
  • McIntosh, B. A., J. R. Sedell, J. E. Smith, R. C. Wissmar, S. E. Clarke, G. H. Reeves, and L. A. Brown. 1994. Management history of eastside ecosystems: changes in fish habitat over 50 years, 1935 to 1992. Gen. Tech. Rep. PNW-GTR-321. U.S. Department of Agriculture, Forest Service, Pacific Northwest Research Station, Portland, OR. pp. 55.
  • McIntosh, B. A., J. R. Sedell, R. F. Thurow, S. E. Clarke, and G. L. Chandler. 2000. Historical changes in pool habitats in the Columbia River Basin. Ecological Applications 10:14781496.
  • McIntyre, J. D., and J. M. Blanc. 1973. A genetic analysis of hatching time in steelhead trout (Salmo gairdneri). Journal of the Fisheries Research Board of Canada 30:137139.
  • McKay, L. R., P. E. Ihssen, and G. W. Friars. 1986. Genetic parameters of growth in rainbow trout, Salmo gairdneri, as a function of age and maturity. Aquaculture 58:241254.
  • Millennium Ecosystem Assessment (MA). 2005. Ecosystems and Human Well-being: Synthesis. Island Press, Washington, DC.
  • Miller, B. A., and S. Sadro. 2003. Residence time and seasonal movements of Juvenile Coho Salmon in the Ecotone and Lower Estuary of Winchester Creek, South Slough, Oregon. Transactions of the American Fisheries Society 132:546559.
  • Montgomery, D. R., E. M. Beamer, G. R. Pess, and T. P. Quinn. 1999. Channel type and salmonid spawning distribution and abundance. Canadian Journal of Fisheries and Aquatic Sciences 56:377387.
  • Myers, J. M., R. Kope, G. Bryant, D. Teel, L. Lierheimer, T. Wainright, W. Grant et al. 1998. Status review of chinook salmon from Washington, Idaho, Oregon, and California. U.S. Dept. Commer., NOAA Tech. Memo. NMFS-NWFSC-35, 443 p. Available at: http://www.nwfsc.noaa.gov/publications/techmemos/tm35/index.htm.
  • National Marine Fisheries Service, Northwest Regional Office (NOAA Fisheries). 2006. Northwest Regional HUC 6 Watershed Boundaries [ESRI shapefile]. Portland, OR.
  • Natural Resources Canada (NRC). 2001. Monthly mean minimum and maximum temperature and precipitation averages (from Mckenney et al. 2001) [computer file]. Canadian Forest Service, Sault Ste. Marie, Ontario.
  • Neira, R., N. F. Díaz, G. A. E. Gall, J. A. Gallardo, J. P. Lhorente, and A. Alert. 2006a. Genetic improvement in coho salmon (Oncorhynchus kisutch). II: Selection response for early spawning date. Aquaculture 257:18.
  • Neira, R., N. F. Díaz, G. A. E. Gall, J. A. Gallardo, J. P. Lhorente, and R. Manterola. 2006b. Genetic improvement in coho salmon (Oncorhynchus kisutch). I: Selection response and inbreeding depression on harvest weight. Aquaculture 257:917.
  • NMFS. 1992. Endangered and threatened species; threatened status for Snake River spring/summer Chinook salmon, threatened status for Snake River fall Chinook salmon. Federal Register 57:78 (22 April 1992):1465314662.
  • NOAA Fisheries. 2006. Northwest Region HUC 6 Watershed Boundaries [computer file]. NOAA Fisheries Regional Office, Portland, OR.
  • Northwest Fisheries Science Center. 2007. Northwest Salmonid ESA Populations [SDE geodatabase]. National Oceanic and Atmospheric Administration, Northwest Fisheries Science Center, Seattle, WA.
  • Northwest Power Planning Council. 2004. Salmon River Subbasin Plan. Columbia River Basin Fish and Wildlife Program. Portland, OR. [Available at: http://www.nwcouncil.org/fw/subbasinplanning/salmon/plan/]. [accessed 20 October 2007].
  • NRC. 1996. Upstream: Salmon and Society in the Pacific Northwest. National Academy Press, Washington, DC. pp. 452.
  • Omernik, J. M.. 1987. Ecoregions of the conterminous United States. Map (scale 1:7,500,000). Annals of the Association of American Geographers 77:118125.
  • Oregon Department of Fish and Wildlife. 2004. Oregon Barriers [ESRI shapefile]. Salem, OR. URL: http://nrimp.dfw.state.or.us/nrimp/default.aspx?pn=fishbarrierdata (accessed on January 2008).
  • Pess, G. R., D. R. Montgomery, T. J. Beechie, and L. Holsinger. 2002. Anthropogenic alterations to the biogeography of salmon in Puget Sound. In D. R.Montgomery, and D. B.Booth, eds. Restoration of Puget Sound Rivers, pp. 129154. University of Washington Press, Seattle, WA.
  • Quinn, T. P. 2005. The Behavior and Ecology of Pacific Salmon and Trout. University of Washington Press, Seattle, WA.
  • Quinn, T. P., and D. J. Adams. 1996. Environmental changes affecting the migratory timing of American shad and sockeye salmon. Ecology 77:11511162.
  • Quinn, T. P., and G. B. Buck. 2001. Size- and sex-selective mortality of adult sockeye salmon: bears, gulls, and fish out of water. Transactions of the American Fisheries Society 130:9951005.
  • Quinn, T. P., M. J. Unwin, and M. T. Kinnison. 2000. Evolution of temporal isolation in the wild: genetic divergence in timing of migration and breeding by introduced Chinook salmon populations. Evolution 54:13721385.
  • Quinn, T. P., L. Wetzel, S. Bishop, K. Overberg, and D. E. Rogers. 2001. Influence of breeding habitat on bear predation and age at maturity and sexual dimorphism of sockeye salmon populations. Canadian Journal of Zoology 79:17821793.
  • Rannap, R., A. Lohmus, and K. Jakobson. 2007. Consequences of coastal meadow degradation: the case of the natterjack toad (Bufo calamita) in Estonia. Wetlands 27:390398.
  • Reckhow, K. H., M. N. Beaulac, and J. T. Simpson. 1980. Modeling Phosphorus Loading and Lake Response Under Uncertainty: A Manual and Compilation of Export Coefficients. USEPA 440/5-80-011. Office of Water Regulations and Standards, U.S. Environmental Protection Agency, Washington, DC.
  • Ricker, W. E. 1981. Changes in the average size and average age of Pacific salmon. Canadian Journal of Fisheries and Aquatic Sciences 38:16361656.
  • Roff, D. A. 1997. Evolutionary Quantitative Genetics. Chapman and Hall, New York, NY.
  • Ruzycki, J. R., M. W. Flesher, R. W. Carmichael, and D. L. Eddy. 2003. Lower Snake River Compensation Plan: Oregon Evaluation Studies-Steelhead Life History, Genetics, and Kelt Reconditioning. Oregon Department of Fish and Wildlife, La Grande, OR. pp. 57.
  • Saccheri, I., M. Kuussaari, M. Kankare, P. Vikman, W. Fortelius, and I. Hanski. 1998. Inbreeding and extinction in a butterfly metapopulation. Nature 392:491494.
  • Salo, E. O. 1991. Life history of chum salmon (Oncorhynchus keta). In C.Groot, and L.Margolis, eds. Pacific Salmon Life Histories, pp. 231310. University of British Columbia Press, Vancouver, BC.
  • Sato, R. 1980. Variations in hatchability and hatching time, and estimation of the heritability for hatching time among individuals within the strain of coho salmon (Oncorhynchus kisutch). Bulletin of the National Research Institute of Aquaculture 1:2128.
  • Spatial Climate Analysis Service (SCAS). 2003. United States average monthly or annual maximum temperature and mean precipitation, 1971–2000 [computer file]. Oregon State University, Corvallis, OR. Available WEB: http://www.ocs.orst.edu/prism/products [accessed 6 December 2006].
  • Spatial Climate Analysis Service (SCAS). 2003. United States average monthly or annual maximum temperature and mean precipitation, 1971-2000[computer file].Oregon State University, OR. Available WEB: http://www.ocs.orst.edu/prism/products [accessed on December 6, 2006].
  • Scheiner, S. M. 1993. Genetics and evolution of phenotypic plasticity. Annual Review of Ecology and Systematics 24:3568.
  • Scheiner, S. M. 2002. Selection experiments and the study of phenotypic plasticity. Journal of Evolutionary Biology 15:889898.
  • Seabloom, E. W., A. P. Dobson, and D. M. Stoms. 2002. Extinction rates under nonrandom patterns of habitat loss. Proceedings of the National Academy of Sciences of the United States of America 99:1122911234.
  • Sherwood, C. R., D. A. Jay, R. B. Harvey, and C. A. Simenstad. 1990. Historical changes in the Columbia River estuary. Progress in Oceanography 25:299352.
  • Siitonen, L., and G. A. E. Gall. 1989. Response to selection for early spawn date in rainbow trout, Salmo gairdneri. Aquaculture 78:153161.
  • Silverstein, J. T., and W. K. Hershberger. 1992. Precocious maturation in coho salmon (Oncorhynchus kisutch): estimation of the additive genetic variance. Journal of Heredity 83:282286.
  • Silverstein, J. T., and W. K. Hershberger. 1995. Genetics of size and growth-rate through sexual maturity in fresh-water-reared coho salmon (Oncorhynchus kisutch). Theoretical and Applied Genetics 90:733739.
  • Simenstad, C. A., D. A. Day, and C. R. Sherwood. 1992. Impacts of watershed management on land-margin ecosystems: the Columbia River Estuary. In R. J.Naiman, ed. Watershed Management: Balancing sustainability and environmental change, pp. 266306. Springer-Verlag, New York, NY.
  • Slatkin, M. 1987. The average number of sites separating DNA sequences drawn from a subdivided population. Theoretical Population Biology 32:4244.
  • Smith, S. B. 1969. Reproductive isolation in summer and winter races of steelhead trout. In T. G.Northcote, ed. Symposium on Salmon and Trout in Streams, pp. 2138. MacMillan Lectures in Fisheries. University of British Columbia, Vancouver, BC.
  • Smoker, W. W., A. J. Gharrett, M. S. Stekoll, and J. E. Joyce. 1994. Genetic analysis of size in an anadromous population of pink salmon. Canadian Journal of Fisheries and Aquatic Sciences 51:915.
  • Smoker, W. W., A. J. Gharrett, and M. S. Stekoll. 1998. Genetic variation of return date in a population of pink salmon: a consequence of fluctuating environment and dispersive selection? Alaska Fishery Research Bulletin 5:4654.
  • Standal, M., and B. Gjerde. 1987. Genetic variation in survival of Atlantic salmon during the sea-rearing period. Aquaculture 66:197207.
  • Steen, R. P., and T. P. Quinn. 1999. Egg burial depth by sockeye salmon (Oncorhynchus nerka): implications for survival of embryos and natural selection on female body size. Canadian Journal of Zoology 77:836841.
  • Strobeck, C. 1987. Average number of nucleotide differences in a sample from a single subpopulation: a test for population subdivision. Genetics 117:149153.
  • Su, G. S., L. E. Liljedahl, and G. A. E. Gall. 1997. Genetic and environmental variation of female reproductive traits in rainbow trout (Oncorhynchus mykiss). Aquaculture 154:115124.
  • Su, G. S., L. E. Liljedahl, and G. A. E. Gall. 1999. Estimates of phenotypic and genetic parameters for within-season date and age at spawning of female rainbow trout. Aquaculture 171:209220.
  • Sultan, S. 2007. Development in context: the timely emergence of eco-devo. Trends in Ecology and Evolution 22:575582.
  • Sylvén, S., and P. Elvingson. 1992. Comparison of rainbow trout (Oncorhynchus mykiss) strains for body weight, length and age at maturity in different Swedish production systems. Aquaculture 104:3750.
  • Taylor, E. B. 1990. Environmental correlates of life-history variation in juvenile Chinook salmon, Oncorhynchus tshawytscha (Walbaum). Journal of Fish Biology 37:117.
  • Theriault, V., D. Garant, L. Bernatchez, and J. J. Dodson. 2007. Heritability of life-history tactics and genetic correlation with body size in a natural population of brook charr (Salvelinus fontinalis). Journal of Evolutionary Biology 20:22662277.
  • Thorpe, J. E., M. Mangel, N. B. Metcalfe, and F. A. Huntingford. 1998. Modeling the proximate basis of salmonid life-history variation, with application to Atlantic salmon, Salmo salar L. Evolutionary Ecology 12:581599.
  • Thrower, F. P., J. J. Hard, and J. E. Joyce. 2004. Genetic architecture of growth and early life-history transitions in anadromous and derived freshwater populations of steelhead. Journal of Fish Biology 65:286307.
  • Tschaplinski, P. J., and G. F. Hartman. 1983. Winter distribution of juvenile coho salmon (Oncorhynchus kisutch) before and after logging in Carnation Creek, British Columbia, and some implications for overwinter survival. Canadian Journal of Fisheries and Aquatic Sciences 40:452461.
  • United States Environmental Protection Agency (USEPA). 2007. Level IV Ecoregions. Available at: http://www.epa.gov/wed/pages/ecoregions/level_iv.htm (accessed on 2 October 2007).
  • Unwin, M. J., T. P. Quinn, M. T. Kinnison, and N. C. Boustead. 2000. Divergence in juvenile growth and life history in two recently colonized and partially isolated Chinook salmon populations. Journal of Fish Biology 57:943960.
  • U.S. Environmental Protection Agency (USEPA). 2005. Environmental Monitoring and Assessment Program [computer file]. EPA/ORD/NER/ESD Landscape Ecology Branch, Las Vegas, NV. (http://www.epa.gov/esd/land-sci/emap_west_browser/pages/wemap_download.htm [accessed on 6 December, 2006]).
  • U.S. Environmental Protection Agency, and U.S. Geological Survey (USEPA/USGS). 2005. National Hydrography Dataset (NHDPlus) [computer file]. Available at: http://www.horizon-systems.com/nhdplus/ [accessed 20 March 2008].
  • United States Geological Survey (USGS). 2005. Digital Elevation Models (DEMs). Available at: http://edc.usgs.gov/products/elevation/dem.html [accessed on December 6, 2006]
  • United States Geological Survey (USGS). 2005. Digital Elevation Models (DEMs). Available at: http://edc.usgs.gov/products/elevation/dem.html [accessed 6 December 2006].
  • Van Hyning, J. M. 1973. Factors affecting the abundance of fall chinook salmon in the Columbia River. Fish Commission of Oregon Research Report 4:187.
  • Vitousek, P. M., H. A. Mooney, J. Lubchenco, and J. M. Melillo. 1997. Human Domination of Earth’s Ecosystems. Science 277:494499.
  • Waples, R. S. 1995. Evolutionary significant units and the conservation of biological diversity under the Endangered Species Act. In J. L.Nielsen, ed. Evolution and the Aquatic Ecosystem: Defining Unique Units in Population Conservation, pp. 827. American Fisheries Society, Bethesda, Maryland.
  • Waples, R. S. 2002. Definition and estimation of effective population size in the conservation of endangered species. In S. R.Beissinger, and D. R.McCullogh, eds. Population Viability Analysis, pp. 147168. University of Chicago Press, Chicago, IL.
  • Waples, R. S., R. P. Jones Jr, B. R. Beckman, and G. A. Swan. 1991. Status Review for Snake River Fall Chinook Salmon. U.S. Dep. Commer., NOAA Tech. Memo. NMFS F/NWC-201. 73 p.
  • Waples, R. S., R. G. Gustafson, L. A. Weitkamp, J. M. Myers, O. W. Johnson, P. J. Busby, J. J. Hard et al. 2001. Characterizing diversity in salmon from the Pacific Northwest. Journal of Fish Biology 59:141.
  • Wayne, R. K., N. Lehman, D. Girman, P. J. P. Gogan, D. A. Gilbert, K. Hansen, R. O. Peterson et al. 1991. Conservation Genetics of the Endangered Isle-Royale Gray Wolf. Conservation Biology 5:4151.
  • Webb, J. H., and H. A. McLay. 1996. Variation in the time of spawning of Atlantic salmon (Salmo salar) and its relationship to temperature in the Aberdeenshire Dee, Scotland. Canadian Journal of Fisheries and Aquatic Sciences 53:27392744.
  • Whitlock, M. C., and N. H. Barton. 1997. The effective size of a subdivided population. Genetics 146:427441.
  • Wilcove, D. S., D. Rothstein, J. Dubow, A. Phillips, and E. Losos. 1998. Quantifying threats to imperiled species in the United States. BioScience 48:607615.
  • Wild, V., H. Simianer, H. M. Gjoen, and B. Gjerde. 1994. Genetic parameters and genotype X environment interaction for early sexual maturity in Atlantic salmon (Salmo salar). Aquaculture 128:5165.
  • Willi, Y., J. Van Buskirk, and A. A. Hoffman. 2006. Limits to the adaptive potential of small populations. Annual Review of Ecology, Evolution and Systematics 37:433458.
  • Willi, Y., J. Van Buskirk, B. Schmid, and M. Fischer. 2007. Genetic isolation of fragmented populations is exacerbated by drift and selection. Journal of Evolutionary Biology 20:534542.
  • Williams, T. H., E. P. Bjorkstedt, W. Duffy, D. Hillemeier, G. Kautsky, T. Lisle, M. McCain et al. 2006. Historical population structure of coho salmon in the Southern Oregon / Northern California Coasts Evolutionarily Significant Unit. NOAA Technical Memo. NMFS-SWFSC-390.
  • Williams, J. G., R. W. Zabel, R. S. Waples, J. A. Hutchings, and W. P. Connor. 2008. Potential for anthropogenic disturbances to influence evolutionary change in the life history of a threatened salmonid. Evolutionary Applications 1:271285.
  • Wilson, A. J., G. McDonald, H. K. Moghadam, C. M. Herbinger, and M. M. Ferguson. 2003. Marker-assisted estimation of quantitative genetic parameters in rainbow trout, Oncorhynchus mykiss. Genetical Research 81:145156.
  • Zar, J. H.. 1999. Biostatistical Analysis, 4th edn. Prentice Hall, Upper Saddle River, NJ.
  • Zimmerman, C. E., and G. H. Reeves. 2000. Population structure of sympatric anadromous and nonanadromous Oncorhynchus mykiss: evidence from spawning surveys and otolith microchemistry. Canadian Journal of Fisheries and Aquatic Sciences 57:21522162.