SEARCH

SEARCH BY CITATION

Literature cited

  • Adams, B., and A. Sasaki. 2007. Cross-immunity, invasion and coexistence of pathogen strains in epidemiological models with one-dimensional antigenic space. Mathematical Biosciences 210:680699.
  • Adams, B., E. C. Holmes, C. Zhang, M. P. Mammen Jr, S. Nimmannitya, S. Kalayanarooj, and M. Boots. 2006. Cross-protective immunity can account for the alternating epidemic pattern of dengue virus serotypes circulating in Bangkok. Proceedings of the National Academy of Sciences of the United States of America 103:1423414239.
  • Ahmed, R., and D. Gray. 1996. Immunological memory and protective immunity: Understanding their relation. Science 272:5460.
  • Van Den Berg, H. A., and D. A. Rand. 2004. Dynamics of T cell activation threshold tuning. Journal of Theoretical Biology 228:397416.
  • Van Den Berg, H. A., and D. A. Rand. 2007. Quantitative theories of T-cell responsiveness. Immunology Reviews 216:8192.
  • Van Den Berg, H. A., D. A. Rand, and N. J. Burroughs. 2001. A reliable and safe T cell repertoire based on low-affinity T cell receptors. Journal of Theoretical Biology 209:465486.
  • Boomsma, J. J., J. Nielsen, L. Sundstrom, N. J. Oldham, J. Tentschert, H. C. Petersen, and E. D. Morgan. 2003. Informational constraints on optimal sex allocation in ants. Proceedings of the National Academy of Sciences of the United States of America 100:87998804.
  • Borghans, J. A. M., and R. J. De Boer. 2002. Memorizing innate instructions requires a sufficiently specific adaptive immune system. International Immunology 14:525532.
  • Borghans, J. A. M., A. J. Noest, and R. J. De Boer. 1999. How specific should immunological memory be? The Journal of Immunology 163:569575.
  • Boudinot, P., M. E. Marriotti-Ferrandiz, L. D. Pasquier, A. Benmansour, P. A. Cazenave, and A. Six. 2008. New perspectives for large-scale repertoire analysis of immune receptors. Molecular Immunology 45:24372445.
  • Brehm, M. A., A. K. Pinto, K. A. Daniels, J. P. Schneck, R. M. Welsh, and L. K. Selin. 2002. T cell immunodominance and maintenance of memory regulated by unexpectedly cross-reactive pathogens. Nature Immunology 3:627634.
  • Burton-Chellew, M. N., T. Koevoets, B. K. Grillenberger, E. M. Sykes, S. L. Underwood, K. Bijlsma, J. Gadau et al. 2008. Facultative sex ratio adjustment in natural populations of wasps: cues of local mate competition and the precision of adaptation. The American Naturalist 172:393404.
  • Carneiro, J., T. Paixao, D. Milutinovic, J. Sousa, K. Leon, R. Gardner, and J. Faro. 2005. Immunological self-tolerance: lessons from mathematical modeling. Journal of Computational and Applied Mathematics 184:77100.
  • Casadevall, A., and L. A. Pirofski. 2007. Antibody-mediated protection through cross-reactivity introduces a fungal heresy into immunological dogma. Infection and Immunity 75:50745078.
  • Dall, S. R., L. A. Giraldeau, O. Olsson, J. M. McNamara, and D. W. Stephens. 2005. Information and its use by animals in evolutionary ecology. Trends in Ecology and Evolution 20:187193.
  • Deem, M. W., and H. Y. Lee. 2003. Sequence space localization in the immune system response to vaccination and disease. Physical Review Letters 91:068101.
  • Donermeyer, D. L., K. S. Weber, D. M. Kranz, and P. M. Allen. 2006. The study of high-affinity TCRs reveals duality in T cell recognition of antigen: specificity and degeneracy. The Journal of Immunology 177:69116919.
  • Endy, T. P., A. Nisalak, S. Chunsuttitwat, D. W. Vaughn, S. Green, F. A. Ennis, A. L. Rothman et al. 2004. Relationship of preexisting dengue virus (DV) neutralizing antibody levels to viremia and severity of disease in a prospective cohort study of DV infection in Thailand. The Journal of Infectious Diseases 189:9901000.
  • Fesel, C., L. F. Goulart, A. Silva Neto, A. Coelho, C. J. Fontes, E. M. Braga, and N. M. Vaz. 2005. Increased polyclonal immunoglobulin reactivity toward human and bacterial proteins is associated with clinical protection in human Plasmodium infection. Malaria Journal 4:5.
  • Frank, S. A. 2002. Immunology and Evolution of Infectious Disease. Princeton, NJ, Princeton University Press.
  • Gardner, K. E., T. D. Seeley, and N. W. Calderone. 2007. Hypotheses on the adaptiveness or non-adaptiveness of the directional imprecision in the honey bee’s waggle dance (Hymenoptera : Apidae : Apis mellifera). Entomologia Generalis 29:285298.
  • Gog, J. R., and B. T. Grenfell. 2002. Dynamics and selection of many-strain pathogens. Proceedings of the National Academy of Sciences of the United States of America 99:1720917214.
  • Goncalvez, A. P., R. E. Engle, M. St Claire, R. H. Purcell, and C. J. Lai. 2007. Monoclonal antibody-mediated enhancement of dengue virus infection in vitro and in vivo and strategies for prevention. Proceedings of the National Academy of Sciences of the United States of America 104:94229427.
  • Grafen, A. 1999. Formal Darwinism, the individual-as-maximizing-agent analogy and bet-hedging. Proceedings of the Royal Society of London Series B-Biological Sciences 266:799803.
  • Grafen, A. 2006. Optimization of inclusive fitness. Journal of Theoretical Biology 238:541563.
  • Gupta, V., D. J. Earl, and M. W. Deem. 2006. Quantifying influenza vaccine efficacy and antigenic distance. Vaccine 24:38813888.
  • Haghdoost, A. A., and N. Alexander. 2007. Systematic review and meta-analysis of the interaction between Plasmodium falciparum and Plasmodium vivax in humans. The Journal of Vector Borne Diseases 44:3343.
  • Janeway Jr, C. A., and R. Medzhitov. 2002. Innate immune recognition. Annual Review of Immunology 20:197216.
  • Janeway, C. A., P. Travers, M. Walport, and M. J. Shlomchik. 2001. Immunobiology: The Immune System in Health and Disease. Garland Publishing, New York.
  • King, O. D., and J. Masel. 2007. The evolution of bet-hedging adaptations to rare scenarios. Theoretical Population Biology 72:560575.
  • Koelle, K., S. Cobey, B. Grenfell, and M. Pascual. 2006a. Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans. Science 314:18981903.
  • Koelle, K., M. Pascual, and M. Yunus. 2006b. Serotype cycles in cholera dynamics. Proceedings of the Royal Society Series B 273:28792886.
  • Langman, R. E., and M. Cohn. 1999. Away with words: commentary on the Atlan-Cohen essay ‘Immune information, self-organization and meaning’. International Immunology 11:865870.
  • Lepp, P. W., M. M. Brinig, C. C. Ouverney, K. Palm, G. C. Armitage, and D. A. Relman. 2004. Methanogenic Archaea and human periodontal disease. Proceedings of the National Academy of Sciences of the United States of America 101:61766181.
  • Levie, K., I. Leroux-Roels, K. Hoppenbrouwers, A. D. Kervyn, C. Vandermeulen, S. Forgus, G. Leroux-Roels et al. 2008. An adjuvanted, low-dose, pandemic influenza A (H5N1) vaccine candidate is safe, immunogenic, and induces cross-reactive immune responses in healthy adults. The Journal of Infectious Diseases 198:642649.
  • Lipsitch, M., and J. J. O’Hagan. 2007. Patterns of antigenic diversity and the mechanisms that maintain them. Journal of the Royal Society Interface 4:787802.
  • Liu, X. S., J. Dyer, G. R. Leggatt, G. J. Fernando, J. Zhong, R. Thomas, and I. H. Frazer. 2006. Overcoming original antigenic sin to generate new CD8 T cell IFN-gamma responses in an antigen-experienced host. The Journal of Immunology 177:28732879.
  • Louzoun, Y., M. Weigert, and G. Bhanot. 2003. Dynamical analysis of a degenerate primary and secondary humoral immune response. Bulletin of Mathematical Biology 65:535545.
  • Lyashchenko, K., R. Colangeli, M. Houde, H. Al Jahdali, D. Menzies, and M. L. Gennaro. 1998. Heterogeneous antibody responses in tuberculosis. Infection and Immunity 66:39363940.
  • Maizels, R. M., A. Balic, N. Gomez-Escobar, M. Nair, M. D. Taylor, and J. E. Allen. 2004. Helminth parasites – masters of regulation. Immunological Reviews 201:89116.
  • Martin, L. B., Z. M. Weil, and R. J. Nelson. 2007. Immune defense and reproductive pace of life in Peromyscus mice. Ecology 88:25162528.
  • Mota, M. M., K. N. Brown, V. E. Do Rosario, A. A. Holder, and W. Jarra. 2001. Antibody recognition of rodent malaria parasite antigens exposed at the infected erythrocyte surface: specificity of immunity generated in hyperimmune mice. Infection and Immunity 69:25352541.
  • Mwatha, J. K., F. M. Jones, G. Mohamed, C. W. A. Naus, E. Riley, A. E. Butterworth, G. Kimani et al. 2003. Associations between anti-Schistosoma mansoni and anti-Plasmodium falciparum antibody responses and hepatosplenomegaly, in Kenyan schoolchildren. The Journal of Infectious Diseases 187:13371341.
  • Nagao, Y., M. Kimura-Sato, P. Chavalitshewinkoon-Petmitr, S. Thongrungkiat, P. Wilairatana, T. Ishida, P. Tan-Ariya et al. 2008. Suppression of Plasmodium falciparum by serum collected from a case of Plasmodium vivax infection. Malaria Journal 7:113.
  • Nagy, G., L. Emody, and T. Pal. 2008. Strategies for the development of vaccines conferring broad-spectrum protection. International Journal of Medical Microbiology 298:379395.
  • Naus, C. W. A., F. M. Jones, M. Z. Satti, S. Joseph, E. Riley, G. Kimani, J. K. Mwatha et al. 2003. Serological responses among individuals in areas where both schistosomiasis and malaria are endemic: cross-reactivity between Schistosoma mansoni and Plasmodium falciparum. The Journal of Infectious Diseases 187:12721282.
  • Oprea, M., and S. Forrest. 1998. Simulated evolution of antibody gene libraries under pathogen selection. IEEE Transactions on Systems, Man, and Cybernetics 4:37933798.
  • Oprea, M., and S. Forrest. 1999. How the Immune System Generates Diversity: Pathogen Space Coverage with Random and Evolved Antibody Libraries, Genetic and Evolutionary Computation Conference. Morgan Kauffman, Orlando, Florida.
  • Page, K. R., A. L. Scott, and Y. C. Manabe. 2006. The expanding realm of heterologous immunity: friend or foe? Cellular Microbiology 8:185196.
  • Pancer, Z., and M. D. Cooper. 2006. The evolution of adaptive immunity. Annual Review of Immunology 24:497518.
  • Quan, F. S., R. W. Compans, H. H. Nguyen, and S. M. Kang. 2008. Induction of heterosubtypic immunity to influenza virus by intranasal immunization. Journal of Virology 82:13501359.
  • Recher, M., K. S. Lang, L. Hunziker, S. Freigang, B. Eschli, N. L. Harris, A. Navarini et al. 2004. Deliberate removal of T cell help improves virus-neutralizing antibody production. Nature Immunology 5:934942.
  • Recker, M., and S. Gupta. 2005. A model for pathogen population structure with cross-protection depending on the extent of overlap in antigenic variant repertoires. Journal of Theoretical Biology 232:363373.
  • Restif, O., and B. T. Grenfell. 2007. Vaccination and the dynamics of immune evasion. Journal of the Royal Society Interface 4:143153.
  • Rothman, A. L. 2004. Dengue: defining protective versus pathologic immunity. The Journal of Clinical Investigation 113:946951.
  • Salinas-Carmona, M. C., and I. Perez-Rivera. 2004. Humoral immunity through immunoglobulin M protects mice from an experimental actinomycetoma infection by Nocardia brasiliensis. Infection and Immunity 72:55975604.
  • Sandbulte, M. R., G. S. Jimenez, A. C. Boon, L. R. Smith, J. J. Treanor, and R. J. Webby. 2007. Cross-reactive neuraminidase antibodies afford partial protection against H5N1 in mice and are present in unexposed humans. PLoS Medicine 4:e59.
  • Sato, K., T. Morishita, E. Nobusawa, K. Tonegawa, K. Sakae, S. Nakajima, and K. Nakajima. 2004. Amino-acid change on the antigenic region B1 of H3 haemagglutinin may be a trigger for the emergence of drift strain of influenza A virus. Epidemiology and Infection 132:399406.
  • Scherer, A., A. Noest, and R. J. De Boer. 2004. Activation-threshold tuning in an affinity model for the T-cell repertoire. Proceedings of the Royal Society Series B 271:609616.
  • Scherer, A., M. Salathe, and S. Bonhoeffer. 2006. High epitope expression levels increase competition between T cells. PLoS Computational Biology 2:e109.
  • Seger, J., and H. J. Brockman. 1987. What is bet-hedging?. In P. H.Harvey, and L.Partridge, eds. Oxford Surveys in Evolutionary Biology, pp. 182211. Oxford, Oxford University Press.
  • Shuker, D. M., and S. A West. 2004. Information constraints and the precision of adaptation: sex ratio manipulation in wasps. Proceedings of the National Academy of Sciences of the United States of America 101:1036310367.
  • Smith, D. J., S. Forrest, R. R. Hightower, and A. S. Perelson. 1997. Deriving shape space parameters from immunological data. Journal of Theoretical Biology 189:141150.
  • Smith, D. J., A. S. Lapedes, J. C. De Jong, T. M. Bestebroer, G. F. Rimmelzwaan, A. D. Osterhaus, and R. A. Fouchier. 2004. Mapping the antigenic and genetic evolution of influenza virus. Science 305:371376.
  • Stephens, D. W.. 2007. Models of information use. In D. W.Stephens, J. S.Brown, and R. C.Ydenberg, eds. Foraging: Behavior and Ecology, pp. 3158. Chicago, University of Chicago Press.
  • Stephens, D. W., J. S. Brown, and R. C. Ydenberg. 2007. Foraging: Behavior and Ecology. Chicago, University of Chicago Press.
  • Sun, J., D. J. Earl, and M. W. Deem. 2005. Glassy dynamics in the adaptive immune response prevents autoimmune disease. Physical Review Letters 95:148104.
  • Tanner, D. A., and K. Visscher. 2006. Do honey bees tune error in their dances in nectar-foraging and house-hunting? Behavioral Ecology and Sociobiology 59:571576.
  • Tesh, R. B., A. P. Travassos da Rosa, H. Guzman, T. P. Araujo, and S. Y. Xiao. 2002. Immunization with heterologous flaviviruses protective against fatal West Nile encephalitis. Emerging Infectious Diseases 8:245251.
  • Tortorella, D., B. E. Gewurz, M. H. Furman, D. J. Schust, and H. L. Ploegh. 2000. Viral subversion of the immune system. Annual Review of Immunology 18:861926.
  • Urbani, S., B. Amadei, P. Fisicaro, M. Pilli, G. Missale, A. Bertoletti, and C. Ferrari. 2005. Heterologous T cell immunity in severe hepatitis C virus infection. The Journal of Experimental Medicine 201:675680.
  • Viney, M. E., E. M. Riley, and K. L. Buchanan. 2005. Optimal immune responses: immunocompetence revisited. Trends in Ecology and Evolution 20:665669.
  • Wearing, H. J., and P. Rohani. 2006. Ecological and immunological determinants of dengue epidemics. Proceedings of the National Academy of Sciences of the United States of America 103:1180211807.
  • Weidenmuller, A., and T. D. Seeley. 1999. Imprecision in waggle dances of the honeybee (Apis mellifera) for nearby food sources: error or adaptation? Behavioral Ecology and Sociobiology 46:190199.
  • West, S. A., and B. C. Sheldon. 2002. Constraints in the evolution of sex ratio adjustment. Science 295:16851688.
  • Yamshchikov, G., V. Borisevich, C. W. Kwok, R. Nistler, J. Kohlmeier, A. Seregin, E. Chaporgina et al. 2005. The suitability of yellow fever and Japanese encephalitis vaccines for immunization against West Nile virus. Vaccine 23:47854792.