SEARCH

SEARCH BY CITATION

Literature cited

  • Achtak, H., M. Ater, A. Oukabli, S. Santoni, F. Kjellberg, and B. Khadari. 2010. Traditional agroecosystems as conservatories and incubators of cultivated plant varietal diversity: the case of fig (Ficus carica L.) in Morocco. BMC Plant Biology10:28.
  • Alvarez, N., N. Arrigo, and Intrabiodiv Consortium. 2008. SIMIL: an R (CRAN) scripts collection for computing genetic structure similarities based on STRUCTURE 2 outputs. Molecular Ecology Resources8:757762.
  • Arrigo, N., R. Guadagnuolo, S. Lappe, S. Pasche, C. Parisod, and F. Felber. 2011. Gene flow between wheat and wild relatives: empirical evidence from Aegilops geniculata, Ae. neglecta and Ae. triuncialis. Evolutionary Applications4:685695.
  • Aumeeruddy-Thomas, Y., Y. H’mimsa, M. Ater, and B. Khadari. 2009. Beyond the divide between wild and domesticated: spatiality, domesticity and practices pertaining to fig (Ficus carica L.) and olive (Olea europaea L.) agroecosystems in Morocco. Brussels: Crops and people: choices and diversity through time. Earth EU.
  • Austerlitz, F., S. Mariette, N. Machon, P. H. Gouyon, and B. Godelle. 2000. Effects of colonization processes on genetic diversity: differences between annual plants and tree species. Genetics154:13091321.
  • Bandelt, H. J., P. Forster, and A. Rohl. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution16:3748.
  • Beerli, P., and J. Felsenstein. 2001. Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proceedings of The National Academy of Sciences of the United States Of America98:45634568.
  • Breton, C., C. Pinatel, F. Medail, F. Bonhomme, and A. Berville. 2008. Comparison between classical and Bayesian methods to investigate the history of olive cultivars using SSR-polymorphisms. Plant Science175:524532.
  • Browicz, K., and D. Zohary. 1996. The genus Amygdalus L (Rosaceae): species relationships, distribution and evolution under domestication. Genetic Resources and Crop Evolution43:229247.
  • Caldwell, K. S., J. Dvorak, E. S. Lagudah, E. Akhunov, M. C. Luo, P. Wolters, and W. Powell. 2004. Sequence polymorphism in polyploid wheat and their D-genome diploid ancestor. Genetics167:941947.
  • Cipriani, G., G. Lot, W. G. Huang, M. T. Marrazzo, E. Peterlunger, and R. Testolin. 1999. AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L) Batsch]: isolation, characterisation and cross-species amplification in Prunus. Theoretical and Applied Genetics99:6572.
  • Coart, E., S. Van Glabeke, M. De Loose, A. S. Larsen, and I. Roldan-Ruiz. 2006. Chloroplast diversity in the genus Malus: new insights into the relationship between the European wild apple [Malus sylvestris (L.) Mill.] and the domesticated apple (Malus domestica Borkh.). Molecular Ecology15:21712182.
  • Corredor, E., M. Roman, E. Garcia, E. Perera, P. Arus, and T. Naranjo. 2004. Physical mapping of rDNA genes establishes the karyotype of almond. Annals of Applied Biology144:219222.
  • Denisov, V. P.1988. Almond genetic resources in the USSR and their use in production and breeding. Acta Horticulturae224:299306.
  • Delplancke, M.2011. Histoire évolutive de l’amandier cultivé (Prunus dulcis) en Méditerranée: regards croisés sur la domestication, dialogue entre la biologie et l’ethnobiologie, Biologie des populations, Université Montpellier 2, Montpellier.
  • Dicenta, F., and J. E. Garcia. 1993. Inheritance of self-compatibility in almond. Heredity70:313317.
  • Dirlewanger, E., P. Cosson, M. Tavaud, M. J. Aranzana, C. Poizat, A. Zanetto, P. Arus et al.2002. Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theoretical and Applied Genetics105:127138.
  • Doebley, J. F., B. S. Gaut, and B. D. Smith. 2006. The molecular genetics of crop domestication. Cell127:13091321.
  • Ellstrand, N. C., H. C. Prentice, and J. F. Hancock. 1999. Gene flow and introgression from domesticated plants into their wild relatives. Annual Review of Ecology and Systematics30:539563.
  • Evanno, G., S. Regnaut, and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology14:26112620.
  • Excoffier, L., and E. L. L. Heidi. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources10:564567.
  • FAO. 2008. FAO Statistical Databases: Agriculture. FAO, Rome.
  • Felber, F., G. Kozlowski, N. Arrigo, and R. Guadagnuolo. 2007. Genetic and ecological consequences of transgene flow to the wild flora. Advances in Biochemical Engineering/Biotechnology107:173205.
  • Fladung, M., D. Ewald, A. Balestrazzi, G. Allegro, and M. Confalonieri. 2006. Genetically modified trees expressing genes for insect pest resistance. In M. Fladung, and D. Edwalds, eds. Tree Transgenesis, pp. 253273. Springer, Berlin, Heidelberg.
  • Glemin, S., and T. Bataillon. 2009. A comparative view of the evolution of grasses under domestication. New Phytologist183:273290.
  • Godini, A.2000. About the possible relationship between Amygdalus webbii Spach and Amygdalus communis L. NUCIS Newsletter9:1719.
  • Goodwillie, C., S. Kalisz, and C. G. Eckert. 2005. The evolutionary enigma of mixed mating systems in plants: occurrence, theoretical explanations, and empirical evidence. Annual Review of Ecology Evolution and Systematics36:4779.
  • Gradziel, T. M.2009. Almond (Prunus dulcis) breeding. In S. Mohan Jain, and P. M. Priyadarshan, eds. Breeding Plantation Tree Crops: Temperate Species, pp. 131. Springer, New York.
  • Grasselly, C.1977. Réflexions sur les caractéristiques des espèces sauvages d’amandier et sur leur utilisation éventuelle dans des programmes d’amélioration génétique. In 3e Colloque du groupe de recherche et d’étude méditerranéen pour le pistachier et l’amandier. GREMPA, CIHEAM, Bari, Italy.
  • Grasselly, C., and P. Crossa-Raynaud. 1980. L’amandier. Techniques agricoles et productions méditerranéennes. G.P. Maisonneuve et Larose, Paris, XII
  • Haudry, A., A. Cenci, C. Ravel, T. Bataillon, D. Brunel, C. Poncet, I. Hochu et al.2007. Grinding up wheat: a massive loss of nucleotide diversity since domestication. Molecular Biology and Evolution24:15061517.
  • van Heerwaarden, J., J. Doebley, W. H. Briggs, J. C. Glaubitz, M. M. Goodman, J. J. Sanchez Gonzalez, and J. Ross-Ibarra. 2011. Genetic signals of origin, spread, and introgression in a large sample of maize landraces. Proceedings of the National Academy of Sciences of the United States of America108:10881092.
  • Hollingsworth, P. M., I. K. Dawson, W. P. Goodall-Copestake, J. E. Richardson, J. C. Weber, C. S. Montes, and R. T. Pennington. 2005. Do farmers reduce genetic diversity when they domesticate tropical trees? A case study from Amazonia. Molecular Ecology14:497501.
  • Kron, P., and B. C. Husband. 2009. Hybridization and the reproductive pathways mediating gene flow between native Malus coronaria and domestic apple, M. domestica. Botany-Botanique87:864874.
  • Ladizinsky, G.1999. On the origin of almond. Genetic Resources and Crop Evolution46:143147.
  • Lynch, M.2010. Scaling expectations for the time to establishment of complex adaptations. Proceedings Of The National Academy Of Sciences Of The United States Of America107:1657716582.
  • Mariette, S., M. Tavaud, U. Arunyawat, G. Capdeville, M. Millan, and F. Salin. 2010. Population structure and genetic bottleneck in sweet cherry estimated with SSRs and the gametophytic self-incompatibility locus. BMC Genetics11:77.
  • Martinoli, D., and S. Jacomet. 2004. Identifying endocarp remains and exploring their use at Epipalaeolithic Okuzini in southwest Anatolia, Turkey. Vegetation History And Archaeobotany13:4554.
  • Matsuoka, Y., Y. Vigouroux, M. M. Goodman, G. J. Sanchez, E. Buckler, and J. Doebley. 2002. A single domestication for maize shown by multilocus microsatellite genotyping. Proceedings of the National Academy of Sciences of the United States of America99:60806084.
  • Myles, S., A. R. Boyko, C. L. Owens, P. J. Brown, F. Grassi, M. K. Aradhya, B. Prins et al.2011. Genetic structure and domestication history of the grape. Proceedings of the National Academy of Sciences of the United States of America108:35303535.
  • Ohta, S., T. Katsuki, T. Tanaka, T. Hayashi, Y. Sato, and T. Yamamoto. 2005. Genetic variation in flowering cherries (Prunus subgenus cerasus) characterized by SSR markers. Breeding Science55:415424.
  • Ortega, E., and F. Dicenta. 2003. Inheritance of self-compatibility in almond: breeding strategies to assure self-compatibility in the progeny. Theoretical and Applied Genetics106:904911.
  • Papa, R.2005. Gene flow and introgression between domesticated crops and their wild relatives. In Proceedings of the International Workshop on the Role of Biotechnology for the Characterisation and Conservation of Crop, Forestry, Animal and Fishery Genetic Resources. Turin, Italy.
  • Papa, R., E. Bellucci, M. Rossi, S. Leonardi, D. Rau, P. Gepts, L. Nanni et al.2007. Tagging the signatures of domestication in common bean (Phaseolus vulgaris) by means of pooled DNA samples. Annals of Botany100:10391051.
  • Petit, R. J., and L. Excoffier. 2009. Gene flow and species delimitation. Trends in Ecology & Evolution24:386393.
  • Petit, R. J., and A. Hampe. 2006. Some evolutionary consequences of being a tree. Annual Review of Ecology Evolution and Systematics37:187214.
  • Petit, R. J., A. El Mousadik, and O. Pons. 1998. Identifying populations for conservation on the basis of genetic markers. Conservation Biology12:844855.
  • Petit, R. J., J. Duminil, S. Fineschi, A. Hampe, D. Salvini, and G. G. Vendramin. 2005. Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Molecular Ecology14:689701.
  • Potter, D., F. Gao, P. E. Bortiri, S. H. Oh, and S. Baggett. 2002. Phylogenetic relationships in Rosaceae inferred from chloroplast matK and trnL-trnF nucleotide sequence data. Plant Systematics and Evolution231:7789.
  • Powell, W., M. Morgante, C. Andre, J. W. McNicol, G. C. Machray, J. J. Doyle, S. V. Tingey et al.1995. Hypervariable microsatellites provide a general source of polymorphic DNA markers for the chloroplast genome. Current Biology5:10231029.
  • Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics155:945959.
  • R Foundation for Statistical Computing. 2011. R: A Language and Environment for Statistical Computing, Reference Index Version 2.13.1. R Foundation for Statistical Computing, Vienna, Austria.
  • Rieseberg, L. H.1997. Hybrid origins of plant species. Annual Review of Ecology and Systematics28:359389.
  • Rieseberg, L. H., J. Whitton, and C. R. Linder. 1996. Molecular marker incongruence in plant hybrid zones and phylogenetic trees. Acta Botanica Neerlandica45:243262.
  • Scorza, R., J. Hily, A. Callahan, T. Malinowski, M. Cambra, N. Capote, I. Zagrai et al.2007. Deregulation of plum pox resistant transgenic plum ‘HoneySweet’. In Proceedings of the International Symposium on Biotechnology of Temperate Fruit Crops and Tropical Species.
  • Socias i Company, R.1998. Fruit tree genetics at a turning point: the almond example. Theoretical and Applied Genetics96:588601.
  • Testolin, R., T. Marrazzo, G. Cipriani, R. Quarta, I. Verde, M. T. Dettori, M. Pancaldi et al.2000. Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome43:512520.
  • Trucco, F., T. Tatum, A. L. Rayburn, and P. J. Tranel. 2009. Out of the swamp: unidirectional hybridization with weedy species may explain the prevalence of Amaranthus tuberculatus as a weed. New Phytologist184:819827.
  • Willcox, G., S. Fornite, and L. Herveux. 2008. Early Holocene cultivation before domestication in northern Syria. Vegetation History and Archaeobotany17:313325.
  • Willcox, G., R. Buxo, and L. Herveux. 2009. Late Pleistocene and early Holocene climate and the beginnings of cultivation in northern Syria. Holocene19:151158.
  • Zeder, M. A.2006. Documenting Domestication: New Genetic and Archaeological Paradigms. University of California Press, Berkeley.
  • Zeinalabedini, M., M. Khayam-Nekoui, V. Grigorian, T. M. Gradziel, and P. Martinez-Gomez. 2010. The origin and dissemination of the cultivated almond as determined by nuclear and chloroplast SSR marker analysis. Scientia Horticulturae125:593601.
  • Zohary, D.1984. Modes of evolution of plants under domestication. In W. F. Grant, ed. Plant Biosystematics, pp. 579596. Academic Press, Toronto, ON.