Figure S1. Allele frequencies by marker and species.

Figure S2. Histograms of probabilities for theNewHybrids assignments. X-axis is the lower bound of eachprobability bin.

Figure S3. Maps of forested sites showing clustering of hybrids.

Table S1. Counts in each category under theuniform and Jeffrey’s prior.

Table S2. Efficiency, accuracy and performance of NewHybrids on simulated datasets with different thresholds.

Table S3. Distances in clusters of hybrids.

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