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Fig. S1 Matrix of nucleotide differences per site calculated for 44 sequences representing 28 species from the classes Coscinodiscophyceae (up), Mediophyceae (middle) and Bacillariophyceae (down) using marker SSU.

Fig. S2 Matrix of nucleotide differences per site calculated for 44 sequences representing 28 species from the classes Coscinodiscophyceae (up), Mediophyceae (middle) and Bacillariophyceae (down) using marker cox I.

Fig. S3 Matrix of nucleotide differences per site calculated for 44 sequences representing 28 species from the classes Coscinodiscophyceae (up), Mediophyceae (middle) and Bacillariophyceae (down) using marker 5.8S+ITS-2.

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