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Fig. S1 The SNP at site 120 of the consensus sequence has a half-height peak in the trace files relative to peaks at homozygous sites.

Fig. S2 A SNP site in the STK data set including the use of IUPAC code for a heterozygote site, M indicates the presence of both A or C.

Fig. S3 Computationally phased haplotypes of Cellulase, CHS, F3H and STK by PHASE. Shading indicates sites with incorrect phase compared with experimental phasing by AS-PCR.

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Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.