SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing
Article first published online: 17 FEB 2011
© 2011 Blackwell Publishing Ltd
Molecular Ecology Resources
Special Issue: SNP Development in Non-Model Organisms
Volume 11, Issue Supplement s1, pages 81–92, March 2011
How to Cite
GERALDES, A., PANG, J., THIESSEN, N., CEZARD, T., MOORE, R., ZHAO, Y., TAM, A., WANG, S., FRIEDMANN, M., BIROL, I., JONES, S. J. M., CRONK, Q. C. B. and DOUGLAS, C. J. (2011), SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing. Molecular Ecology Resources, 11: 81–92. doi: 10.1111/j.1755-0998.2010.02960.x
- Issue published online: 17 FEB 2011
- Article first published online: 17 FEB 2011
- Received 6 August 2010; revision received 5 November 2010; accepted 15 November 2010
Data S1 Master SNP report with information for each putative SNP position found across all 20 Populus trichocarpa accessions. This report is deposited at Dryad: doi:10.5061/dryad.7990.
Fig. S1 Expression profile for sample PT0014. Genes were ordered in the X-axis by their average coverage. Only the genes with mapped reads are represented as genes with average coverage of zero (9419 genes in this library) cannot be represented in a logarithmic scale.
Fig. S2 Count of the number of putative SNPs across all libraries as a function of the distance to the nearest 5′ or 3′ exon/intron boundary.
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