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Data S1 Master SNP report with information for each putative SNP position found across all 20 Populus trichocarpa accessions. This report is deposited at Dryad: doi:10.5061/dryad.7990.

Fig. S1 Expression profile for sample PT0014. Genes were ordered in the X-axis by their average coverage. Only the genes with mapped reads are represented as genes with average coverage of zero (9419 genes in this library) cannot be represented in a logarithmic scale.

Fig. S2 Count of the number of putative SNPs across all libraries as a function of the distance to the nearest 5′ or 3′ exon/intron boundary.

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