Genotyping HapSTR loci: phase determination from direct sequencing of PCR products
Article first published online: 21 JUN 2011
© 2011 Blackwell Publishing Ltd
Molecular Ecology Resources
Volume 11, Issue 6, pages 1068–1075, November 2011
How to Cite
SORENSON, M. D. and DaCOSTA, J. M. (2011), Genotyping HapSTR loci: phase determination from direct sequencing of PCR products. Molecular Ecology Resources, 11: 1068–1075. doi: 10.1111/j.1755-0998.2011.03036.x
- Issue published online: 13 OCT 2011
- Article first published online: 21 JUN 2011
- Received 31 January 2011; revision received 26 April 2011; accepted 14 May 2011
Table S1 Detailed information on samples used for genetic analysis
Table S2 HapSTR allele frequencies for Indigo38
Table S3 HapSTR allele frequencies for Indigo38 after exclusion of five SNPs distal to the STR
Table S4 HapSTR allele frequencies for Indigo40
Table S5 HapSTR allele frequencies for Indigo41
Table S6 HapSTR allele frequencies for Indigo41 after exclusion of one SNP distal to the STR
Fig. S1 Example of amplification bias in favor of shorter allele.
Fig. S2 Additional example of PCR recombination.
Fig. S3 Example of PCR recombination with matching base at coincident peak.
Fig. S4 Example of out-of-sync double peaks.
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