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References

  • Abad ZG, Coffey MD (2008) Development of a morphological/phylogenetic lucid key for the identification of Oomycetes: Phytophthora. In: 3rd International Phytophthora, Pythium and Related Genera Workshop, p. 20. 9th International Congress of Plant Pathology, Turin, Italy.
  • Bakkeren G, Kronstad JW, Lévesque CA (2000) Comparison of AFLP fingerprints and ITS sequences as phylogenetic markers in Ustilaginomycetes. Mycologia, 92, 510521.
  • Bala K, Robideau GP, Désaulniers N, de Cock AWAM, Lévesque CA (2010a) Taxonomy, DNA barcoding and phylogeny of three new species of Pythium from Canada. Persoonia, 25, 2231.
  • Bala K, Robideau GP, Lévesque CA et al. (2010b) Phytopythium Abad, de Cock, Bala, Robideau, Lodhi & Lévesque, gen. nov. and Phytopythium sindhum Lodhi, Shahzad & Lévesque, sp. nov. Persoonia, 24, 136137.
  • Blair JE, Coffey MD, Park SY, Geiser DM, Kang S (2008) A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genetics and Biology, 45, 266277.
  • de Cock AWAM, Neuvel A, Bahnweg G, de Cock JCJM, Prell HH (1992) A comparison of morphology, pathogenicity and restriction fragment patterns of mitochondrial DNA among isolates of Phytophthora porri Foister. Netherlands Journal of Plant Pathology, 98, 277289.
  • Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM (2000) A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genetics and Biology, 30, 1732.
  • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 17921797.
  • Érsek T, Nagy ZÁ (2008) Species hybrids in the genus Phytophthora with emphasis on the alder pathogen Phytophthora alni: a review. European Journal of Plant Pathology, 122, 3139.
  • Gomez-Alpizar L, Hu CH, Oliva R, Forbes G, Ristaino JB (2008) Phylogenetic relationships of Phytophthora andina, a new species from the highlands of Ecuador that is closely related to the Irish potato famine pathogen Phytophthora infestans. Mycologia, 100, 590602.
  • Griffiths AJF (1996) Mitochondrial inheritance in filamentous fungi. Journal of Genetics, 75, 403414.
  • Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PD (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences, USA, 103, 968971.
  • Hebert PD, Stoeckle MY, Zemlak TS, Francis CM (2004) Identification of birds through DNA barcodes. PLoS Biology, 2, e312.
  • Huson DH, Richter DC, Rausch C et al. (2007) Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinformatics, 8, 460.
  • Jones EE, Deacon JW (1995) Comparative physiology and behaviour of the mycoparasites Pythium acanthophoron, P. oligandrum and P. mycoparasiticum. Biocontrol Science and Technology, 5, 2739.
  • Kageyama K, Senda M, Asano T, Suga H, Ishiguro K (2007) Intra-isolate heterogeneity of the ITS region of rDNA in Pythium helicoides. Mycological Research, 111, 416423.
  • Katoh K, Kuma K, Toh H, Miyata T (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research, 33, 511518.
  • Kroon LP, Bakker FT, van den Bosch GB, Bonants PJ, Flier WG (2004) Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genetics and Biology, 41, 766782.
  • Lévesque CA, de Cock AWAM (2004) Molecular phylogeny and taxonomy of the genus Pythium. Mycological Research, 108, 13631383.
  • Man in ‘t Veld WA (2007) Gene flow analysis demonstrates that Phytophthora fragariae var. rubi constitutes a distinct species, Phytophthora rubi comb. nov. Mycologia, 99, 222226.
  • Martin FN, Tooley PW (2003) Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxidase I and II genes. Mycologia, 95, 269284.
  • Meusnier I, Singer GA, Landry JF et al. (2008) A universal DNA mini-barcode for biodiversity analysis. BMC Genomics, 9, 214.
  • Möller EM, Bahnweg G, Sandermann H, Geiger HH (1992) A simple and efficient protocol for isolation of high molecular weight DNA from filamentous fungi, fruit bodies and infected plant tissues. Nucleic Acids Research, 20, 61156116.
  • Nechwatal J, Mendgen K (2008) Evidence for the occurrence of natural hybridization in reed-associated Pythium species. Plant Pathology, 58, 261270.
  • Osiewacz HD, Esser K (1984) The mitochondrial plasmid of Podospora anserina: a mobile intron of a mitochondrial gene. Current Genetics, 8, 299305.
  • Petersen AB, Rosendahl S (2000) Phylogeny of the Peronosporomycetes (oomycota) based on partial sequences of the large ribosomal subunit (LSU rDNA). Mycological Research, 104, 12951303.
  • Picard K, Tirilly Y, Benhamou N (2000) Cytological effects of cellulases in the parasitism of Phytophthora parasitica by Pythium oligandrum. Applied and Environmental Microbiology, 66, 43054314.
  • Riethmüller A, Weiß M, Oberwinkler F (1999) Phylogenetic studies of Saprolegniomycetidae and related groups based on nuclear large subunit ribosomal DNA sequences. Canadian Journal of Botany, 77, 17901800.
  • Riethmüller A, Voglmayr H, Goker M, Weiß M, Oberwinkler F (2002) Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences. Mycologia, 94, 834849.
  • Ristaino JB, Madritch M, Trout CL, Parra G (1998) PCR amplification of ribosomal DNA for species identification in the plant pathogen genus Phytophthora. Applied and Environmental Microbiology, 64, 948954.
  • Ristaino JB, Haege MJ, Hu CH (2008) Development of a Phytophthora lucid key. In: 9th International Congress of Plant Pathology p. S2.308. Journal of Plant Pathology, Turin, Italy.
  • Saunders GW (2005) Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Philosophical Transactions of the Royal Society of London B: Biological Sciences, 360, 18791888.
  • Schurko AM, Mendoza L, Lévesque CA et al. (2003) A molecular phylogeny of Pythium insidiosum. Mycological Research, 107, 537544.
  • Seifert KA, Samson RA, Dewaard JR et al. (2007) Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case. Proceedings of the National Academy of Sciences, USA, 104, 39013906.
  • Sekimoto S, Beakes GW, Gachon CM et al. (2008) The development, ultrastructural cytology, and molecular phylogeny of the basal oomycete Eurychasma dicksonii, infecting the filamentous phaeophyte algae Ectocarpus siliculosus and Pylaiella littoralis. Protist, 159, 299318.
  • Stephenson LW, Erwin DC, Leary JV (1974) Hyphal anastomosis in Phytophthora capsici. Phytopathology, 64, 149150.
  • Thines M (2007) Characterisation and phylogeny of repeated elements giving rise to exceptional length of ITS2 in several downy mildew genera (Peronosporaceae). Fungal Genetics and Biology, 44, 199207.
  • Voglmayr H (2003) Phylogenetic relationships of Peronospora and related genera based on nuclear ribosomal ITS sequences. Mycological Research, 107, 11321142.
  • Voglmayr H, Riethmüller A (2006) Phylogenetic relationships of Albugo species (white blister rusts) based on LSU rDNA sequence and oospore data. Mycological Research, 110, 7585.
  • Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PD (2005) DNA barcoding Australia’s fish species. Philosophical Transactions of the Royal Society of London B: Biological Sciences, 360, 18471857.
  • White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Methods and Applications (eds Innis MA, Gelfand DH, Sninsky JJ & White TJ), pp. 315322. Academic Press, San Diego.