Discovery and characterization of a large number of diagnostic markers to discriminate Oncorhynchus mykiss and O. clarkii
Version of Record online: 16 MAY 2012
Published 2012. This article is a US Government work and is in the public domain in the USA
Molecular Ecology Resources
Volume 12, Issue 5, pages 918–931, September 2012
How to Cite
PRITCHARD, V. L., ABADÍA-CARDOSO, A. and GARZA, J. C. (2012), Discovery and characterization of a large number of diagnostic markers to discriminate Oncorhynchus mykiss and O. clarkii. Molecular Ecology Resources, 12: 918–931. doi: 10.1111/j.1755-0998.2012.03149.x
- Issue online: 16 AUG 2012
- Version of Record online: 16 MAY 2012
- Received 12 December 2011; revised received 29 February 2012; accepted 5 March 2012
Fig. S1 Proportions of O. clarkii diagnostic and O. mykiss diagnostic alleles observed in validation samples. Bars not summing to one indicate ‘no call’ individuals.
Table S1 Putative functions of loci containing SNPs and SNP location with respect to gene features. Superscripts indicate species in which the best Blast match was found: 1O. mykiss; 2Salmo salar; 3Danio rerio; 4other. Only matches with an E-value ≤1e-15 are shown. Location abbreviations refer to the following: UTR: untranslated region; CDS: protein-coding sequence; ss: synonymous polymorphism; ns: nonsynonymous polymorphism. Amino acid codes show changes generated by nonsynonymous substitutions.
Table S2 SNP calls for all samples. C: homozygous O. clarkii diagnostic; M: homozygous O. mykiss diagnostic; H: heterozygote; NC: no call; nr: assay not run or failed over entire Fluidigm plate.
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