• Ball, I.R., Possingham H.P. (2000) MARXAN (v1.8.2): marine reserve design using spatially explicit annealing.
  • Callaway, J.C., Josselyn M.N. (1992) The introduction and spread of smooth cordgrass (Spartina alterniflora) in south San Francisco bay. Estuaries 15, 218226.
  • Chan, F., Barth J.A., Lubchenco J. et al . (2008) Emergence of anoxia in the California Current large marine ecosystem. Science 319, 920.
  • Chase, Z., Johnson K.S., Elrod V.A. et al . (2005) Manganese and iron distributions off central California influenced by upwelling and shelf width. Mar Chem 95, 235254.
  • Chavez, F.P., Ryan J., Lluch-Cota S.E., Niquen M. (2003) From anchovies to sardines and back: multidecadal change in the Pacific Ocean. Science 299, 217221.
  • EPA (2005) National coastal condition report II. NOAA, Washington , D.C. , p. 311.
  • Guinotte, J.M., Buddemeier R.W., Kleypas J.A. (2003) Future coral reef habitat marginality: temporal and spatial effects of climate change in the Pacific basin. Coral Reefs 22, 551558.
  • Halpern, B.S., Selkoe K.A., Micheli F., Kappel C.V. (2007) Evaluating and ranking the vulnerability of global marine ecosystems to anthropogenic threats. Conserv Biol 21, 13011315.
  • Halpern, B.S., Kappel C.V., Micheli F. et al. (2008a) Diminishing sea ice—response. Science 321, 14441445.
  • Halpern, B.S., McLeod K.L., Rosenberg A.A., Crowder L.B. (2008b) Managing for cumulative impacts in ecosystem-based management through ocean zoning. Ocean Coast Manage 51, 203211.
  • Halpern, B.S., Walbridge S., Selkoe K.A. et al . (2008c) A global map of human impact on marine ecosystems. Science 319, 948952.
  • Lenihan, H.S., Peterson C.H. (1998) How habitat degradation through fishery disturbance enhances impacts of hypoxia on oyster reefs. Ecol Appl 8, 128140.
  • McLeod, K.L., Lubchenco J., Palumbi S.R., Rosenberg A.A. (2005) Scientific consensus statement on marine ecosystem-based management. Communication Partnership for Science and the Sea, Corvallis , OR .
  • Neslo, R., Micheli F., Kappel C.V., Selkoe K.A., Halpern B.S., Cooke R.G. (2008) Modeling stakeholder preferences with probabilistic inversion: application to prioritizing marine ecosystem vulnerabilities. Pages 265285 in L.Linkov, editor. Real-time and deliberative decision making. Springer, Amsterdam , The Netherlands .
  • POC (2003) America's living oceans: charting a course for sea change. Pew Oceans Commission, Arlington , VA .
  • Possingham, H.P., Ball I.R., Andelman S. (2000) Mathematical methods for identifying representative reserve networks. Pages 291305 in S.Ferson, M.Burgman, editors. Quantitative methods for conservation biology. Springer-Verlag, New York .
  • Ruckelshaus, M., Klinger T., Knowlton N., Demaster D.R. (2008) Marine ecosystem-based management in practice: scientific and governance challenges. BioScience 58, 5363.
  • Ruesink, J.L., Lenihan H.S., Trimble A.C. et al . (2005) Introduction of non-native oysters: ecosystem effects and restoration implications. Ann Rev Ecol Evol Syst 36, 643689.
  • Selkoe, K.A., Halpern B.S., Ebert C.M. et al . (2009). A map of human impacts to a ‘pristine’ coral reef ecosystem: the Papahanaumokuakea Marine National Monument. Coral Reefs. doi: DOI: 10.1007/s00338-009-0490-z.
  • Selkoe, K.A., Kappel C.V., Halpern B.S. et al . (2008) Response to comment on “A global map of human impact on marine ecosystems”. Science 321, 1446c.
  • Sivas, D.A., Caldwell M.R. (2008) A new vision for California ocean governance: comprehensive ecosystem-based marine zoning. Stan Envtl L J 27, 209279.
  • Teck, S.J., Halpern B.S., Kappel C.V. et al . (in review). Using expert judgment to assess the vulnerability of marine ecosystems in the California Current. Ecol Appl.
  • USCOP. (2004) An ocean blueprint for the 21st century. Final report to the President and Congress. U.S. Commission on Ocean Policy, Washington , D.C .
  • WCGA. (2006) West Coast governors' agreement on ocean health. Available from: (accessed 20 November 2008).