Fig. S1. Differential identification of phylogenetic groups between datasets and classification methods. (A) Actinobacteria sequences. (B) Cyanobacteria sequences. (C) Proteobacteria sequences. Datasets: pyroSSU, pyrosequenced SSU rRNA genes; metaSSU, SSU rRNA genes parsed from the shotgun metagenomes; metaSEED, SEED classification of bulk shotgun metagenome sequences; metaTree, ML TreeMap classification of total metagenome sequences; metaMEGAN, MEGAN classification of total shotgun metagenome sequences.

Table S1. Sequence statistics for the different sequence datasets.

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