Commensal Escherichia coli strains in Guiana reveal a high genetic diversity with host-dependant population structure
Version of Record online: 19 AUG 2012
© 2012 Society for Applied Microbiology and Blackwell Publishing Ltd
Environmental Microbiology Reports
Thematic Issue on Environmental Ecology of Pathogens and Resistances
Volume 5, Issue 1, pages 49–57, February 2013
How to Cite
Lescat, M., Clermont, O., Woerther, P. L., Glodt, J., Dion, S., Skurnik, D., Djossou, F., Dupont, C., Perroz, G., Picard, B., Catzeflis, F., Andremont, A. and Denamur, E. (2013), Commensal Escherichia coli strains in Guiana reveal a high genetic diversity with host-dependant population structure. Environmental Microbiology Reports, 5: 49–57. doi: 10.1111/j.1758-2229.2012.00374.x
- Issue online: 3 FEB 2013
- Version of Record online: 19 AUG 2012
- Accepted manuscript online: 31 JUL 2012 05:35AM EST
- Manuscript Accepted: 21 JUL 2012
- Manuscript Received: 9 JUL 2012
- Agence Française de Sécurité Sanitaire de l'Environnement et du Travail. Grant Number: ES05-011
- Agence Nationale pour la Recherche. Grant Number: 05-9-114
- Institut National de la Santé et de la Recherche Médicale. Grant Number: C06-18
- Centre National de Référence des
- Alliance for the Prudent Use of Antibiotics (APUA)
- Fondation pour la Recherche Médicale
Fig. S1. Location of study site and sample collection points in Trois-Sauts, French Guiana. The study was located in a protected area where human access is restricted. Locations of human, human-associated animal and wild animal samples are indicated in white, grey and black circles, according to the Global Positioning System (GPS) collected for each sample. Circles are proportional to the numbers of sampled individuals.
Table S1. Main characteristics of individuals sampled during the first collect in October 2006 [humans (H), human-associated animals (HAA) and wild animals (S1-WA)] and the second collect in June 2008 [wild animals (S2-WA)] as well as the E. coli presence in the faeces.
Table S2. Presence of extraintestinal virulence factors, intraintestinal virulence factors, bacteriocins and corresponding scores of strains of E. coli issued from humans, human-associated animals and wild animals from both collects (2006–2008).
Table S3. Presence of resistance to antibiotics and resistance score of E. coli issued from humans, human-associated animals and wild animals from both collects (2006–2008).
Table S4. Character mapping of the 96 E. coli strains belonging to the B2, D, E and F phylogroups and ordered as in the Fig. 1.
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