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Appendix S1. Codes for running binomial mixture models on simulated data sets with R and WinBUGS.

Appendix S2. Codes for running beta-binomial mixture models on simulated data sets with R and WinBUGS.

Appendix S3. Estimation of the probability of a site being occupied conditional on manatees not being detected at the site (ψcondl).

Appendix S4. Codes for running beta-binomial mixture models, and accounting for variation in the size of sample units with R and WinBUGS.

Appendix S5. R and WinBUGS codes for running beta-binomial mixture models with abundance assumed to follow a zero-truncated Poisson distribution.

Appendix S6. Graphical representation of relative bias for each of the 16 estimators considered in Table 1.

Appendix S7. Posterior distribution for λ, p and ρ obtained by fitting the beta-binomial mixture models (with zero-truncated distribution for λ) to aerial survey data.

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