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Figure S1. Model averaged GMYC predictions of pairwise probabilities that aphid individuals (Brachycaudus) co-occur within a species cluster.

Figure S2. Model averaged GMYC predictions of pairwise probabilities that bacterial symbionts (Buchnera aphidicola) co-occur within a species cluster.

Table S1. Summary of GMYC and null models for the Buchnera phylogeny.

Table S2. Summary of GMYC and null models for the Brachycaudus phylogeny.

Table S3. Summary of GMYC and null models for the non-Firmicutes bacteria.

Table S4. Summary of GMYC and null models for the first subset of Firmicutes bacteria.

Table S5. Summary of GMYC and null models for the second subset of Firmicutes bacteria.

Appendix S1. R code for GMYC model fitting and summary using model averaging.

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