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How to measure and test phylogenetic signal
Article first published online: 10 APR 2012
© 2012 The Authors. Methods in Ecology and Evolution © 2012 British Ecological Society
Methods in Ecology and Evolution
Volume 3, Issue 4, pages 743–756, August 2012
How to Cite
Münkemüller, T., Lavergne, S., Bzeznik, B., Dray, S., Jombart, T., Schiffers, K. and Thuiller, W. (2012), How to measure and test phylogenetic signal. Methods in Ecology and Evolution, 3: 743–756. doi: 10.1111/j.2041-210X.2012.00196.x
- Issue published online: 30 JUL 2012
- Article first published online: 10 APR 2012
- Received 17 May 2011; accepted 6 February 2012 Handling Editor: Luke Harmon
Appendix S1. More complex models of trait evolution.
Appendix S2. Similarity of our simulations to a λ model of trait evolution.
Table S1. Phylogenetic signal indices and tests (a) and related measures (b).
Table S2. Influence of explanatory variables on response variables. (a) Phylogenetic signal indices. (b) Standard deviations of phylo,,genetic signal indices. (c) Phylogenetic signal tests. (d) Standard deviations of phylogenetic signal tests.
Fig. S1. Response of phylogenetic signal tests to increasing strength of Brownian motion for different sample sizes.
Fig. S2. Response of phylogenetic signal tests to polytomies and branch length information.
Fig. S3. Correlation of phylogenetic signal tests for different N.
Fig. S4. Response of phylogenetic signal tests to increasing values of the parameters for different tree transformations.
Fig. S5. Comparison of phylogenetic signal values against increasing strength of Brownian motion for the model of trait evolution applied in this paper (w model) and a λ model of trait evolution.
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