Fig. S1. Principal coordinates ordination of the 454 OTUs.

Fig. S2. Principal coordinates ordination of the Sanger-OTUs.

Table S1. Software packages and pipelines used.

Table S2. Primers and MIDs used in this study.

Table S3. Basic statistics and OTU-picking progression.

Table S4. Allelic dropout by MID and taxon.

Data S1. Data S1. Gene sequences, read-abundance analysis, figtree datasets, example script commands, OTU tables, perl scripts and PCoA ordinations of the 15 Sørensen-Dice dissimilarity matrices. Raw sequence data deposited in the Dryad Repository:

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