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  • Adami, A. and Cavazzoni, V. (1999) Occurrence of selected bacterial groups in the faeces of piglets fed with Bacillus coagulans as probiotic. J Bacic Microbiol 39, 39.
  • Alkan, H., Baysal, Z., Uyar, F. and Dogru, M. (2007) Production of lipase by a newly isolated Bacillus coagulans under solid-state fermentation using melon wastes. Appl Biochem Biotechnol 136, 183192.
  • Becker, M.E. and Pederson, C.S. (1950) The physiological characters of Bacillus coagulans (Bacillus thermoacidurans). J Bacteriol 59, 717725.
  • Berry, R.N. (1933) Some new heat resistant, acid tolerant organisms causing spoilage in tomato juice. J Bacteriol 25, 7273.
  • Brandtzaeg, P. (2007) Induction of secretory immunity and memory at mucosal surfaces. Vaccine 25, 54675484.
  • Cavazzoni, V., Adami, A. and Castrovilli, C. (1998) Performance of broiler chickens supplemented with Bacillus coagulans as probiotic. Br Poult Sci 39, 526529.
  • Chopra, A.K. and Mathur, D.K. (1984) Isolation, screening and characterization of thermophilic Bacillus species isolated from dairy products. J Appl Bacteriol 57, 263271.
  • Combet-Blanc, Y., Ollivier, B., Streicher, C., Patel, B.K.C., Dwivedi, P.P., Pot, B., Prensier, G. and Garcia, J.L. (1995a) Bacillus thermoamylovorans sp. nov., a moderately thermophilic and amylolytic bacterium. Int J Syst Bacteriol 45, 916.
  • Combet-Blanc, Y., Kalamba, K.K. and Kergoat, P.Y. (1995b) Effect of pH on Bacillus thermoamylovorans growth and glucose fermentation. Appl Environ Microbiol 61, 656659.
  • Coorevits, A., De Jonghe, V., Vandroemme, J., Reekmans, R., Heyrman, J., Messens, W., De Vos, P. and Heyndrickx, M. (2008) Comparative analysis of the diversity of aerobic spore-forming bacteria in raw milk from organic and conventional dairy farms. Syst Appl Microbiol 31, 126140.
  • Coorevits, A., Logan, N., Dinsdale, A., Halket, G., Scheldeman, P., Heyndrickx, M., Schumann, P., Van Landschoot, A. et al. (2011) Bacillus thermolactis sp. nov., isolated from dairy farms, and emended description of Bacillus thermoamylovorans. Int J Syst Evol Microbiol 61, 19541961.
  • De Clerck, E., Vanhoutte, T., Hebb, T., Geerinck, J., Devos, J. and De Vos, P. (2004) Isolation, characterization, and identification of bacterial contaminants in semifinal gelatin extracts. Appl Environ Microbiol 70, 36643672.
  • Dolin, B.J. (2009) Effects of a propietary Bacillus coagulans preparation on symptoms of diarrhoea-predominant irritable bowel syndrome. Methods Find Exp Clin Pharmacol 31, 655659.
  • Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783791.
  • Gérard, P., Béguet, F., Lepercq, P., Rigottier-Gois, L., Rochet, V., Andrieux, C. and Juste, C. (2004) Gnotobiotic rats harboring human intestinal microbiota as a model for studying cholesterol-to-coprostanol conversion. FEMS Microbiol Ecol 47, 337343.
  • Gibbons, R.J. and Kapsimalis, B. (1967) Estimates of the overall rate of growth of the intestinal microflora of hamsters, guinea pigs, and mice. J Bacteriol 93, 510512.
  • Holmgren, J. (1991) Mucosal immunity and vaccination. FEMS Microbiol Immunol 4, 19.
  • Hucker, G.J. (1921) A new modification and application of the Gram stain. J Bacteriol 6, 395397.
  • Hun, L. (2009) Bacillus coagulans significantly improved abdominal pain and bloating in patients with IBS. Postgrad Med 121, 119124.
  • Ishii, K. and Takii, S. (2003) Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis. J Appl Microbiol 95, 109119.
  • Ishikawa, K., Ohmori, T., Miyamoto, H., Ito, T., Kumagai, Y., Sonoda, M., Matsumoto, J., Miyamoto, H. et al. (2013) Denitrification in soil amended with thermophile-fermented compost suppresses nitrate accumulation in plants. Appl Microbiol Biotechnol, in press. http://dx.doi.org/10.1007/s00253-012-4004-5.
  • Jung, M.Y., Kim, J.S. and Chang, Y.H. (2009) Bacillus acidiproducens sp. nov., vineyard soil isolates that produce lactic acid. Int J Syst Evol Microbiol 59, 22262231.
  • Kimura, M. (1983) The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
  • Kligler, B. and Cohrssen, A. (2008) Probiotics. Am Fam Physician 78, 10731078.
  • Kotay, S.M. and Das, D. (2007) Microbial hydrogen production with Bacillus coagulans IIT-BT S1 isolated from anaerobic sewage sludge. Bioresour Technol 98, 11831190.
  • Lane, D.J. (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics eds Stackebrandt, E. and Goodfellow, M. pp. 115175. Chichester, England: John Wiley & Sons Ltd.
  • Ley, R.E., Peterson, D.A. and Gordon, J.I. (2006) Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124, 837848.
  • Luisiana Veterinary Medical Association. http://lvma.org/mouse.html
  • Macpherson, A.J. and Uhr, T. (2004) Compartmentalization of the mucosal immune responses to commensal intestinal bacteria. Ann N Y Acad Sci 1029, 3643.
  • McGarvey, J.A., Miller, W.G., Sanchez, S. and Stanker, L. (2004) Identification of bacterial populations in dairy wastewaters by use of 16S rRNA gene sequences and other genetic markers. Appl Environ Microbiol 70, 42674275.
  • Mestecky, J. and Elson, C.O. (2008) Peyer's patches as the inductive site for IgA responses. J Immunol 180, 12931294.
  • Miyamoto, H., Kodama, H., Udagawa, M., Mori, K., Matsumoto, J., Oosaki, H., Oosaki, T., Ishizeki, M. et al. (2012) The oral administration of thermophile-fermented compost extract and its influence on stillbirths and growth rate of pre-weaning piglets. Res Vet Sci 93, 137142.
  • Momose, Y., Maruyama, A., Iwasaki, T., Miyamoto, Y. and Itoh, K. (2009) 16S rRNA gene sequence-based analysis of clostridia related to conversion of germfree mice to the normal state. J Appl Microbiol 107, 20882097.
  • Nakamura, K., Haruta, S., Nguyen, H.L., Ishii, M. and Igarashi, Y. (2004) Enzyme production-based approach for determining the functions of microorganisms within a community. Appl Environ Microbiol 70, 33293337.
  • Niisawa, C., Oka, S., Kodama, H., Hirai, M., Kumagai, Y., Mori, K., Matsumoto, J., Miyamoto, H. et al. (2008) Microbial analysis of composted product of marine animal resources and isolation of antagonistic bacteria to plant pathogen from the compost. J Gen Appl Microbiol 54, 149158.
  • O'Mahony, L., McCarthy, J., Kelly, P., Hurley, G., Luo, F., Chen, K., O'Sullivan, G.C., Kiely, B. et al. (2005) Lactobacillus and Bifidobacterium in irritable bowel syndrome: symptom responses and relationship to cytokine profiles. Gastroenterology 128, 541551.
  • Öqvist, C.K., Kurola, J., Pakarinen, J., Ekman, J., Ikävalko, S., Simell, J. and Salkinoja-Salonen, M. (2008) Prokaryotic microbiota of recycled paper mills with low or zero effluent. J Ind Microbiol Biotechnol 35, 11651173.
  • Petrof, E.O. (2009) Probiotics and gastrointestinal disease: clinical evidence and basic science. Antiinflamm. Antiallergy Agents Med Chem 8, 260269.
  • Reikvam, D.H., Erofeev, A., Sandvik, A., Grcic, V., Jahnsen, F.L., Gaustad, P., McCoy, K.D., Macpherson, A.J. et al. (2011) Depletion of murine intestinal microbiota: effects of gut mucosa and epithelial gene expression. PLoS ONE 6, e17996.
  • Saitou, N. and Nei, M. (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406425.
  • Sakai, K., Narihara, M., Kasama, Y., Wakayama, M. and Moriguchi, M. (1994) Purification and characterization of thermostable β-N-acetylhexosaminidase of Bacillus stearothermophilus CH-4 isolated from chitin-containing compost. Appl Environ Microbiol 60, 29112915.
  • Sakai, K., Yokota, A., Kurokawa, H., Wakayama, M. and Moriguchi, M. (1998) Purification and characterization of three thermostable endochitinases of a noble Bacillus strain, MH-1, isolated from chitin-containing compost. Appl Environ Microbiol 64, 33973402.
  • Sakata, T., Kojima, T., Fujieda, M., Takahashi, M. and Machibata, T. (2003) Influences of probiotic bacteria on organic acid production by pig caecal bacteria in vitro. Proc Nutr Soc 62, 7380.
  • Satoh, T., Nishiuchi, T., Naito, T., Matsushita, T., Kodama, H., Miyamoto, H. and Miyamoto, H. (2012) Impact of oral compost administration on gene expression in the rat gastrointestinal tract. J Biosci Bioeng 114, 500505.
  • Schaeffer, A.B. and Fulton, M.D. (1933) A simplified method of staining endospores. Science 77, 194.
  • Scheldeman, P., Pil, A., Herman, L., De Vos, P. and Heyndrickx, M. (2005) Incidence and diversity of potentially highly heat-resistant spores isolated at dairy farms. Appl Environ Microbiol 71, 14801494.
  • Stecher, B. and Hardt, W.D. (2008) The role of microbiota in infectious disease. Trends Microbiol 16, 107114.
  • Takaku, H., Kodaira, S., Kimoto, A., Nashimoto, M. and Takagi, M. (2006) Microbial communities in the garbage composting with rice hull as an amendment revealed by culture-dependent and -independent approaches. J Biosci Bioeng 101, 4250.
  • Tanaka, R., Miyamoto, H., Kodama, H., Kawachi, N., Udagawa, M., Miyamoto, H. and Matsushita, T. (2010) Feed additives with thermophile-fermented compost enhance concentrations of free amino acids in the muscle of the flatfish Paralichthys olivaceus. J Gen Appl Microbiol 56, 6165.
  • Wang, J.Y., Stabnikova, O., Tay, S.T.L., Ivanov, V. and Tay, J.H. (2003) Intensive bioconversion of sewage sludge and food waste by Bacillus thermoamylovorans. World J Microbiol Biotechnol 19, 427432.
  • Wiegel, J. and Kevbrin, V.V. (2004) Alkalithermophiles. Biochem Soc Trans 32, 193198.
  • Xu, J. and Gordon, J.I. (2003) Inaugural article: honor thy symbionts. Proc Natl Acad Sci USA 100, 1045210459.